mRNA_H-elongata_contig76297.15307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76297.15307.1
Unique NamemRNA_H-elongata_contig76297.15307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: A0A6H5JY30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY30_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.050e-40
Identity = 74/143 (51.75%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  160 DVVASPSLVESTRE---PLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            D+V S +    T E   PL F ALNFY  RDG+P   YPWL+D K+IEPH ET+++V++PRDG+ Y WEV +G + +  V  SA G   +  LT LD+NVITL+EV+ +G++ R+L+E VMVKYVRREIR+LT+ ++ EL  A
Sbjct:   42 DIVTSSAETTGTVEEVAPLSFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTMSVSSPRDGYDYIWEVRSGDTDNTKVRASARGAVVLITLTILDDNVITLKEVNSDGEIMRQLDELVMVKYVRREIRTLTDNEREELFHA 184          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.110e-39
Identity = 90/206 (43.69%), Postives = 123/206 (59.71%), Query Frame = 1
Query:   22 RWIGLAVVAGLVLATMMAIASDG----------DKPRG---FQAETVSLAEITSEVRATDVVASPSL------VESTREPLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEE-GKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            RW+  AVV  L +  M+A+A  G          +  R     +A  ++ +  +  V+A D  A+  +      V +   PL F A NFY  RDG+P + YPWLK+ K+IEPH ET+ TV++PRDGF YRW V    +  D +   A G  TV +LT LD+ +I LEEV+ E G V+RRLEE VMVKYVRRE+R+LT+E++ EL DA
Sbjct:   49 RWLSFAVVGTLAVGVMVALAQAGYHLPSATTTLETARTESMIEASGIARSSGSGSVKANDTPAAVKVHHSRPGVATELAPLSFEATNFYHIRDGKPALDYPWLKEVKLIEPHRETTFTVSSPRDGFEYRWTVRGADADKDDLRAEASGAETVMILTVLDDTIIDLEEVNTETGVVARRLEEKVMVKYVRRELRTLTDEEREELFDA 254          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 3.290e-38
Identity = 83/139 (59.71%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  199 EPLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVH-----------AGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVD-EEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            + L FTALNFY  RDG+PG  YPWLKDFK++EPH ET+L V  PR+GF YRW+V            +GG SS I    A G     VLT L+EN+ITLEEV+  +GKV RRLEETVMVKYVRREIRSLT++++ ELLDA
Sbjct:  110 QALAFTALNFYHVRDGKPGQDYPWLKDFKLVEPHRETTLAVEAPREGFEYRWDVRPTCTGDSCTSSSGGESSPI---QAAGAVAEVVLTSLEENMITLEEVNVADGKVVRRLEETVMVKYVRREIRSLTDDEREELLDA 245          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 9.620e-38
Identity = 72/126 (57.14%), Postives = 95/126 (75.40%), Query Frame = 1
Query:  202 PLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            PL F ALNFY  RDG+P   YPWL+D K+IEPH ET+LTV++PRDG+ Y WEV +G +    V  SA G   +  LT LD+NVITL+EV+ +G++ R+L+E VMVKYVRREIR+LT++++ EL DA
Sbjct:  126 PLAFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTLTVSSPRDGYDYIWEVRSGDTDDTEVRASARGAEALITLTILDDNVITLKEVNSDGEIMRQLDELVMVKYVRREIRTLTDDEREELFDA 251          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.720e-37
Identity = 73/125 (58.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  205 LYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            L F A NFYQ RDG+P   YPWLKD K+IEPH ET+ TV++PRDGF YRW V AG ++   +   A G  +  VLT LDEN + LEEVD +G V RR +E VMVKYVRREIR+LT++++ EL DA
Sbjct:  166 LSFEATNFYQLRDGKPAQDYPWLKDVKLIEPHRETTFTVSSPRDGFDYRWRVFAGSAAEGELCTEATGPESTVVLTTLDENEVVLEEVDADGTVVRRRQEKVMVKYVRREIRTLTDDEREELFDA 290          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.760e-37
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 1
Query:  202 PLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            PL F ALNFY  RDG+P   YPWLK  K+IEPH ET+L+V++PRDG  Y WEV AG +    ++ +A G   V  LT LD+NVIT++EV  +G + RRL+E VMVKYVRREIR+LT+E++ ELLDA
Sbjct:  120 PLSFQALNFYHIRDGKPAQDYPWLKGVKLIEPHRETTLSVSSPRDGHDYIWEVRAGETDEANLVATARGAEAVVTLTTLDDNVITVKEVHPDGHIVRRLDEVVMVKYVRREIRTLTDEEREELLDA 245          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 6.320e-36
Identity = 70/126 (55.56%), Postives = 95/126 (75.40%), Query Frame = 1
Query:  202 PLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            PL F ALNFY  RDG+P   Y WL+D K+IEPH ET+L V++PRDG+ Y WEVHAG +    ++ +A G   V  LT LD+++IT++EV  +G++ R+L+E VMVKYVRREIR+LT+E++ ELLDA
Sbjct:   92 PLSFEALNFYHIRDGKPAQDYTWLRDVKLIEPHRETTLLVSSPRDGYDYIWEVHAGETDEGDLIATASGAEAVVTLTVLDDSMITVKEVLPDGEIVRQLDEMVMVKYVRREIRTLTDEERVELLDA 217          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.410e-34
Identity = 76/138 (55.07%), Postives = 97/138 (70.29%), Query Frame = 1
Query:  175 PSLVESTREPLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTK--LDENVITLEEVD-EEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            P L  +   PL F A NFY  RDG+P   YPWL+D K++EPH ET+L+V +PR+GF YRW +  GGSS+  V  +A G   V VL    L+EN++TLEEV+   G V+RRL+E VMVKYVRREIR+LT E++ ELLDA
Sbjct:   96 PGLATTAPPPLAFHARNFYHVRDGKPASDYPWLRDVKLVEPHRETTLSVDDPREGFEYRWLIR-GGSSASKVHTAASGAEAVVVLEAKHLEENLVTLEEVEIATGAVARRLDEFVMVKYVRREIRTLTYEEREELLDA 232          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.070e-33
Identity = 75/143 (52.45%), Postives = 93/143 (65.03%), Query Frame = 1
Query:  202 PLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSS----------------DIVLVSAMGVSTVAVLTKLDENVITLEEVDEE-GKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            PL FTALNFY  RDG+P   YPWLKD K+IEPH ET+L V  PRDGF YRW+V  G   S                + V+ +A G   V V T L EN ++LEEV+ + G V+RRL+E VMVKYVRREIR+LT++++ EL DA
Sbjct:  132 PLSFTALNFYHVRDGKPAQDYPWLKDVKLIEPHRETTLDVETPRDGFEYRWKVLLGAPVSITDSAPASSFEEEGVTEEVVATASGAEAVVVFTHLGENSVSLEEVNSDTGVVTRRLQEKVMVKYVRREIRTLTDDEREELFDA 274          
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.430e-28
Identity = 60/106 (56.60%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  262 YPWLKDFKVIEPHHETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVITLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA 579
            YPWL+D K+IEPH ET L V++PRDG+ Y WEV AG +    ++ +A G   V  LT LDEN+IT++EV  +G++ R+L+E VMVKYVRREIR+LT+E++ ELLDA
Sbjct:  110 YPWLRDVKLIEPHRETILAVSSPRDGYDYIWEVRAGETDEADLIATASGAEAVVTLTVLDENMITVKEVHPDGEIVRQLDEMVMVKYVRREIRTLTDEERVELLDA 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76297.15307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JY30_9PHAE4.050e-4051.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7R8_9PHAE3.110e-3943.69TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC28_ECTSI3.290e-3859.71TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5JRR4_9PHAE9.620e-3857.14TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LC46_ECTSI2.720e-3758.40Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A6H5K485_9PHAE3.760e-3757.94TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FW00_ECTSI6.320e-3655.56Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A6H5J676_9PHAE3.410e-3455.07TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LC42_ECTSI3.070e-3352.45TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D7G9A4_ECTSI1.430e-2856.60Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76297contigH-elongata_contig76297:1255..1833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size579
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.6463926-UTR-H-elongata_contig76297:1254..12571622931167.6463926-UTR-H-elongata_contig76297:1254..1257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76297 1255..1257 +
1691679726.034934-UTR-H-elongata_contig76297:1254..12571691679726.034934-UTR-H-elongata_contig76297:1254..1257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76297 1255..1257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.6593428-CDS-H-elongata_contig76297:1257..18331622931167.6593428-CDS-H-elongata_contig76297:1257..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76297 1258..1833 +
1691679726.0444887-CDS-H-elongata_contig76297:1257..18331691679726.0444887-CDS-H-elongata_contig76297:1257..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76297 1258..1833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76297.15307.1prot_H-elongata_contig76297.15307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76297 1258..1833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76297.15307.1

>prot_H-elongata_contig76297.15307.1 ID=prot_H-elongata_contig76297.15307.1|Name=mRNA_H-elongata_contig76297.15307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MRGGIVRWIGLAVVAGLVLATMMAIASDGDKPRGFQAETVSLAEITSEVR
ATDVVASPSLVESTREPLYFTALNFYQARDGRPGVAYPWLKDFKVIEPHH
ETSLTVTNPRDGFGYRWEVHAGGSSSDIVLVSAMGVSTVAVLTKLDENVI
TLEEVDEEGKVSRRLEETVMVKYVRREIRSLTEEDQNELLDA
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mRNA from alignment at H-elongata_contig76297:1255..1833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76297.15307.1 ID=mRNA_H-elongata_contig76297.15307.1|Name=mRNA_H-elongata_contig76297.15307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig76297:1255..1833+ (Himanthalia elongata Himel1 dioecious)
CTCATGAGAGGTGGTATCGTACGATGGATTGGGCTAGCAGTCGTGGCTGG ATTGGTACTCGCAACCATGATGGCCATCGCAAGTGATGGAGATAAACCAC GTGGCTTTCAAGCGGAAACTGTAAGCCTCGCAGAGATCACCAGCGAGGTA AGGGCAACAGACGTGGTAGCTTCGCCGTCATTGGTTGAGTCGACTCGAGA ACCCTTGTACTTCACAGCGCTCAACTTTTATCAAGCCCGGGATGGGAGGC CCGGTGTGGCCTACCCCTGGTTGAAGGACTTCAAGGTCATCGAGCCCCAC CACGAGACATCCCTGACGGTAACTAACCCACGTGACGGGTTCGGGTATCG ATGGGAGGTTCACGCAGGAGGTTCAAGCAGCGACATTGTCCTTGTTTCTG CGATGGGGGTAAGCACGGTTGCTGTCCTTACAAAGCTCGACGAGAACGTG ATCACACTAGAGGAGGTGGATGAGGAGGGGAAGGTGTCCCGTCGCCTGGA AGAGACTGTTATGGTCAAGTATGTACGCAGGGAGATCAGGTCGCTTACGG AAGAAGATCAAAATGAGCTGCTCGATGCG
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Coding sequence (CDS) from alignment at H-elongata_contig76297:1255..1833+

>mRNA_H-elongata_contig76297.15307.1 ID=mRNA_H-elongata_contig76297.15307.1|Name=mRNA_H-elongata_contig76297.15307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig76297:1255..1833+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGGTGGTATCGTACGATGGATTGGGCTAGCAGTCGTGGCTGGATT
GGTACTCGCAACCATGATGGCCATCGCAAGTGATGGAGATAAACCACGTG
GCTTTCAAGCGGAAACTGTAAGCCTCGCAGAGATCACCAGCGAGGTAAGG
GCAACAGACGTGGTAGCTTCGCCGTCATTGGTTGAGTCGACTCGAGAACC
CTTGTACTTCACAGCGCTCAACTTTTATCAAGCCCGGGATGGGAGGCCCG
GTGTGGCCTACCCCTGGTTGAAGGACTTCAAGGTCATCGAGCCCCACCAC
GAGACATCCCTGACGGTAACTAACCCACGTGACGGGTTCGGGTATCGATG
GGAGGTTCACGCAGGAGGTTCAAGCAGCGACATTGTCCTTGTTTCTGCGA
TGGGGGTAAGCACGGTTGCTGTCCTTACAAAGCTCGACGAGAACGTGATC
ACACTAGAGGAGGTGGATGAGGAGGGGAAGGTGTCCCGTCGCCTGGAAGA
GACTGTTATGGTCAAGTATGTACGCAGGGAGATCAGGTCGCTTACGGAAG
AAGATCAAAATGAGCTGCTCGATGCGATGAGAGGTGGTATCGTACGATGG
ATTGGGCTAGCAGTCGTGGCTGGATTGGTACTCGCAACCATGATGGCCAT
CGCAAGTGATGGAGATAAACCACGTGGCTTTCAAGCGGAAACTGTAAGCC
TCGCAGAGATCACCAGCGAGGTAAGGGCAACAGACGTGGTAGCTTCGCCG
TCATTGGTTGAGTCGACTCGAGAACCCTTGTACTTCACAGCGCTCAACTT
TTATCAAGCCCGGGATGGGAGGCCCGGTGTGGCCTACCCCTGGTTGAAGG
ACTTCAAGGTCATCGAGCCCCACCACGAGACATCCCTGACGGTAACTAAC
CCACGTGACGGGTTCGGGTATCGATGGGAGGTTCACGCAGGAGGTTCAAG
CAGCGACATTGTCCTTGTTTCTGCGATGGGGGTAAGCACGGTTGCTGTCC
TTACAAAGCTCGACGAGAACGTGATCACACTAGAGGAGGTGGATGAGGAG
GGGAAGGTGTCCCGTCGCCTGGAAGAGACTGTTATGGTCAAGTATGTACG
CAGGGAGATCAGGTCGCTTACGGAAGAAGATCAAAATGAGCTGCTCGATG
CG
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