mRNA_H-elongata_contig76611.15332.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI) HSP 1 Score: 261 bits (666), Expect = 5.660e-78 Identity = 123/141 (87.23%), Postives = 134/141 (95.04%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAYMH 441
Y+RY EGPPRLGW+FNM+PTS+PDASGNE+SGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERY+Q+CIQ IRRRFEDSAVEV V DKEDL+MPNHLSGKLRRFLKLSFHSVADLM+VK+ LMPTIQANK R E+QDAYMH
Sbjct: 84 YDRYSEGPPRLGWIFNMLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYIQDCIQCIRRRFEDSAVEVTVVDKEDLDMPNHLSGKLRRFLKLSFHSVADLMEVKRALMPTIQANKTRAEAQDAYMH 224
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: D7FPA2_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPA2_ECTSI) HSP 1 Score: 200 bits (508), Expect = 9.820e-64 Identity = 93/108 (86.11%), Postives = 101/108 (93.52%), Query Frame = 1
Query: 1 PLAKPRYERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLR 324
P A P Y+RY EGPPRLGW+FNM+PTS+PDASGNE+SGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERY+Q+CIQ IRRRFEDSAVEV V DKEDL+MPNHLSGKLR
Sbjct: 27 PRACPWYDRYSEGPPRLGWIFNMLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYIQDCIQCIRRRFEDSAVEVTVVDKEDLDMPNHLSGKLR 134
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A6H5JC65_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC65_9PHAE) HSP 1 Score: 201 bits (511), Expect = 5.670e-63 Identity = 109/179 (60.89%), Postives = 119/179 (66.48%), Query Frame = 1
Query: 67 MMPTSLPDASGNERSGLDMYFLEQDGGTFKATV------------------------------------------------------FYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAYMH 441
M+PTS+PDASGNE+SGLDMYFLEQDGGTFKATV FYKPYFYVLVKEER++Q+CIQ IRRRFEDSAVEV V DKEDL+MPNHLSGKLRRFLKLSFHSVADLM+VK+ LMPTIQANK R E+QDAYMH
Sbjct: 1 MLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVRTCRDRRAITCTHVCTKLSRPTAPNLFRSSRPNENLSHFMFALWRRSFLFSTKVFYKPYFYVLVKEERHIQDCIQCIRRRFEDSAVEVTVVDKEDLDMPNHLSGKLRRFLKLSFHSVADLMEVKRALMPTIQANKTRAEAQDAYMH 179
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.380e-43 Identity = 68/132 (51.52%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKR 414
Y R++EG PRLGW+ +M +++PD G ERSG+D+YFL+QDG TFK T FY+PYFY+ ++++RY+ E +Q ++R+F+ + + DKEDL++PNHLSGKL RFL+LSF +V++LM+V+ L+P ++ NK+R
Sbjct: 69 YSRFEEGSPRLGWLLDMNASTVPDEEGRERSGMDLYFLQQDGDTFKVTTFYEPYFYIGLRDDRYIAEVVQLLQRKFDQVGMTILACDKEDLDLPNHLSGKLHRFLRLSFFNVSELMEVRSVLLPLVERNKQR 200
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A812Q0Y1_9DINO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q0Y1_9DINO) HSP 1 Score: 136 bits (343), Expect = 1.900e-34 Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKR 414
YE + EGPPR+G++ NM+PTS+ + ERS LD+YFL+QDG TFKA + Y+PYFYV V R+ +E + R+FE V+ A+ EDL++PNHLSG R LKL F SV +LM+V+ L P +QANK+R
Sbjct: 58 YETFTEGPPRVGYLTNMLPTSVANEDRIERSALDLYFLQQDGATFKAQLVYQPYFYV-VCAARWCKEVTALLERKFESLIAGVSTAEMEDLDLPNHLSGIKRTLLKLEFRSVQELMEVRNELQPIVQANKRR 188
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A2G5BKN9_COERN (DNA polymerase epsilon catalytic subunit n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKN9_COERN) HSP 1 Score: 126 bits (317), Expect = 6.230e-31 Identity = 68/146 (46.58%), Postives = 95/146 (65.07%), Query Frame = 1
Query: 7 AKPRYERYKEGPPRLGWMFNMMPTSLPDASGNE-RSGLDMYFLEQDGGTFKATVFYKPYFYVLVK--EERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 435
+K + RY+EGP RLGW+ NM TS+PD N +S +D YFLEQDGG+FK T+ +KPYFY++ E V+E + RRF+ V ++EDL+M NHL+G RR +K+ F +V DL+ V++ L P IQ N KR+E +AY
Sbjct: 31 SKLGFGRYQEGPQRLGWLVNMHATSVPDEERNSTKSAVDYYFLEQDGGSFKCTLLFKPYFYIICTPGSEAEVEEWLV---RRFDRLVDHVESVEREDLQMTNHLTGCKRRLVKIVFRNVQDLLSVRRELQPIIQRNSKRSELVNAY 173
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A2R5GVQ4_9STRA (DNA-directed DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVQ4_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.160e-30 Identity = 63/144 (43.75%), Postives = 96/144 (66.67%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPDASGN-----ERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 435
++ + EGP R+GW+ NM+P ++ E S L++YFL+QDG TFKA + ++PYFYVLVKEE +++E + RRF EVA+ D+EDL+M +HL+GK R L+L F +V DLM+V+ + ++ NK R+++ DAY
Sbjct: 55 FDDFTEGPARVGWLLNMLPCTVNFVDPTLEKPVELSALELYFLQQDGNTFKAKILHRPYFYVLVKEE-FLKETKAMLERRFASDVSEVAMVDREDLDMADHLAGKHRVLLQLFFRNVNDLMNVRLEVQEAVRVNKSRSKAADAY 197
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: UPI001D0475A3 (DNA polymerase epsilon catalytic subunit n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D0475A3) HSP 1 Score: 122 bits (307), Expect = 1.380e-29 Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPDAS-GNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 435
+ RY G ++GW+ NM T++ D R+G++ YF+E DGGTFKATV Y PYF + V++ + E + RRRFE +V +KEDL+MPNHL G R FL+L+FH+V+DL++V++ +MP + NKK + D Y
Sbjct: 62 FARYDSGRRKIGWLCNMHSTTIEDEKIPGGRAGVEFYFIEDDGGTFKATVQYDPYFLIAVRKGKEA-EVEEWCRRRFEGLVKDVERVEKEDLQMPNHLLGYRRMFLQLAFHNVSDLLNVRRDIMPIAEKNKKNMNAMDTY 200
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A0N1P2H3_9EURO (DNA polymerase epsilon catalytic subunit n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N1P2H3_9EURO) HSP 1 Score: 122 bits (306), Expect = 1.880e-29 Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPD---ASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 435
+ R+ G R+GW++NM TS+PD A+G R+G+D YF+ +DG FKATV Y PYF + VK R QE + +R FE V+ +KEDL MPNHL G R FLKL+F SV+DLM V+K +MP + NK++ + D Y
Sbjct: 60 FPRFDSGRKRVGWLYNMHSTSIPDSRIAAG--RAGVDFYFIGEDGHNFKATVEYDPYFLIAVKRGR-EQEVEEWCKRMFEGMVKTVSKIEKEDLSMPNHLLGYRRTFLKLTFPSVSDLMSVRKVIMPIAERNKEKITAMDTY 198
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A6A6HB66_9PEZI (DNA polymerase epsilon catalytic subunit n=1 Tax=Viridothelium virens TaxID=1048519 RepID=A0A6A6HB66_9PEZI) HSP 1 Score: 122 bits (305), Expect = 2.570e-29 Identity = 63/140 (45.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query: 19 YERYKEGPPRLGWMFNMMPTSLPDAS-GNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 435
+ R++ G R+GW+ NM TS+ D R+G+D YF+E+DGGTFK T+ Y PYF + VK+ + E + RR+FE + +KEDL+MPNHL G R FLKLSF +V DL+ V+K +MP + NKK + D Y
Sbjct: 61 FARFEAGKRRIGWLCNMHSTSVEDQKIPGGRAGVDFYFIEEDGGTFKTTLEYDPYFLIAVKKSK-EPEVEEWCRRQFEGLVKNIKKVEKEDLQMPNHLLGYRRSFLKLSFANVGDLLSVRKTIMPIAEKNKKNLSAMDTY 199 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76611.15332.1 >prot_H-elongata_contig76611.15332.1 ID=prot_H-elongata_contig76611.15332.1|Name=mRNA_H-elongata_contig76611.15332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp PLAKPRYERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTback to top mRNA from alignment at H-elongata_contig76611:467..1923+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76611.15332.1 ID=mRNA_H-elongata_contig76611.15332.1|Name=mRNA_H-elongata_contig76611.15332.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1457bp|location=Sequence derived from alignment at H-elongata_contig76611:467..1923+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76611:467..1923+ >mRNA_H-elongata_contig76611.15332.1 ID=mRNA_H-elongata_contig76611.15332.1|Name=mRNA_H-elongata_contig76611.15332.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig76611:467..1923+ (Himanthalia elongata Himel1 dioecious)back to top |