mRNA_H-elongata_contig76304.15309.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.170e-25 Identity = 48/62 (77.42%), Postives = 58/62 (93.55%), Query Frame = 1
Query: 13 VDEQWYTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
VDE++YTSSRVRSI PV+FL GRIE++I +PAGLGLWAAFWMLP+++SRG WAA+GEIDIME
Sbjct: 86 VDERFYTSSRVRSIPPVAFLTGRIESRIQVPAGLGLWAAFWMLPSDTSRGGWAATGEIDIME 147
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A1M5YU54_9GAMM (Beta-glucanase, GH16 family n=2 Tax=Ferrimonas marina TaxID=299255 RepID=A0A1M5YU54_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 4.230e-18 Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
YTS R+RS++ F GRIEA+I LPAG GLW AFWMLP + G WAASGEIDIME
Sbjct: 101 YTSGRIRSLNKADFRYGRIEARIKLPAGQGLWPAFWMLPTDEQYGGWAASGEIDIME 157
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A1Y0GY39_9BACT (GH16 domain-containing protein n=1 Tax=Armatimonadetes bacterium Uphvl-Ar1 TaxID=2004467 RepID=A0A1Y0GY39_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 6.570e-17 Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIMEV 201
+TS+R+R+++ F GRIEA+I +PAG GLW AFWMLP+NS G WA+SGEIDIME+
Sbjct: 260 FTSARLRTLNKYEFRYGRIEARIQVPAGQGLWPAFWMLPSNSPYGTWASSGEIDIMEM 317
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: UPI0019B0D815 (family 16 glycosylhydrolase n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B0D815) HSP 1 Score: 82.0 bits (201), Expect = 1.000e-16 Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
YTS R+RSI F GRIEA++ LPAG G+W AFWMLP + + G WAASGEIDIME
Sbjct: 94 YTSGRIRSIFKGDFTYGRIEARMKLPAGQGIWPAFWMLPTDEAYGGWAASGEIDIME 150
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: UPI001C992DE8 (glycoside hydrolase family 16 protein n=1 Tax=Ferrimonas balearica TaxID=44012 RepID=UPI001C992DE8) HSP 1 Score: 80.1 bits (196), Expect = 1.950e-16 Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
Y+S R+RS+ F GRIEA+I LPAG GLW AFWMLP+ G WAASGEIDIME
Sbjct: 92 YSSGRIRSLHNGDFRYGRIEARIQLPAGQGLWPAFWMLPSEEVYGGWAASGEIDIME 148
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A0Q6LQI7_9BURK (Uncharacterized protein n=3 Tax=unclassified Rhizobacter TaxID=2640088 RepID=A0A0Q6LQI7_9BURK) HSP 1 Score: 80.9 bits (198), Expect = 3.610e-16 Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
YTS+R+R+++ +L GR+EA+I LP G GLW AFWMLP++S G WAASGEIDIME
Sbjct: 437 YTSARLRTLNKGDWLYGRMEARIKLPGGQGLWPAFWMLPSDSVYGGWAASGEIDIME 493
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: UPI001E346656 (glycoside hydrolase family 16 protein n=1 Tax=Treponema zuelzerae TaxID=156 RepID=UPI001E346656) HSP 1 Score: 79.3 bits (194), Expect = 5.430e-16 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIMEV 201
+TS+R+RS V L G+IEA+I P G GLW+AFWMLP +++ G WAASGEIDIME+
Sbjct: 123 FTSARIRSKDKVDVLYGKIEARIKFPGGNGLWSAFWMLPTDNAYGAWAASGEIDIMEM 180
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A357KVT8_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A357KVT8_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 6.430e-16 Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
YTS+R+R+ L GRIEA+I +P+G G+W AFWMLP S G WAASGEIDIME
Sbjct: 86 YTSARIRTAGKFEVLYGRIEARITIPSGTGIWPAFWMLPTASPYGSWAASGEIDIME 142
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A5M4D5X1_9CYAN (Glycosyl hydrolase family protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D5X1_9CYAN) HSP 1 Score: 80.1 bits (196), Expect = 6.440e-16 Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
Y+S+R+R+ F GR+EA+I +P G GLWAAFWMLP NS G+WAASGEIDI+E
Sbjct: 92 YSSARLRTQGAFEFRYGRVEARIKVPKGQGLWAAFWMLPTNSPYGEWAASGEIDIIE 148
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0YDK3_9GAMM (Beta-glucanase/Beta-glucan synthetase n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0YDK3_9GAMM) HSP 1 Score: 77.8 bits (190), Expect = 2.240e-15 Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
YTS+R+ + +F GRIEA+I LPAG GLW AFW+LP + + G WAASGEID+ME
Sbjct: 138 YTSARINTRDRFAFRYGRIEARIRLPAGQGLWPAFWLLPQDDAYGTWAASGEIDVME 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76304.15309.1 >prot_H-elongata_contig76304.15309.1 ID=prot_H-elongata_contig76304.15309.1|Name=mRNA_H-elongata_contig76304.15309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp EEVEVDEQWYTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANback to top mRNA from alignment at H-elongata_contig76304:1924..2139+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76304.15309.1 ID=mRNA_H-elongata_contig76304.15309.1|Name=mRNA_H-elongata_contig76304.15309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig76304:1924..2139+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76304:1924..2139+ >mRNA_H-elongata_contig76304.15309.1 ID=mRNA_H-elongata_contig76304.15309.1|Name=mRNA_H-elongata_contig76304.15309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig76304:1924..2139+ (Himanthalia elongata Himel1 dioecious)back to top |