mRNA_H-elongata_contig76376.15313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76376.15313.1
Unique NamemRNA_H-elongata_contig76376.15313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: UPI0012D7B3FD (protein kinase n=1 Tax=Streptococcus pneumoniae TaxID=1313 RepID=UPI0012D7B3FD)

HSP 1 Score: 49.3 bits (116), Expect = 2.150e-6
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 LMVDVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLAYGEGT 156
            +   +   VAH+H+HGFVH+DIK +NIL+ E+       KL DFGLA   GT
Sbjct:   14 IFAQIVDAVAHLHNHGFVHNDIKADNILMSEDG----VPKLCDFGLACKIGT 61          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A0A5A7R292_STRAF (Mitogen-activated protein kinase kinase kinase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R292_STRAF)

HSP 1 Score: 52.0 bits (123), Expect = 2.270e-6
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   31 HVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            H+H HG+VH D+K +NILL  +  N +TAK+SDFGLA
Sbjct:  130 HIHSHGYVHCDLKPDNILLVPDGQNGFTAKISDFGLA 166          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A0A1G0YD73_9BACT (Non-specific serine/threonine protein kinase n=2 Tax=PVC group TaxID=1783257 RepID=A0A1G0YD73_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.360e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 LMVDVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            +M+ VC+ VAH H+HG +H DIK ENILL ++       K++DFG+A
Sbjct:  153 IMISVCETVAHAHEHGVIHCDIKPENILLSDDG----RVKIADFGVA 195          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A0A352EW19_9BACT (Non-specific serine/threonine protein kinase n=2 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352EW19_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 3.900e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 LMVDVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            ++  V   ++H HDHG++H DIK +NIL+   + N  +AKL+DFGLA
Sbjct:  265 IITQVLDALSHAHDHGYIHRDIKDQNILV-RSSGNELSAKLTDFGLA 310          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: UPI0016565C25 (serine/threonine protein kinase n=1 Tax=Streptomyces sp. CB02980 TaxID=2542736 RepID=UPI0016565C25)

HSP 1 Score: 48.5 bits (114), Expect = 3.900e-5
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 LMVDVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            L+  VC+ +AH+H+ G+VH+D+K EN+L+ E+     + KLSDFGLA
Sbjct:  142 LIAGVCEGLAHLHEAGWVHADLKPENVLIGEDG----SVKLSDFGLA 184          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A0A5A7QQ80_STRAF (Mitogen-activated protein kinase kinase kinase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QQ80_STRAF)

HSP 1 Score: 48.1 bits (113), Expect = 5.220e-5
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   13 VCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLAYGEGT 156
            + + + H+H  GFVH D+K EN+LL  E     TAK+SDFGL+   GT
Sbjct:  136 ILRGLRHIHGLGFVHCDLKPENVLLVAENNGNLTAKISDFGLSKERGT 183          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: UPI001C275554 (probable serine/threonine-protein kinase PBL28 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C275554)

HSP 1 Score: 48.1 bits (113), Expect = 5.240e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 LMVDVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            ++V +C+ ++HVH  G++H D+K EN+LL     N +T KLSDFG A
Sbjct:  121 VLVGLCRALSHVHGCGYIHRDVKSENVLL----MNDFTPKLSDFGAA 163          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A5C8N9_VITVI (Protein kinase domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=A5C8N9_VITVI)

HSP 1 Score: 48.1 bits (113), Expect = 5.340e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   10 DVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            D+ + + ++H HG+VH DIK +NILL     N + AK+ DFGLA
Sbjct:  280 DIVRGLCYIHGHGYVHCDIKPDNILLVPTCCNGFRAKIGDFGLA 323          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A0A2S9XBS8_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9XBS8_9DELT)

HSP 1 Score: 48.1 bits (113), Expect = 5.370e-5
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   13 VCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            VC+ +AH H+ GFVH D+K ENI++  +A  R   K+ DFGLA
Sbjct:  160 VCKGLAHAHEVGFVHRDVKPENIMIGRDADGREQVKIVDFGLA 202          
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Match: A0A438F119_VITVI (Mitogen-activated protein kinase kinase kinase 17 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F119_VITVI)

HSP 1 Score: 48.1 bits (113), Expect = 5.380e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   10 DVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLA 141
            D+ + + ++H HG+VH DIK +NILL     N + AK+ DFGLA
Sbjct:  616 DIVRGLCYIHGHGYVHCDIKPDNILLVPTCCNGFRAKIGDFGLA 659          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76376.15313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI0012D7B3FD2.150e-648.08protein kinase n=1 Tax=Streptococcus pneumoniae Ta... [more]
A0A5A7R292_STRAF2.270e-659.46Mitogen-activated protein kinase kinase kinase n=1... [more]
A0A1G0YD73_9BACT4.360e-648.94Non-specific serine/threonine protein kinase n=2 T... [more]
A0A352EW19_9BACT3.900e-546.81Non-specific serine/threonine protein kinase n=2 T... [more]
UPI0016565C253.900e-548.94serine/threonine protein kinase n=1 Tax=Streptomyc... [more]
A0A5A7QQ80_STRAF5.220e-547.92Mitogen-activated protein kinase kinase kinase n=1... [more]
UPI001C2755545.240e-546.81probable serine/threonine-protein kinase PBL28 n=3... [more]
A5C8N9_VITVI5.340e-547.73Protein kinase domain-containing protein n=2 Tax=V... [more]
A0A2S9XBS8_9DELT5.370e-551.16Non-specific serine/threonine protein kinase n=1 T... [more]
A0A438F119_VITVI5.380e-547.73Mitogen-activated protein kinase kinase kinase 17 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76376contigH-elongata_contig76376:421..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.529134-CDS-H-elongata_contig76376:420..5731622931168.529134-CDS-H-elongata_contig76376:420..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76376 421..573 -
1691679726.3869798-CDS-H-elongata_contig76376:420..5731691679726.3869798-CDS-H-elongata_contig76376:420..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76376 421..573 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.5412385-UTR-H-elongata_contig76376:573..5761622931168.5412385-UTR-H-elongata_contig76376:573..576Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76376 574..576 -
1691679726.3972123-UTR-H-elongata_contig76376:573..5761691679726.3972123-UTR-H-elongata_contig76376:573..576Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76376 574..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76376.15313.1prot_H-elongata_contig76376.15313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76376 421..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76376.15313.1

>prot_H-elongata_contig76376.15313.1 ID=prot_H-elongata_contig76376.15313.1|Name=mRNA_H-elongata_contig76376.15313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MVDVCQRVAHVHDHGFVHSDIKFENILLYEEAYNRYTAKLSDFGLAYGEG
T
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mRNA from alignment at H-elongata_contig76376:421..576-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76376.15313.1 ID=mRNA_H-elongata_contig76376.15313.1|Name=mRNA_H-elongata_contig76376.15313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig76376:421..576- (Himanthalia elongata Himel1 dioecious)
CTCATGGTCGACGTCTGCCAACGCGTCGCCCATGTGCACGACCACGGATT CGTGCACTCGGACATTAAGTTCGAAAACATTCTGCTTTACGAAGAAGCGT ACAACAGATACACCGCCAAGCTTTCCGACTTCGGCTTGGCCTACGGTGAG GGTACC
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Coding sequence (CDS) from alignment at H-elongata_contig76376:421..576-

>mRNA_H-elongata_contig76376.15313.1 ID=mRNA_H-elongata_contig76376.15313.1|Name=mRNA_H-elongata_contig76376.15313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig76376:421..576- (Himanthalia elongata Himel1 dioecious)
ATGGTCGACGTCTGCCAACGCGTCGCCCATGTGCACGACCACGGATTCGT
GCACTCGGACATTAAGTTCGAAAACATTCTGCTTTACGAAGAAGCGTACA
ACAGATACACCGCCAAGCTTTCCGACTTCGGCTTGGCCTACGGTGAGGGT
ACCATGGTCGACGTCTGCCAACGCGTCGCCCATGTGCACGACCACGGATT
CGTGCACTCGGACATTAAGTTCGAAAACATTCTGCTTTACGAAGAAGCGT
ACAACAGATACACCGCCAAGCTTTCCGACTTCGGCTTGGCCTACGGTGAG
GGTACC
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