mRNA_H-elongata_contig76420.15316.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76420.15316.1
Unique NamemRNA_H-elongata_contig76420.15316.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76420.15316.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.960e-18
Identity = 71/153 (46.41%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:   58 RLRPNSPHSSSQRTRTFLGREGEHSSVGSIGGRSGAGASWPISRPSTYRAGSSGGHEG---SPILRTHQAPGGFSHKITPSPTFPATQ-MTSGRSGTKRPETPLAVRGYYSRNSSPSNRPVISAGASGXXXXXXXGVGVGTSVRGRFFPMSSS 504
            R+  NSPHSS++    +             GGRS    SWPI RP+T R GS  G  G   SP+LR     G  SH +TPSPTF A Q M+ GR   KRPETP+ VRGYYSRN+SP NR   S+GA G       GVG  +S    FFP S +
Sbjct:  275 RIGTNSPHSSNRGVAGYAAG----------GGRSSR-PSWPIPRPNTSRGGSGNGATGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPMEVRGYYSRNASPGNR---SSGAGG-------GVGARSSS---FFPSSKA 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76420.15316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDC0_ECTSI1.960e-1846.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76420contigH-elongata_contig76420:299..1800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D8LDC0
EggNOG OGs2C3BQ@1,2SGWG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size830
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76420.15316.1prot_H-elongata_contig76420.15316.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76420 308..1489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.7340806-UTR-H-elongata_contig76420:298..3071622931168.7340806-UTR-H-elongata_contig76420:298..307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76420 299..307 +
1691679726.4861436-UTR-H-elongata_contig76420:298..3071691679726.4861436-UTR-H-elongata_contig76420:298..307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76420 299..307 +
1622931168.8022912-UTR-H-elongata_contig76420:1489..18001622931168.8022912-UTR-H-elongata_contig76420:1489..1800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76420 1490..1800 +
1691679726.5256178-UTR-H-elongata_contig76420:1489..18001691679726.5256178-UTR-H-elongata_contig76420:1489..1800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76420 1490..1800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.7498443-CDS-H-elongata_contig76420:307..3931622931168.7498443-CDS-H-elongata_contig76420:307..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76420 308..393 +
1691679726.5016723-CDS-H-elongata_contig76420:307..3931691679726.5016723-CDS-H-elongata_contig76420:307..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76420 308..393 +
1622931168.772073-CDS-H-elongata_contig76420:827..10471622931168.772073-CDS-H-elongata_contig76420:827..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76420 828..1047 +
1691679726.5101383-CDS-H-elongata_contig76420:827..10471691679726.5101383-CDS-H-elongata_contig76420:827..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76420 828..1047 +
1622931168.7854688-CDS-H-elongata_contig76420:1285..14891622931168.7854688-CDS-H-elongata_contig76420:1285..1489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76420 1286..1489 +
1691679726.5178437-CDS-H-elongata_contig76420:1285..14891691679726.5178437-CDS-H-elongata_contig76420:1285..1489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76420 1286..1489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76420.15316.1

>prot_H-elongata_contig76420.15316.1 ID=prot_H-elongata_contig76420.15316.1|Name=mRNA_H-elongata_contig76420.15316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MQQREESSRENVFGDGRLRPNSPHSSSQRTRTFLGREGEHSSVGSIGGRS
GAGASWPISRPSTYRAGSSGGHEGSPILRTHQAPGGFSHKITPSPTFPAT
QMTSGRSGTKRPETPLAVRGYYSRNSSPSNRPVISAGASGGGGGGANGVG
VGTSVRGRFFPMSSSNALF*
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mRNA from alignment at H-elongata_contig76420:299..1800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76420.15316.1 ID=mRNA_H-elongata_contig76420.15316.1|Name=mRNA_H-elongata_contig76420.15316.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1502bp|location=Sequence derived from alignment at H-elongata_contig76420:299..1800+ (Himanthalia elongata Himel1 dioecious)
GTAACGCCAATGCAGCAGCGTGAGGAATCTTCCCGAGAGAATGTTTTTGG
AGATGGCCGCCTTCGTCCGAACTCCCCGCATTCAAGCAGTCAAAGGTGGG
TAAAGAGTAGTCATGGTGTCAGTAGCATCTGACTTGCTGACGTACTGTTA
TCTATGAAACCCAACCCCTCGATGAAGACAGCCATGGGAGTTCTCTACTC
GCATACGTGGTATGTATTCTAGCTACATTATTAGCTAAATATGTCGCGTA
TGCTCCCAGGACCATGCACTTTCAGCCTAAGGGTCTAGCACGCAAAGTCG
CATTTTTGCGTATCACTCGGATTTTCGGTAACGGATTCTCACGAAGCACC
CCAAACTGCGCTTTGCATAACTCAAGATGTTGGGGCCTCAACATGAAATT
GTTTAAAAAAAAAGAGGCCGAGAATGACAAAATAAGACACACAAGATTAA
GCATTCGAGTTGCGTCCTGTACTTTCCGTAACCTACGGCATGGTTAAGTC
TATTCCCATCGGCGAGCGTTTCACCTCAGGACCAGAACGTTTCTAGGAAG
AGAGGGGGAGCACAGCAGTGTCGGGAGTATCGGGGGAAGATCCGGCGCGG
GAGCTTCATGGCCGATATCTCGCCCATCGACGTACAGGGCCGGAAGCTCG
GGTGGCCATGAGGGCAGTCCCATACTACGCACCCATCAAGCCCCGGGAGG
ATTCTCGCACAAGATCACCCCGTCTCCGACTTTCCCTGCCACACAAATGG
TGATGCTGGCTACTTGCCGAAGTGTTTATCGTAATGACGCATCCCACAAC
GAACGGCATATCGAACACGTAGGCCCTTTCGCTAGGTCTACCGAGCGGGA
TCAGTGAAACGAGGCGCTGTCACGTCATATACAAATAGCGGAGAACCCAA
TTCTTAGGCTACCGGTCTGAGTCATGACCGAACGCGTTTCACAACCACTT
ACCAACCAAACACACCCAATCACTCCGTGACCTCTAGACATCTGGAAGAT
CGGGAACCAAGCGGCCGGAGACTCCACTTGCTGTGAGGGGATACTACTCT
CGGAACTCCTCCCCCAGCAATAGACCAGTCATCTCTGCTGGGGCTAGCGG
GGGAGGTGGAGGAGGAGCAAATGGTGTTGGTGTGGGCACCAGCGTGAGAG
GGAGGTTCTTCCCCATGAGTAGCTCCAACGCTCTATTCTAGGAAGCTAGA
TGCCGAAATGGAAAAAATTAGGTTGTGTACAGCAAGGAAAGAAAGGGTTT
GGAGGAGAAAGAATCATCCACCCAGAAACACTTCGAGGTTGAGCAAGCGG
GTGCTCGACAATCGCGTTCGAGATTACACACAGTATATGAAAGAGTGGTA
CATGAAGATGCTCGTGAAATTATGCCACATTGTAAATGCATCCTTGTTTC
GGGAGTCGGATGTACGAGCGAGCGCGGATGGCGACATATTCCCGGGATAT
TGTCGCAGATGAACGTGGGCGGGATGTATGATAGGTGTGGAGACAACCGT
GG
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Coding sequence (CDS) from alignment at H-elongata_contig76420:299..1800+

>mRNA_H-elongata_contig76420.15316.1 ID=mRNA_H-elongata_contig76420.15316.1|Name=mRNA_H-elongata_contig76420.15316.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig76420:299..1800+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCAGCGTGAGGAATCTTCCCGAGAGAATGTTTTTGGAGATGGCCG
CCTTCGTCCGAACTCCCCGCATTCAAGCAGTCAAAGATGCAGCAGCGTGA
GGAATCTTCCCGAGAGAATGTTTTTGGAGATGGCCGCCTTCGTCCGAACT
CCCCGCATTCAAGCAGTCAAAGGACCAGAACGTTTCTAGGAAGAGAGGGG
GAGCACAGCAGTGTCGGGAGTATCGGGGGAAGATCCGGCGCGGGAGCTTC
ATGGCCGATATCTCGCCCATCGACGTACAGGGCCGGAAGCTCGGGTGGCC
ATGAGGGCAGTCCCATACTACGCACCCATCAAGCCCCGGGAGGATTCTCG
CACAAGATCACCCCGTCTCCGACTTTCCCTGCCACACAAATGGACCAGAA
CGTTTCTAGGAAGAGAGGGGGAGCACAGCAGTGTCGGGAGTATCGGGGGA
AGATCCGGCGCGGGAGCTTCATGGCCGATATCTCGCCCATCGACGTACAG
GGCCGGAAGCTCGGGTGGCCATGAGGGCAGTCCCATACTACGCACCCATC
AAGCCCCGGGAGGATTCTCGCACAAGATCACCCCGTCTCCGACTTTCCCT
GCCACACAAATGACATCTGGAAGATCGGGAACCAAGCGGCCGGAGACTCC
ACTTGCTGTGAGGGGATACTACTCTCGGAACTCCTCCCCCAGCAATAGAC
CAGTCATCTCTGCTGGGGCTAGCGGGGGAGGTGGAGGAGGAGCAAATGGT
GTTGGTGTGGGCACCAGCGTGAGAGGGAGGTTCTTCCCCATGAGTAGCTC
CAACGCTCTATTCTAGACATCTGGAAGATCGGGAACCAAGCGGCCGGAGA
CTCCACTTGCTGTGAGGGGATACTACTCTCGGAACTCCTCCCCCAGCAAT
AGACCAGTCATCTCTGCTGGGGCTAGCGGGGGAGGTGGAGGAGGAGCAAA
TGGTGTTGGTGTGGGCACCAGCGTGAGAGGGAGGTTCTTCCCCATGAGTA
GCTCCAACGCTCTATTCTAG
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