mRNA_H-elongata_contig76479.15320.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK) HSP 1 Score: 160 bits (404), Expect = 1.450e-46 Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
EASYVNVPVIAFCDSDSPL NVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTI+R +PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct: 162 EASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQA 244
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.190e-45 Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
EASYVNVPVIAFCDSDSPLQNVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R WDVPVDLFFYREPEELEKAEEAQA
Sbjct: 138 EASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQA 220
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN) HSP 1 Score: 154 bits (389), Expect = 1.250e-45 Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
EASYVN+PVIAFCDSDSP Q+VDVAIP+NNKGKLSIGLLYWLLARE+LRMRGT+ R +PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct: 130 EASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.460e-45 Identity = 75/83 (90.36%), Postives = 82/83 (98.80%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
EASYVN+PVIAFCDSDSPLQ+VDVAIP+NNKGKLSIGLLYWLLAREVLRMRGT++R +PWDVPVDLFFYR+PEELEKAEEAQA
Sbjct: 207 EASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQA 289
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.670e-42 Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQ 246
E++YVNVPVIAFCDSDSPL+ VDVAIPANNKGKLSIGLLYWLL+REVLR+RGTI+R PWDV VDLFFYR+PEELEKAEEAQ
Sbjct: 130 ESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQ 211
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: D0MUE8_PHYIT (40S ribosomal protein SA n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0MUE8_PHYIT) HSP 1 Score: 147 bits (372), Expect = 2.610e-42 Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+R PWDV VDLF YR+PEEL+KAEEAQA
Sbjct: 130 ESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRTLPWDVAVDLFLYRDPEELKKAEEAQA 212
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A5D6XMB2_9STRA (40S ribosomal protein SA n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMB2_9STRA) HSP 1 Score: 147 bits (370), Expect = 4.600e-42 Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+R PWDV VDLF YR+PEEL+KAEEAQ+
Sbjct: 130 ESSFVNVPVIAFCDSDSPLQYVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQS 212
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A6V2AV66_9STRA (40S ribosomal protein SA n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AV66_9STRA) HSP 1 Score: 147 bits (371), Expect = 5.500e-42 Identity = 69/82 (84.15%), Postives = 79/82 (96.34%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQ 246
EASYVNVPVIAFCDSDSPLQ+VDVAIPANNKGKLSIGLLYWLLAREVLR+RG+++R S WDVPVDLFF+R+PE+L+KA+E Q
Sbjct: 139 EASYVNVPVIAFCDSDSPLQHVDVAIPANNKGKLSIGLLYWLLAREVLRLRGSVSRSSDWDVPVDLFFHRDPEDLKKADEEQ 220
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: A0A0W8CTG1_PHYNI (40S ribosomal protein SA n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CTG1_PHYNI) HSP 1 Score: 147 bits (372), Expect = 5.590e-42 Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+R PWDV VDLF YR+PEEL+KAEEAQA
Sbjct: 130 ESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQA 212
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Match: M4BW24_HYAAE (40S ribosomal protein SA n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW24_HYAAE) HSP 1 Score: 145 bits (367), Expect = 1.210e-41 Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query: 1 EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTITRQSPWDVPVDLFFYREPEELEKAEEAQA 249
E+S+VNVPVIAFCDSDSPLQ VDVAIPANNKGKLSIGLLYWLLAREVLR+RGTI+ PWDV VDLF YR+PEEL+KAEEAQA
Sbjct: 120 ESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISHSLPWDVVVDLFLYRDPEELKKAEEAQA 202 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76479.15320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76479.15320.1 >prot_H-elongata_contig76479.15320.1 ID=prot_H-elongata_contig76479.15320.1|Name=mRNA_H-elongata_contig76479.15320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp EASYVNVPVIAFCDSDSPLQNVDVAIPANNKGKLSIGLLYWLLAREVLRMback to top mRNA from alignment at H-elongata_contig76479:138..676+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76479.15320.1 ID=mRNA_H-elongata_contig76479.15320.1|Name=mRNA_H-elongata_contig76479.15320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig76479:138..676+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76479:138..676+ >mRNA_H-elongata_contig76479.15320.1 ID=mRNA_H-elongata_contig76479.15320.1|Name=mRNA_H-elongata_contig76479.15320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig76479:138..676+ (Himanthalia elongata Himel1 dioecious)back to top |