mRNA_H-elongata_contig76479.15320.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76479.15320.1
Unique NamemRNA_H-elongata_contig76479.15320.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK)

HSP 1 Score: 160 bits (404), Expect = 1.450e-46
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            EASYVNVPVIAFCDSDSPL NVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTI+R +PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct:  162 EASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQA 244          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.190e-45
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            EASYVNVPVIAFCDSDSPLQNVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R   WDVPVDLFFYREPEELEKAEEAQA
Sbjct:  138 EASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQA 220          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN)

HSP 1 Score: 154 bits (389), Expect = 1.250e-45
Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            EASYVN+PVIAFCDSDSP Q+VDVAIP+NNKGKLSIGLLYWLLARE+LRMRGT+ R +PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct:  130 EASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.460e-45
Identity = 75/83 (90.36%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            EASYVN+PVIAFCDSDSPLQ+VDVAIP+NNKGKLSIGLLYWLLAREVLRMRGT++R +PWDVPVDLFFYR+PEELEKAEEAQA
Sbjct:  207 EASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQA 289          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.670e-42
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQ 246
            E++YVNVPVIAFCDSDSPL+ VDVAIPANNKGKLSIGLLYWLL+REVLR+RGTI+R  PWDV VDLFFYR+PEELEKAEEAQ
Sbjct:  130 ESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQ 211          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: D0MUE8_PHYIT (40S ribosomal protein SA n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0MUE8_PHYIT)

HSP 1 Score: 147 bits (372), Expect = 2.610e-42
Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+R  PWDV VDLF YR+PEEL+KAEEAQA
Sbjct:  130 ESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRTLPWDVAVDLFLYRDPEELKKAEEAQA 212          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A5D6XMB2_9STRA (40S ribosomal protein SA n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMB2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.600e-42
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+R  PWDV VDLF YR+PEEL+KAEEAQ+
Sbjct:  130 ESSFVNVPVIAFCDSDSPLQYVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQS 212          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A6V2AV66_9STRA (40S ribosomal protein SA n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AV66_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.500e-42
Identity = 69/82 (84.15%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQ 246
            EASYVNVPVIAFCDSDSPLQ+VDVAIPANNKGKLSIGLLYWLLAREVLR+RG+++R S WDVPVDLFF+R+PE+L+KA+E Q
Sbjct:  139 EASYVNVPVIAFCDSDSPLQHVDVAIPANNKGKLSIGLLYWLLAREVLRLRGSVSRSSDWDVPVDLFFHRDPEDLKKADEEQ 220          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A0W8CTG1_PHYNI (40S ribosomal protein SA n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CTG1_PHYNI)

HSP 1 Score: 147 bits (372), Expect = 5.590e-42
Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+R  PWDV VDLF YR+PEEL+KAEEAQA
Sbjct:  130 ESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQA 212          
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: M4BW24_HYAAE (40S ribosomal protein SA n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW24_HYAAE)

HSP 1 Score: 145 bits (367), Expect = 1.210e-41
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
            E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+   PWDV VDLF YR+PEEL+KAEEAQA
Sbjct:  120 ESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISHSLPWDVVVDLFLYRDPEELKKAEEAQA 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAK2_HETAK1.450e-4692.7740S ribosomal protein SA n=2 Tax=Heterosigma akash... [more]
D7FHP2_ECTSI1.190e-4593.9840S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=... [more]
F0Y9V2_AURAN1.250e-4586.75Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SYU6_9STRA1.460e-4590.3640S ribosomal protein SA n=1 Tax=Pelagomonas calce... [more]
A0A1V9ZU98_9STRA1.670e-4286.5940S ribosomal protein SA n=3 Tax=Saprolegniaceae T... [more]
D0MUE8_PHYIT2.610e-4286.7540S ribosomal protein SA n=15 Tax=Peronosporaceae ... [more]
A0A5D6XMB2_9STRA4.600e-4285.5440S ribosomal protein SA n=1 Tax=Pythium brassicum... [more]
A0A6V2AV66_9STRA5.500e-4284.1540S ribosomal protein SA n=2 Tax=Ditylum brightwel... [more]
A0A0W8CTG1_PHYNI5.590e-4286.7540S ribosomal protein SA n=2 Tax=Phytophthora TaxI... [more]
M4BW24_HYAAE1.210e-4185.5440S ribosomal protein SA n=1 Tax=Hyaloperonospora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76479contigH-elongata_contig76479:138..676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D7FHP2
Preferred nameRPS0
KEGG koko:K02998
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031123,GO:0031125,GO:0031503,GO:0032991,GO:0033036,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0830@2759
Ec32 ortholog descriptionRibosomal protein S2, flavodoxin-like domain
Ec32 orthologEc-07_006200.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.034161-CDS-H-elongata_contig76479:137..3081622931169.034161-CDS-H-elongata_contig76479:137..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76479 138..308 +
1691679726.5916598-CDS-H-elongata_contig76479:137..3081691679726.5916598-CDS-H-elongata_contig76479:137..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76479 138..308 +
1622931169.0538213-CDS-H-elongata_contig76479:598..6761622931169.0538213-CDS-H-elongata_contig76479:598..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76479 599..676 +
1691679726.6061006-CDS-H-elongata_contig76479:598..6761691679726.6061006-CDS-H-elongata_contig76479:598..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76479 599..676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76479.15320.1prot_H-elongata_contig76479.15320.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76479 138..676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76479.15320.1

>prot_H-elongata_contig76479.15320.1 ID=prot_H-elongata_contig76479.15320.1|Name=mRNA_H-elongata_contig76479.15320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRM
RGTITRQSPWDVPVDLFFYREPEELEKAEEAQA
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mRNA from alignment at H-elongata_contig76479:138..676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76479.15320.1 ID=mRNA_H-elongata_contig76479.15320.1|Name=mRNA_H-elongata_contig76479.15320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig76479:138..676+ (Himanthalia elongata Himel1 dioecious)
GAAGCATCCTACGTGAATGTTCCCGTGATCGCCTTCTGCGACAGCGACTC CCCGCTGCAGAACGTGGACGTGGCGATACCGGCGAACAACAAGGGAAAGC TGTCCATCGGCCTCCTGTACTGGCTGCTGGCGAGGGAGGTTCTCCGCATG CGGGGCACCATCACCCGCCAGGTGCCACCCGCGCCACTAATACCTCTTTC GTGTCGCGTTGTCTCGGGCTTTGGGGGTGCAAATATACAGTGAAGATAAC GCGCGACCGGGAGGAAAGGGCTTGGTCGTACTCTGTCGAGCGAGGCCTTT TCTGTGATCACATATTCGTTAGTCGAAAAACCGTCGTTAAGCTCGGAGCC GACGCGTCAAAAAAAAATGCGTCGCCAACATCTCTAGCCCTCTTCCCCAT ATGTATGCCCCGTCCCCCTCTCCACATGCATACCCCCATCTATGTCGCGC CACTTTTAAAGAGTCCCTGGGATGTACCGGTGGACCTCTTCTTCTACCGC GAGCCGGAAGAGCTCGAGAAGGCCGAAGAGGCTCAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig76479:138..676+

>mRNA_H-elongata_contig76479.15320.1 ID=mRNA_H-elongata_contig76479.15320.1|Name=mRNA_H-elongata_contig76479.15320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig76479:138..676+ (Himanthalia elongata Himel1 dioecious)
GAAGCATCCTACGTGAATGTTCCCGTGATCGCCTTCTGCGACAGCGACTC
CCCGCTGCAGAACGTGGACGTGGCGATACCGGCGAACAACAAGGGAAAGC
TGTCCATCGGCCTCCTGTACTGGCTGCTGGCGAGGGAGGTTCTCCGCATG
CGGGGCACCATCACCCGCCAGGAAGCATCCTACGTGAATGTTCCCGTGAT
CGCCTTCTGCGACAGCGACTCCCCGCTGCAGAACGTGGACGTGGCGATAC
CGGCGAACAACAAGGGAAAGCTGTCCATCGGCCTCCTGTACTGGCTGCTG
GCGAGGGAGGTTCTCCGCATGCGGGGCACCATCACCCGCCAGAGTCCCTG
GGATGTACCGGTGGACCTCTTCTTCTACCGCGAGCCGGAAGAGCTCGAGA
AGGCCGAAGAGGCTCAGGCGAGTCCCTGGGATGTACCGGTGGACCTCTTC
TTCTACCGCGAGCCGGAAGAGCTCGAGAAGGCCGAAGAGGCTCAGGCG
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