mRNA_H-elongata_contig76217.15299.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76217.15299.1
Unique NamemRNA_H-elongata_contig76217.15299.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Match: UPI00138FC94C (uncharacterized protein LOC116617085 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC94C)

HSP 1 Score: 119 bits (298), Expect = 9.990e-31
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 1 
Query:    1 ATMYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVEWGTEYLGLDGVDA-NAPVIGSTTMHIAQPARYMAIEVKAAVQKWFFDSPGANNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTC 423
            A MY+YF Y HK S HS    P++  +  +H +++ W+E +A  +YR+S   W   YLGLDG DA N P   STTM   +P+ ++  +V  AV+ W   SP   N GL+++V+DE + GR LRF SNA  DS +HAFI + C
Sbjct:   88 AKMYMYFVYAHKASWHSPHQAPYLNRDIMIHRVLKPWNEGQANTRYRMSNYPWSQLYLGLDGTDAENMPQSPSTTMFSYRPSGFVEFDVTRAVKDWAGGSP---NYGLVVRVKDESVDGRGLRFASNADPDSQHHAFIHVKC 226
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BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Match: A0A451CPM4_9GAMM (Disaggregatase related repeat-containing protein n=1 Tax=Candidatus Kentron sp. G TaxID=2126341 RepID=A0A451CPM4_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.920e-29
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 1 
Query:    1 ATMYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVEWGTEYLGLDGVDANAPVIGSTTM-HIAQPARYMAIEVKAAVQKWFFDSPGANNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTC 423
            A MY+YF Y HK S HS++ +P +     +  +++ W+E EAT   R+SG  W  EYLGLD +DA A   G  T  H  +P+ YM  +V  AV+ W   + G  N GLL+   +E  +GRD+RFYS  YSD+D H  + + C
Sbjct:   41 AKMYLYFSYAHKASWHSVEESPNISRPLAVQRVLKKWEETEATSTQRMSGKSWRQEYLGLDNIDAEATPQGIPTYYHSHRPSGYMEFDVTPAVKNW---AEGERNYGLLVWAMNEYEVGRDIRFYSREYSDTDKHPVLKVLC 179
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BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Match: UPI00138FC51C (uncharacterized protein LOC116617081 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC51C)

HSP 1 Score: 112 bits (281), Expect = 3.340e-28
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1 
Query:    1 ATMYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVEWGTEYLGLDGVDANA-PVIGSTTMHIAQPARYMAIEVKAAVQKWFFDSPGANNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTC 423
            A MY+YF Y HK S HS   TP++  +  +H +++ W+E +A   YRLS + W   YLGL+ +DA A P   STTM   +P+ ++  +V  AV+ W   SP   N G++++V++E + GR LRF SNA  DS  HA+I + C
Sbjct:   86 AKMYMYFVYAHKASWHSHQLTPYLNRDIMIHRVLKPWNERQANSGYRLSRIRWSQMYLGLNNIDAEARPQSPSTTMFSFRPSGFVEFDVTRAVRDWARGSP---NYGVVVRVQNESVEGRGLRFASNADRDSKRHAYIHVKC 224
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BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Match: UPI001CF4890C (uncharacterized protein LOC114956055 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4890C)

HSP 1 Score: 105 bits (263), Expect = 1.780e-25
Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 1 
Query:    1 ATMYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVEWGTEYLGLDGVDANA-PVIGSTTMHIAQPARYMAIEVKAAVQKWFFDSPGANNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTCT 426
            A MY+Y+ Y HK S HS+  TP++    ++ ++ + W E +AT  YR  G  W +++L LDG DA A P  G  T+   +P  ++  ++  AV+ W   +P   N GLLI+  +E   GRD+RF SN YSD   HAF+ + C+
Sbjct:   90 AKMYLYYVYAHKASWHSIKTTPFIPRYLEVRLVKKYWREAQATSLYRYRGSRWSSQWLSLDGRDAEASPQRGMVTIFPVRPRGFVEFDITDAVKSWRSGTP---NYGLLIRATNELARGRDIRFASNRYSDKSKHAFVKVLCS 229
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BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Match: UPI0009E28283 (uncharacterized protein LOC110056526 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E28283)

HSP 1 Score: 105 bits (262), Expect = 4.080e-25
Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:    1 ATMYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVEWGTEYLGLDGVDANAPVI--GSTTMHIAQPARYMAIEVKAAVQKWFFDSPGANNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTC 423
            A MY+Y++Y HK S HS+  TP++    Q H++ + W E +AT   R S V W   +L LDG DA A        T++  +P  ++  +V +A++KW     G  N GL+I+  +E   GR +RFYSN YSDS  HA++ + C
Sbjct:  112 AKMYLYYKYAHKASWHSIYRTPFIPRYIQAHLVKKYWVESQATSTKRYSSVSWSAPWLALDGSDAEAEPQDWNPVTIYPLRPEGFVEFDVTSAIRKW---RGGVPNYGLVIRAVNELQAGRGIRFYSNRYSDSSKHAYVRVLC 251
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BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Match: UPI001CF180F3 (LOW QUALITY PROTEIN: uncharacterized protein LOC114956031 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF180F3)

HSP 1 Score: 104 bits (260), Expect = 2.830e-23
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:    1 ATMYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVEWGTEYLGLDGVDANA-PVIGSTTMHIAQPARYMAIEVKAAVQKWFFDSPGANNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTCT 426
            A MY+Y+ Y HK S  S+   P++    ++ ++ + W E EAT +YR     W +++L LDG DA A P  G  T+   +P  ++ +++  AV+ W   +P   N GLLI+  +E   GRD+RF SN YSD   HAF+ + CT
Sbjct:  297 AKMYLYYLYAHKASWQSIKTAPFIPRYLEVRLVKKYWKEREATTRYRYGRYRWSSQWLSLDGRDAEASPQRGKVTIFPTRPRGFVELDITDAVKSWRSGTP---NYGLLIRATNELARGRDIRFASNRYSDKSKHAFVKVLCT 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76217.15299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00138FC94C9.990e-3143.66uncharacterized protein LOC116617085 n=1 Tax=Nemat... [more]
A0A451CPM4_9GAMM1.920e-2941.55Disaggregatase related repeat-containing protein n... [more]
UPI00138FC51C3.340e-2841.55uncharacterized protein LOC116617081 n=1 Tax=Nemat... [more]
UPI001CF4890C1.780e-2538.46uncharacterized protein LOC114956055 n=1 Tax=Acrop... [more]
UPI0009E282834.080e-2538.46uncharacterized protein LOC110056526 isoform X1 n=... [more]
UPI001CF180F32.830e-2337.76LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76217contigH-elongata_contig76217:1940..2838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76217.15299.1prot_H-elongata_contig76217.15299.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76217 1946..2838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.8045263-UTR-H-elongata_contig76217:1939..19451622931166.8045263-UTR-H-elongata_contig76217:1939..1945Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76217 1940..1945 +
1691679725.6785676-UTR-H-elongata_contig76217:1939..19451691679725.6785676-UTR-H-elongata_contig76217:1939..1945Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76217 1940..1945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.821291-CDS-H-elongata_contig76217:1945..22001622931166.821291-CDS-H-elongata_contig76217:1945..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76217 1946..2200 +
1691679725.6875334-CDS-H-elongata_contig76217:1945..22001691679725.6875334-CDS-H-elongata_contig76217:1945..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76217 1946..2200 +
1622931166.8420854-CDS-H-elongata_contig76217:2658..28381622931166.8420854-CDS-H-elongata_contig76217:2658..2838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76217 2659..2838 +
1691679725.6982238-CDS-H-elongata_contig76217:2658..28381691679725.6982238-CDS-H-elongata_contig76217:2658..2838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76217 2659..2838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76217.15299.1

>prot_H-elongata_contig76217.15299.1 ID=prot_H-elongata_contig76217.15299.1|Name=mRNA_H-elongata_contig76217.15299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MYIYFRYGHKPSSHSLDYTPWVKHEAQLHMIVQSWDEDEATIQYRLSGVE
WGTEYLGLDGVDANAPVIGSTTMHIAQPARYMAIEVKAAVQKWFFDSPGA
NNNGLLIKVEDEDLIGRDLRFYSNAYSDSDYHAFISLTCTSSTQ*
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mRNA from alignment at H-elongata_contig76217:1940..2838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76217.15299.1 ID=mRNA_H-elongata_contig76217.15299.1|Name=mRNA_H-elongata_contig76217.15299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=899bp|location=Sequence derived from alignment at H-elongata_contig76217:1940..2838+ (Himanthalia elongata Himel1 dioecious)
GCCACGATGTATATTTACTTCAGGTATGGCCACAAACCCAGCTCGCACAG
CCTAGACTACACCCCGTGGGTGAAGCATGAGGCTCAGCTACACATGATTG
TTCAGTCCTGGGATGAGGATGAAGCTACCATTCAGTACAGGCTAAGCGGG
GTGGAGTGGGGTACAGAGTATCTCGGGCTAGACGGCGTCGACGCCAACGC
CCCTGTCATCGGCAGCACCACCATGCATATCGCGCAGCCTGCGCGCTACA
TGGCGATCGAGGTGTGACTAATCTTCTTGCCAGTATGGGTAATGTCGGGC
TACGGACAATAATATGCCTGGCTAAATCGGCATACACTTTTACAACTCAC
ACCAGCTGCTGACCCCTACATCCGTGCCCCCCTGCGTTTCTGCCGATGAA
TGATGGCTGACTTTGATCTGTGTATCGTGTATTACCCACTGACGTCTCCG
AAAGTGTTCCAGGGAAAAATTCACGATTGCGACAGTGGTTGCATTATCAT
TAAAGTGATCGTTATCGCTTTTGTTCTGTTACAAAATTATTATGTGCATT
CGCATTCACTCCGTCGAAATTGGCTTTCAGTCGATGATTTCTAGATCTCA
TGGCGAACTATCGACAATATTAGTTGATTAATAAATAACTAATAGCAGTG
TAAAAAATATCGAAGCGAGAAGAATCTTATGATAGGACACCGGCTGTTCG
CATATGGCTGAATACCTAGGTCAAAGCTGCTGTCCAGAAGTGGTTTTTCG
ACAGCCCAGGAGCGAACAATAACGGCCTTCTTATCAAGGTTGAAGATGAA
GATCTCATCGGGCGCGACCTTCGCTTCTACTCAAATGCCTACTCGGATTC
GGATTACCACGCCTTCATCAGCCTCACATGTACAAGCAGCACCCAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig76217:1940..2838+

>mRNA_H-elongata_contig76217.15299.1 ID=mRNA_H-elongata_contig76217.15299.1|Name=mRNA_H-elongata_contig76217.15299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig76217:1940..2838+ (Himanthalia elongata Himel1 dioecious)
ATGTATATTTACTTCAGGTATGGCCACAAACCCAGCTCGCACAGCCTAGA
CTACACCCCGTGGGTGAAGCATGAGGCTCAGCTACACATGATTGTTCAGT
CCTGGGATGAGGATGAAGCTACCATTCAGTACAGGCTAAGCGGGGTGGAG
TGGGGTACAGAGTATCTCGGGCTAGACGGCGTCGACGCCAACGCCCCTGT
CATCGGCAGCACCACCATGCATATCGCGCAGCCTGCGCGCTACATGGCGA
TCGAGATGTATATTTACTTCAGGTATGGCCACAAACCCAGCTCGCACAGC
CTAGACTACACCCCGTGGGTGAAGCATGAGGCTCAGCTACACATGATTGT
TCAGTCCTGGGATGAGGATGAAGCTACCATTCAGTACAGGCTAAGCGGGG
TGGAGTGGGGTACAGAGTATCTCGGGCTAGACGGCGTCGACGCCAACGCC
CCTGTCATCGGCAGCACCACCATGCATATCGCGCAGCCTGCGCGCTACAT
GGCGATCGAGGTCAAAGCTGCTGTCCAGAAGTGGTTTTTCGACAGCCCAG
GAGCGAACAATAACGGCCTTCTTATCAAGGTTGAAGATGAAGATCTCATC
GGGCGCGACCTTCGCTTCTACTCAAATGCCTACTCGGATTCGGATTACCA
CGCCTTCATCAGCCTCACATGTACAAGCAGCACCCAATAAGTCAAAGCTG
CTGTCCAGAAGTGGTTTTTCGACAGCCCAGGAGCGAACAATAACGGCCTT
CTTATCAAGGTTGAAGATGAAGATCTCATCGGGCGCGACCTTCGCTTCTA
CTCAAATGCCTACTCGGATTCGGATTACCACGCCTTCATCAGCCTCACAT
GTACAAGCAGCACCCAATAA
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