mRNA_H-elongata_contig7619.15298.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7619.15298.1
Unique NamemRNA_H-elongata_contig7619.15298.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: D7FNX7_ECTSI (TatD DNase domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.560e-17
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            AV+AAK+GYFFSVPPI+CRS GFQ LVKA+PLESL+LETDSPAL  +K +
Sbjct:  177 AVQAAKAGYFFSVPPIVCRSPGFQSLVKALPLESLVLETDSPALGPEKGV 226
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: A0A6H5KIS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.170e-17
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            AV+AAK+GYFFSVPPI+CRS GFQ LVKA+PLESL+LETDSPAL  +K +
Sbjct:  250 AVQAAKAGYFFSVPPIVCRSSGFQSLVKALPLESLVLETDSPALGPEKGV 299
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: UPI001E1D738D (putative deoxyribonuclease TATDN3 isoform X1 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D738D)

HSP 1 Score: 67.8 bits (164), Expect = 4.770e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDK 144
            A+E  K GYFFS+PP I RSE  QKLVKA+P+ESLLLETDSPAL   K
Sbjct:  204 AMEGVKEGYFFSIPPSIIRSEQKQKLVKALPVESLLLETDSPALGPQK 251
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: V8P7Z5_OPHHA (Putative deoxyribonuclease TATDN3 (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8P7Z5_OPHHA)

HSP 1 Score: 66.2 bits (160), Expect = 5.590e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLES+ LETDSPAL  +K +
Sbjct:   99 AMEGVKAGYFFSIPPSIARSEQKQKLVKQLPLESICLETDSPALGPEKQV 148
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: A0A8D2IIQ9_VARKO (TatD DNase domain containing 3 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2IIQ9_VARKO)

HSP 1 Score: 66.6 bits (161), Expect = 6.030e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLESL LETDSPAL  +K +
Sbjct:  127 AMEGVKAGYFFSIPPSIIRSEQKQKLVKQLPLESLCLETDSPALGPEKQV 176
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: A0A091W227_OPIHO (Putative deoxyribonuclease TATDN3 (Fragment) n=2 Tax=Opisthocomus hoazin TaxID=30419 RepID=A0A091W227_OPIHO)

HSP 1 Score: 65.9 bits (159), Expect = 7.240e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLES+ LETDSPAL  +K +
Sbjct:   94 AMEGVKAGYFFSIPPSIIRSEQKQKLVKLLPLESMCLETDSPALGPEKQV 143
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BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: A0A670Z4U2_PSETE (TatD DNase domain containing 3 n=3 Tax=Elapidae TaxID=8602 RepID=A0A670Z4U2_PSETE)

HSP 1 Score: 66.2 bits (160), Expect = 8.110e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLES+ LETDSPAL  +K +
Sbjct:  124 AMEGVKAGYFFSIPPSIARSEQKQKLVKQLPLESICLETDSPALGPEKQV 173
[Close]
BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: UPI001CF7848E (putative deoxyribonuclease TATDN3 isoform X1 n=3 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7848E)

HSP 1 Score: 66.6 bits (161), Expect = 1.010e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLESL LETDSPAL  +K +
Sbjct:  174 AMEGVKAGYFFSIPPSIIRSEQKQKLVKQLPLESLCLETDSPALGPEKQV 223
[Close]
BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: A0A7L0K1L0_CHATO (YNF8 Deoxyribonuclease (Fragment) n=8 Tax=Neognathae TaxID=8825 RepID=A0A7L0K1L0_CHATO)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLES+ LETDSPAL  +K +
Sbjct:  122 AMEGVKAGYFFSIPPSIIRSEQKQKLVKLLPLESICLETDSPALGPEKQV 171
[Close]
BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Match: A0A091Q658_LEPDC (Putative deoxyribonuclease TATDN3 (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A091Q658_LEPDC)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL 150
            A+E  K+GYFFS+PP I RSE  QKLVK +PLES+ LETDSPAL  +K +
Sbjct:  122 AMEGVKAGYFFSIPPSIIRSEQKQKLVKLLPLESMCLETDSPALGPEKQV 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7619.15298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNX7_ECTSI4.560e-1776.00TatD DNase domain containing 3 n=1 Tax=Ectocarpus ... [more]
A0A6H5KIS3_9PHAE7.170e-1776.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E1D738D4.770e-1270.83putative deoxyribonuclease TATDN3 isoform X1 n=3 T... [more]
V8P7Z5_OPHHA5.590e-1264.00Putative deoxyribonuclease TATDN3 (Fragment) n=1 T... [more]
A0A8D2IIQ9_VARKO6.030e-1266.00TatD DNase domain containing 3 n=1 Tax=Varanus kom... [more]
A0A091W227_OPIHO7.240e-1264.00Putative deoxyribonuclease TATDN3 (Fragment) n=2 T... [more]
A0A670Z4U2_PSETE8.110e-1264.00TatD DNase domain containing 3 n=3 Tax=Elapidae Ta... [more]
UPI001CF7848E1.010e-1166.00putative deoxyribonuclease TATDN3 isoform X1 n=3 T... [more]
A0A7L0K1L0_CHATO1.100e-1164.00YNF8 Deoxyribonuclease (Fragment) n=8 Tax=Neognath... [more]
A0A091Q658_LEPDC1.100e-1164.00Putative deoxyribonuclease TATDN3 (Fragment) n=6 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7619contigH-elongata_contig7619:151..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7FNX7
Preferred nameTATDN3
KEGG koko:K03424
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0084@1,KOG3020@2759
Ec32 ortholog descriptionTatD family
Ec32 orthologEc-10_004740.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.7488873-CDS-H-elongata_contig7619:150..3151622931166.7488873-CDS-H-elongata_contig7619:150..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7619 151..315 -
1691679725.6645966-CDS-H-elongata_contig7619:150..3151691679725.6645966-CDS-H-elongata_contig7619:150..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7619 151..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7619.15298.1prot_H-elongata_contig7619.15298.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7619 151..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7619.15298.1

>prot_H-elongata_contig7619.15298.1 ID=prot_H-elongata_contig7619.15298.1|Name=mRNA_H-elongata_contig7619.15298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
AVEAAKSGYFFSVPPIICRSEGFQKLVKAVPLESLLLETDSPALVSDKNL
CTRVG
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mRNA from alignment at H-elongata_contig7619:151..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7619.15298.1 ID=mRNA_H-elongata_contig7619.15298.1|Name=mRNA_H-elongata_contig7619.15298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig7619:151..315- (Himanthalia elongata Himel1 dioecious)
GCGGTGGAGGCAGCGAAATCGGGATATTTCTTCTCGGTTCCCCCCATCAT
CTGCCGCTCAGAAGGTTTCCAGAAGCTCGTGAAGGCGGTTCCGTTGGAGT
CGCTACTGCTAGAAACCGATTCGCCCGCGTTGGTGAGTGATAAAAATTTA
TGTACCCGTGTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig7619:151..315-

>mRNA_H-elongata_contig7619.15298.1 ID=mRNA_H-elongata_contig7619.15298.1|Name=mRNA_H-elongata_contig7619.15298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig7619:151..315- (Himanthalia elongata Himel1 dioecious)
GCGGTGGAGGCAGCGAAATCGGGATATTTCTTCTCGGTTCCCCCCATCAT
CTGCCGCTCAGAAGGTTTCCAGAAGCTCGTGAAGGCGGTTCCGTTGGAGT
CGCTACTGCTAGAAACCGATTCGCCCGCGTTGGTGAGTGATAAAAATTTA
TGTACCCGTGTTGGGGCGGTGGAGGCAGCGAAATCGGGATATTTCTTCTC
GGTTCCCCCCATCATCTGCCGCTCAGAAGGTTTCCAGAAGCTCGTGAAGG
CGGTTCCGTTGGAGTCGCTACTGCTAGAAACCGATTCGCCCGCGTTGGTG
AGTGATAAAAATTTATGTACCCGTGTTGGG
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