mRNA_H-elongata_contig76498.15323.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76498.15323.1
Unique NamemRNA_H-elongata_contig76498.15323.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76498.15323.1 vs. uniprot
Match: A0A6H5KNB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.170e-30
Identity = 96/247 (38.87%), Postives = 126/247 (51.01%), Query Frame = 1 
Query:    1 AEAGEWRLLLGFARYLVWNDFLFLPQALPDLPRRAKDGDDSLPRKSGSSTAMG--SPGARVSQSKPRRADPEAPAPVLTMGDTKGSQKSQVGQGSRAQHPDNGIVE-RVRVTK--------RSLVAPRWFDPDKDLCAGCWAARTG-----GSKCGRCGRGRRKNLAEARSRRGPAVSAEKGGRKQGQQQGPVTWQEFRKVRSPLELFVFHAAYACVLHPGFSRRELPPGS--GGIGWWDGGSAEEA 687
            AEAGEW LLLGFA +LV +  + LP  LP LPR++     S+   + S   +G  S  A       RR   E  AP L  GD   +Q  Q G  ++ QH  +     R+  T         ++  AP+WF   K LC  CWA RTG     GSKC RCGR   +  +   S+RG  V+A+           PV  Q+F +V+  L+LF+ HAAYACVLHPG +      G   GG+GWW+GG  E+A
Sbjct:  883 AEAGEWLLLLGFAHHLVSDGHVGLPCTLPALPRKS-----SIKGPTSSIKVVGVMSKQANYFLGPVRRKRVEY-APRLE-GDAPAAQCQQQGPVAKEQHGQHHQPSARLYATGPTHQGGQGQATSAPKWFSAHKSLCETCWALRTGASGAGGSKCQRCGRTHVRGFSHESSKRGGDVTAD-----------PVPLQQFSQVKESLDLFIVHAAYACVLHPGPANNATVAGGLGGGLGWWNGGDTEQA 1111
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BLAST of mRNA_H-elongata_contig76498.15323.1 vs. uniprot
Match: D8LN60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN60_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 6.160e-6
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  550 KVRSPLELFVFHAAYACVLHPG-FSRRELPPG-SGGIGWWDGGSAEEA 687
            KV+  L+LF+ HAAYACVLHPG  S   +  G  GG+GWW+GG  E+A
Sbjct:  938 KVKESLDLFIVHAAYACVLHPGPLSNAMVAAGLGGGLGWWNGGDTEQA 985
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76498.15323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNB2_9PHAE1.170e-3038.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN60_ECTSI6.160e-656.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76498contigH-elongata_contig76498:210..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003620.1
Exons2
Model size687
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.2167678-CDS-H-elongata_contig76498:209..7681622931169.2167678-CDS-H-elongata_contig76498:209..768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76498 210..768 +
1691679726.6714275-CDS-H-elongata_contig76498:209..7681691679726.6714275-CDS-H-elongata_contig76498:209..768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76498 210..768 +
1622931169.2406812-CDS-H-elongata_contig76498:1664..17921622931169.2406812-CDS-H-elongata_contig76498:1664..1792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76498 1665..1792 +
1691679726.6841776-CDS-H-elongata_contig76498:1664..17921691679726.6841776-CDS-H-elongata_contig76498:1664..1792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76498 1665..1792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76498.15323.1prot_H-elongata_contig76498.15323.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76498 210..1792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76498.15323.1

>prot_H-elongata_contig76498.15323.1 ID=prot_H-elongata_contig76498.15323.1|Name=mRNA_H-elongata_contig76498.15323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
AEAGEWRLLLGFARYLVWNDFLFLPQALPDLPRRAKDGDDSLPRKSGSST
AMGSPGARVSQSKPRRADPEAPAPVLTMGDTKGSQKSQVGQGSRAQHPDN
GIVERVRVTKRSLVAPRWFDPDKDLCAGCWAARTGGSKCGRCGRGRRKNL
AEARSRRGPAVSAEKGGRKQGQQQGPVTWQEFRKVRSPLELFVFHAAYAC
VLHPGFSRRELPPGSGGIGWWDGGSAEEA
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mRNA from alignment at H-elongata_contig76498:210..1792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76498.15323.1 ID=mRNA_H-elongata_contig76498.15323.1|Name=mRNA_H-elongata_contig76498.15323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1583bp|location=Sequence derived from alignment at H-elongata_contig76498:210..1792+ (Himanthalia elongata Himel1 dioecious)
GCGGAGGCAGGCGAGTGGAGGTTGCTGTTGGGCTTCGCGAGATATCTTGT
TTGGAACGACTTCCTCTTCCTACCCCAAGCACTGCCCGACCTTCCTCGGC
GCGCTAAGGACGGCGACGACTCCTTGCCCAGAAAGTCGGGTTCATCAACG
GCGATGGGATCACCAGGAGCGAGAGTCTCCCAGTCGAAGCCTCGACGGGC
CGATCCAGAGGCTCCAGCGCCGGTGCTAACCATGGGAGACACCAAGGGTT
CACAAAAGTCACAGGTAGGTCAAGGGTCGAGAGCGCAGCATCCGGATAAT
GGAATCGTCGAAAGAGTGAGGGTCACAAAGAGATCGCTCGTGGCACCGAG
ATGGTTCGATCCGGACAAGGACCTTTGCGCGGGCTGCTGGGCCGCGCGGA
CGGGTGGCTCGAAGTGTGGGAGGTGTGGTCGAGGCCGACGTAAAAACCTT
GCGGAGGCCAGGTCAAGGAGGGGACCGGCGGTCAGCGCCGAGAAAGGAGG
ACGAAAACAGGGACAACAACAGGGACCAGTAACGTGGCAAGAATTTCGGA
AGGTCAGATGTGATGGTCAGGCTGAACTGGGAGGTACCGCGCAGGGATAC
CCTTGGTCGATATCGGGGTTCGTGATAGAGGCGCCAGTCATCTGAATATC
CTCTGGATTTGGTCGTCTCCAAGTCTTGAGATATGCGAAGTGCAGAGTCG
CCCAGCCGGGCGACACTCTCTAACGGACCAATCCAAAGATTGAAGGGGAG
GGGACGTAACATAATTGTCCCCACTTTTCGGAGGGGAGGGTCCTAATTTG
TCCCCTTCCGGAAATTGAATCGTTGTTTTCCCGGTAGTAGTGCTTCAAAT
ATGATAATATATAACTATAGCAAAAGAGGGAGGTGATAACGTTTTTCCTC
TGGAGGGGAAGAATTTAACATGCTTCCTCCACTAACCGGGGCGTTTTCTT
AAGTTCTCCCCTCCCCCATATCGTTGGATTGCTCAACGGCTAGTATTGGA
TATTTCCGTTAGCAGTGATCTTCATGCCCTCTACGGGTGGCGTTGCGTTT
TTCGAACTTCCGTTCCCTGAGTTTTCCTTCTAGGGGTTTTGCGCCAAAGA
GTTTAAACGTCGCGTATAGAGCGAGCTTACGCGCCCTCCGTCGAGGGTGA
TTACCTTGGTAAGCACACGGCCTGTTAAAAGGAATGGAGATCATGTTTAT
TACCTGTTCTACTCAGTATCACAGAGAAAATGGTTCCGATATGGTGATGA
TGCTGATGATGCTGATGATGATGCTGATGATGCTGCTGATGATGATGATG
ATGATGATGATGCTGATGATGATGATGATGATGCTGATGCTGATGGTGAT
GGTGATGATGATGCTGATAGATATAGAGAGGCTTCAATCTCAATCTCAAT
CTCAATCTCAATCTCCTCCCGTCCTCTATCTCTCTATCGCTAAAATAGAT
CGGAGCCCCCTTGGAGCTGTTCGTCTTCCACGCCGCTTACGCTTGCGTCC
TCCATCCGGGGTTTTCCCGTCGAGAACTTCCCCCAGGCAGCGGCGGCATC
GGGTGGTGGGATGGCGGTAGCGCTGAAGAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig76498:210..1792+

>mRNA_H-elongata_contig76498.15323.1 ID=mRNA_H-elongata_contig76498.15323.1|Name=mRNA_H-elongata_contig76498.15323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig76498:210..1792+ (Himanthalia elongata Himel1 dioecious)
GCGGAGGCAGGCGAGTGGAGGTTGCTGTTGGGCTTCGCGAGATATCTTGT
TTGGAACGACTTCCTCTTCCTACCCCAAGCACTGCCCGACCTTCCTCGGC
GCGCTAAGGACGGCGACGACTCCTTGCCCAGAAAGTCGGGTTCATCAACG
GCGATGGGATCACCAGGAGCGAGAGTCTCCCAGTCGAAGCCTCGACGGGC
CGATCCAGAGGCTCCAGCGCCGGTGCTAACCATGGGAGACACCAAGGGTT
CACAAAAGTCACAGGTAGGTCAAGGGTCGAGAGCGCAGCATCCGGATAAT
GGAATCGTCGAAAGAGTGAGGGTCACAAAGAGATCGCTCGTGGCACCGAG
ATGGTTCGATCCGGACAAGGACCTTTGCGCGGGCTGCTGGGCCGCGCGGA
CGGGTGGCTCGAAGTGTGGGAGGTGTGGTCGAGGCCGACGTAAAAACCTT
GCGGAGGCCAGGTCAAGGAGGGGACCGGCGGTCAGCGCCGAGAAAGGAGG
ACGAAAACAGGGACAACAACAGGGACCAGTAACGTGGCAAGAATTTCGGA
AGGTCAGATGCGGAGGCAGGCGAGTGGAGGTTGCTGTTGGGCTTCGCGAG
ATATCTTGTTTGGAACGACTTCCTCTTCCTACCCCAAGCACTGCCCGACC
TTCCTCGGCGCGCTAAGGACGGCGACGACTCCTTGCCCAGAAAGTCGGGT
TCATCAACGGCGATGGGATCACCAGGAGCGAGAGTCTCCCAGTCGAAGCC
TCGACGGGCCGATCCAGAGGCTCCAGCGCCGGTGCTAACCATGGGAGACA
CCAAGGGTTCACAAAAGTCACAGGTAGGTCAAGGGTCGAGAGCGCAGCAT
CCGGATAATGGAATCGTCGAAAGAGTGAGGGTCACAAAGAGATCGCTCGT
GGCACCGAGATGGTTCGATCCGGACAAGGACCTTTGCGCGGGCTGCTGGG
CCGCGCGGACGGGTGGCTCGAAGTGTGGGAGGTGTGGTCGAGGCCGACGT
AAAAACCTTGCGGAGGCCAGGTCAAGGAGGGGACCGGCGGTCAGCGCCGA
GAAAGGAGGACGAAAACAGGGACAACAACAGGGACCAGTAACGTGGCAAG
AATTTCGGAAGGTCAGATCCCCCTTGGAGCTGTTCGTCTTCCACGCCGCT
TACGCTTGCGTCCTCCATCCGGGGTTTTCCCGTCGAGAACTTCCCCCAGG
CAGCGGCGGCATCGGGTGGTGGGATGGCGGTAGCGCTGAAGAGGCACCCC
CTTGGAGCTGTTCGTCTTCCACGCCGCTTACGCTTGCGTCCTCCATCCGG
GGTTTTCCCGTCGAGAACTTCCCCCAGGCAGCGGCGGCATCGGGTGGTGG
GATGGCGGTAGCGCTGAAGAGGCA
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