mRNA_H-elongata_contig76575.15328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76575.15328.1
Unique NamemRNA_H-elongata_contig76575.15328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: D8LIG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.770e-22
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    4 TSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            T   L  + RHLSALGRFGETAFI+PLYG+GEL QSFCRMAAV+GA+ +LRRQL+GA+VDR +GR
Sbjct:  463 TEEGLEAVYRHLSALGRFGETAFIAPLYGVGELSQSFCRMAAVHGAICMLRRQLRGAVVDRNSGR 527
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A443R773_9ACAR (Rab proteins geranylgeranyltransferase component A n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443R773_9ACAR)

HSP 1 Score: 79.7 bits (195), Expect = 7.380e-16
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 TSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVD 183
            T + ++ +NR LS+LGRFG T FI PLYG GE+PQ+FCR+ AV+G  Y L+R L G IVD
Sbjct:  258 TENAMVGVNRFLSSLGRFGNTPFILPLYGSGEIPQAFCRLCAVFGGTYCLKRSLNGIIVD 317
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI001E1B562B (rab proteins geranylgeranyltransferase component A 2 n=1 Tax=Jaculus jaculus TaxID=51337 RepID=UPI001E1B562B)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-14
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   37 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            L  LGRFG T F+ PLYG GE+PQ FCRM+AV+G +Y LR +++G +VD+ +GR
Sbjct:  354 LRCLGRFGNTPFLFPLYGQGEIPQCFCRMSAVFGGIYCLRHKIQGLVVDKDSGR 407
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI0003342E7E (rab proteins geranylgeranyltransferase component A 2 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI0003342E7E)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-14
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   37 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            L  LGRFG T F+ PLYG GE+PQ FCRM+AV+G +Y LRRQ++  +VD+  GR
Sbjct:  367 LQCLGRFGNTPFLFPLYGQGEMPQCFCRMSAVFGGIYCLRRQVQCLVVDKQAGR 420
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A6J0CTU4_PERMB (Rab proteins geranylgeranyltransferase component A n=6 Tax=Muroidea TaxID=337687 RepID=A0A6J0CTU4_PERMB)

HSP 1 Score: 74.3 bits (181), Expect = 5.890e-14
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   37 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            L  LGRFG T FI PLYG GE+PQ FCRM AV+G +Y LR Q++  IVD+ +GR
Sbjct:  357 LQCLGRFGNTPFIFPLYGQGEIPQCFCRMCAVFGGIYCLRHQVQCLIVDKDSGR 410
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI001402C2D2 (rab proteins geranylgeranyltransferase component A 2-like isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402C2D2)

HSP 1 Score: 74.3 bits (181), Expect = 5.910e-14
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            +T   L    R L++LGR+G T F+ PLYG GE+PQ FCRM+AV+   Y LR  LK  +VD  TGR
Sbjct:  330 STEEGLAATRRFLASLGRYGNTPFLFPLYGSGEVPQCFCRMSAVFAGTYCLRHSLKHLVVDSSTGR 395
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A8J6DP35_GALPY (Rab proteins geranylgeranyltransferase component A n=2 Tax=Talpidae TaxID=9373 RepID=A0A8J6DP35_GALPY)

HSP 1 Score: 73.9 bits (180), Expect = 8.060e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   37 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            L  LGRFG T F+ PLYG GE+PQ FCRM AV+G +Y LRR+++  +VD+ +GR
Sbjct:  371 LQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRRKVQCLVVDKESGR 424
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI001879B1BA (rab proteins geranylgeranyltransferase component A 2 n=3 Tax=Phyllostomidae TaxID=9415 RepID=UPI001879B1BA)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   37 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            L  LGRFG T F+ PLYG GE+PQ FCRM AV+G +Y LR Q++  +VD+ +GR
Sbjct:  363 LQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHQVQCLVVDKESGR 416
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A669PHX1_PHACC (Rab proteins geranylgeranyltransferase component A n=16 Tax=Galliformes TaxID=8976 RepID=A0A669PHX1_PHACC)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            NT   L    + L  LGR+G T F+ PLYG GE+PQ FCRM AV+G +Y LR  ++  +VD+ +GR
Sbjct:  347 NTLEGLQATRKFLQCLGRYGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHSVQCLVVDKESGR 412
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BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A1D5PAT3_CHICK (Rab proteins geranylgeranyltransferase component A n=18 Tax=Galliformes TaxID=8976 RepID=A0A1D5PAT3_CHICK)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 198
            NT   L    + L  LGR+G T F+ PLYG GE+PQ FCRM AV+G +Y LR  ++  +VD+ +GR
Sbjct:  346 NTLEGLQATRKFLQCLGRYGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHSVQCLVVDKESGR 411
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIG7_ECTSI1.770e-2272.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A443R773_9ACAR7.380e-1658.33Rab proteins geranylgeranyltransferase component A... [more]
UPI001E1B562B2.310e-1457.41rab proteins geranylgeranyltransferase component A... [more]
UPI0003342E7E2.310e-1459.26rab proteins geranylgeranyltransferase component A... [more]
A0A6J0CTU4_PERMB5.890e-1461.11Rab proteins geranylgeranyltransferase component A... [more]
UPI001402C2D25.910e-1451.52rab proteins geranylgeranyltransferase component A... [more]
A0A8J6DP35_GALPY8.060e-1457.41Rab proteins geranylgeranyltransferase component A... [more]
UPI001879B1BA1.100e-1357.41rab proteins geranylgeranyltransferase component A... [more]
A0A669PHX1_PHACC1.100e-1348.48Rab proteins geranylgeranyltransferase component A... [more]
A0A1D5PAT3_CHICK1.100e-1348.48Rab proteins geranylgeranyltransferase component A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76575contigH-elongata_contig76575:2478..2678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5.3e-19
Seed eggNOG ortholog2880.D8LIG7
KEGG koko:K03377,ko:K11450,ko:K17255,ko:K17878
KEGG Pathwayko04714,map04714
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005968,GO:0008150,GO:0009889,GO:0009893,GO:0010556,GO:0010604,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0031267,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:1902494,GO:1990234,GO:2000112,GO:2000539,GO:2000541
EggNOG free text desc.Rab GDP-dissociation inhibitor activity
EggNOG OGsCOG5044@1,KOG4405@2759
EC2.1.1.1,2.3.1.45
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.9711628-CDS-H-elongata_contig76575:2477..26781622931169.9711628-CDS-H-elongata_contig76575:2477..2678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76575 2478..2678 -
1691679727.0148377-CDS-H-elongata_contig76575:2477..26781691679727.0148377-CDS-H-elongata_contig76575:2477..2678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76575 2478..2678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76575.15328.1prot_H-elongata_contig76575.15328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76575 2478..2678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76575.15328.1

>prot_H-elongata_contig76575.15328.1 ID=prot_H-elongata_contig76575.15328.1|Name=mRNA_H-elongata_contig76575.15328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYV
LRRQLKGAIVDRVTGR*
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mRNA from alignment at H-elongata_contig76575:2478..2678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76575.15328.1 ID=mRNA_H-elongata_contig76575.15328.1|Name=mRNA_H-elongata_contig76575.15328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig76575:2478..2678- (Himanthalia elongata Himel1 dioecious)
AACACATCGCACGAATTGCTGTTGATTAACAGGCACCTCTCCGCCCTGGG
CCGTTTTGGCGAAACGGCGTTTATTTCGCCGCTTTACGGCATGGGCGAGC
TCCCGCAGTCCTTCTGTCGGATGGCCGCCGTCTACGGCGCCGTCTACGTG
CTCCGGCGGCAGCTGAAGGGAGCGATCGTCGACCGTGTTACCGGCAGGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig76575:2478..2678-

>mRNA_H-elongata_contig76575.15328.1 ID=mRNA_H-elongata_contig76575.15328.1|Name=mRNA_H-elongata_contig76575.15328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig76575:2478..2678- (Himanthalia elongata Himel1 dioecious)
AACACATCGCACGAATTGCTGTTGATTAACAGGCACCTCTCCGCCCTGGG
CCGTTTTGGCGAAACGGCGTTTATTTCGCCGCTTTACGGCATGGGCGAGC
TCCCGCAGTCCTTCTGTCGGATGGCCGCCGTCTACGGCGCCGTCTACGTG
CTCCGGCGGCAGCTGAAGGGAGCGATCGTCGACCGTGTTACCGGCAGGTG
AAACACATCGCACGAATTGCTGTTGATTAACAGGCACCTCTCCGCCCTGG
GCCGTTTTGGCGAAACGGCGTTTATTTCGCCGCTTTACGGCATGGGCGAG
CTCCCGCAGTCCTTCTGTCGGATGGCCGCCGTCTACGGCGCCGTCTACGT
GCTCCGGCGGCAGCTGAAGGGAGCGATCGTCGACCGTGTTACCGGCAGGT
GA
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