mRNA_H-elongata_contig76182.15297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76182.15297.1
Unique NamemRNA_H-elongata_contig76182.15297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76182.15297.1 vs. uniprot
Match: A0A6H5K6L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.210e-29
Identity = 128/326 (39.26%), Postives = 156/326 (47.85%), Query Frame = 3 
Query:   81 MPCQILVRRLADLVHSCTTRGGKRPLALDVLVGGVDHREGPTLHRVQATGAFQRYKAFAAGXXXXXXXARLAADTWATTPTTTARTA--EGMDREGSEDCPAVFGSDRSPSGDVEVGAGHDSTRENWQEESGGEGSDXXXXXXXARYANMIKXXXXXXXXXXXXXXXXXXXXXXXSLYRTRRRRLWTEAGGGEGEPPLTPEHREAFKRAFLSMWDPDVEDDDDGSSTPFTGVVEEGQEPKSRDA-TYGGLRASELSATVYGTR----VSSASNEFGWDEG-------AGLELDREDEKRYEGFECSTSEVEAILVELDEEQRDAKK 1016
            MPCQIL RRLADL+HSCTTRGGKRPLA+D+LVGGVD   G +LHRVQATGAFQRY+AFAAGXXXXXXX                     +G+ +   +  P         SG+   G   D+T  +    S GE          A  A    XXXXXXXXXX                             G+G   L PEHR A KRA  ++W+P                   G+E   R+A T GGLRA+EL+ATVYG +    V S   E G  E        AGL     +    +G  CS  E+E+IL+EL+ E     +
Sbjct:    1 MPCQILSRRLADLIHSCTTRGGKRPLAVDILVGGVDDHAGASLHRVQATGAFQRYRAFAAGXXXXXXXXXXXXXXXXXXDAREVXXXXXDGLRQASDDAVPGYL------SGETRQGVPVDATTTSADGASSGEDGGRGDAEDSATVAXXXXXXXXXXXXXX----------------------XXXXXXXGQGRGTLAPEHRAALKRAVAALWEP-AGGXXXXXXXXXXXXSAGGEERHGREAATRGGLRAAELTATVYGIQRQASVESPKEERGGGESLGDPVGDAGLGGGEGEGAWEQGVGCSREEMESILLELEAEDETTSR 297
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BLAST of mRNA_H-elongata_contig76182.15297.1 vs. uniprot
Match: D8LGQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-9
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 3 
Query:   81 MPCQILVRRLADLVHSCTTRGGKRPLALDVLVG 179
            MPC +L RRLADL+HSCTTRGGKRPLA+D+LVG
Sbjct:    1 MPCPMLSRRLADLIHSCTTRGGKRPLAVDILVG 33
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BLAST of mRNA_H-elongata_contig76182.15297.1 vs. uniprot
Match: I0YZR6_COCSC (Proteasome subunit alpha type n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YZR6_COCSC)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-6
Identity = 31/86 (36.05%), Postives = 47/86 (54.65%), Query Frame = 3 
Query:    6 RSDVQYLVECARAWCSEHRFVFGGPMPCQILVRRLADLVHSCTTRGGKRPLALDVLVGGVDHREGPTLHRVQATGAFQRYKAFAAG 263
            R+D + LV+ +R+  +E R  +G  +P   L  RLAD     T     RPLA+ +++ G+D   GP L +V   G +  YKA +AG
Sbjct:   84 RADARSLVQKSRSIAAEFRHTYGYEIPVDYLAARLADQAQVYTQHAYMRPLAVVLILAGIDEEAGPQLFKVDPAGYYVGYKATSAG 169
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BLAST of mRNA_H-elongata_contig76182.15297.1 vs. uniprot
Match: A0A196S7T7_BLAHN (Proteasome subunit alpha type n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S7T7_BLAHN)

HSP 1 Score: 58.9 bits (141), Expect = 3.760e-6
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 3 
Query:   12 DVQYLVECARAWCSEHRFVFGGPMPCQILVRRLADLVHSCTTRGGKRPLALDVLVGGVDHREGP-TLHRVQATGAFQRYKAFAAG 263
            D +Y V+ AR    + +  FG  MP ++L  R+   VH  T  GG RPL +++L GG DHRE    L+R+  +G   R+ A A G
Sbjct:   82 DGRYAVDRAREHTVQFKDNFGEEMPPRVLAERMGQFVHQFTCFGGARPLGINILFGGYDHREKKYDLYRITPSGQCFRHFAEAMG 166
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BLAST of mRNA_H-elongata_contig76182.15297.1 vs. uniprot
Match: D8LWA4_BLAHO (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LWA4_BLAHO)

HSP 1 Score: 57.8 bits (138), Expect = 4.300e-6
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 3 
Query:   12 DVQYLVECARAWCSEHRFVFGGPMPCQILVRRLADLVHSCTTRGGKRPLALDVLVGGVDHREGP-TLHRVQATGAFQRYKAFAAG 263
            D +Y V  AR    + +  FG  M  ++L  R+   VH  T  GG RPL +++L  G DHRE    L+R+  TG + R+ A A G
Sbjct:   75 DGRYAVGMARDHTVQFKDAFGEEMSPRVLAERMGQFVHQFTCYGGARPLGINLLFAGYDHREKKYDLYRITPTGQYYRHFAEAVG 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76182.15297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K6L4_9PHAE1.210e-2939.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGQ0_ECTSI2.020e-981.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I0YZR6_COCSC1.450e-636.05Proteasome subunit alpha type n=2 Tax=Coccomyxa Ta... [more]
A0A196S7T7_BLAHN3.760e-638.82Proteasome subunit alpha type n=1 Tax=Blastocystis... [more]
D8LWA4_BLAHO4.300e-637.65PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76182contigH-elongata_contig76182:523..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1347
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76182.15297.1prot_H-elongata_contig76182.15297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76182 603..2458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.647071-UTR-H-elongata_contig76182:522..6021622931166.647071-UTR-H-elongata_contig76182:522..602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76182 523..602 +
1691679725.6173084-UTR-H-elongata_contig76182:522..6021691679725.6173084-UTR-H-elongata_contig76182:522..602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76182 523..602 +
1622931166.7041252-UTR-H-elongata_contig76182:2458..27681622931166.7041252-UTR-H-elongata_contig76182:2458..2768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76182 2459..2768 +
1691679725.6539762-UTR-H-elongata_contig76182:2458..27681691679725.6539762-UTR-H-elongata_contig76182:2458..2768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76182 2459..2768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.6616597-CDS-H-elongata_contig76182:602..6251622931166.6616597-CDS-H-elongata_contig76182:602..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76182 603..625 +
1691679725.6258175-CDS-H-elongata_contig76182:602..6251691679725.6258175-CDS-H-elongata_contig76182:602..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76182 603..625 +
1622931166.6761515-CDS-H-elongata_contig76182:1083..11601622931166.6761515-CDS-H-elongata_contig76182:1083..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76182 1084..1160 +
1691679725.6354935-CDS-H-elongata_contig76182:1083..11601691679725.6354935-CDS-H-elongata_contig76182:1083..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76182 1084..1160 +
1622931166.6881566-CDS-H-elongata_contig76182:1601..24581622931166.6881566-CDS-H-elongata_contig76182:1601..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76182 1602..2458 +
1691679725.6443276-CDS-H-elongata_contig76182:1601..24581691679725.6443276-CDS-H-elongata_contig76182:1601..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76182 1602..2458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76182.15297.1

>prot_H-elongata_contig76182.15297.1 ID=prot_H-elongata_contig76182.15297.1|Name=mRNA_H-elongata_contig76182.15297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=319bp
MPCQILVRRLADLVHSCTTRGGKRPLALDVLVGGVDHREGPTLHRVQATG
AFQRYKAFAAGGGGAAASARLAADTWATTPTTTARTAEGMDREGSEDCPA
VFGSDRSPSGDVEVGAGHDSTRENWQEESGGEGSDSDDDEGEARYANMIK
EEEEDEVAAVKPAPAQAAAKKQRSLYRTRRRRLWTEAGGGEGEPPLTPEH
REAFKRAFLSMWDPDVEDDDDGSSTPFTGVVEEGQEPKSRDATYGGLRAS
ELSATVYGTRVSSASNEFGWDEGAGLELDREDEKRYEGFECSTSEVEAIL
VELDEEQRDAKKNRRGRV*
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mRNA from alignment at H-elongata_contig76182:523..2768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76182.15297.1 ID=mRNA_H-elongata_contig76182.15297.1|Name=mRNA_H-elongata_contig76182.15297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2246bp|location=Sequence derived from alignment at H-elongata_contig76182:523..2768+ (Himanthalia elongata Himel1 dioecious)
GGCTGAGGAGTGACGTCCAGTACCTGGTGGAATGTGCTCGCGCTTGGTGC
TCGGAACACCGCTTCGTCTTCGGGGGACCCATGCCTTGTCAGATTCTTGT
CAGGTGAAATAAATAAAAATCGATGGGGCGGGTCGAGACATCGAATGGCT
CTGGCGAGCAGTTTTTCCATTCTATTCCATTCTGTTGGATCGTCAGGGGC
AGGGAGTAGAATGGAAGAATGTCGAGAGGAGGCTTCGGTCAGTACGCACA
CGCATCGGTATATTTTCGACTCGACCTCCACATACGTTTTTTTTCTTCAA
AAATATAAACGGTACACATGCCTCTTCCCCTCCCCCAACTCCAATAGATA
TATCCCCTCTGTTAGCCGCCGAAGGCGCAGAATCGACTCTTAATATCGTC
TTAGTCTTCCCACCTAGTCGCTCGAGAGCCTTTGTTTTTTCTCAATGCGA
AAATAGCCACGACTTGCGTTTTTTAAACTCCCGTTACCCCCCCTCCCCCC
CCGCCCCCCATCCCTCTCTCTCTATATGTATGCATATTTTCGGGAACCTT
CGTCACACCAGGCGTCTTGCCGATCTTGTCCACTCCTGCACCACACGCGG
TGGCAAGAGGCCCCTGGCACTCGATGTACTAGTTGGGGGTGAGTGGAAAC
AATCAAGCCCAAAAATAGGAGATAGAAGTGACAAAATAGAACCGTTCCGT
TGACGCGCGGATGTTGTTTTGTGAATGGCCTGATTACTCTTGAAAAGAGA
GGCGGGGCGATTTGGGTGCATACATTCATCGAAGGGAAATTAAGCAAGTA
CGCCCCTGCTGCACGCGCGTACCGGCGAGGTTTGAGCCTACACGAGCCGT
GTTTCTCTTTTACCACCATCATTATAATCGTCATCATCCTCGCACTCTTG
ACTCTGTTCGTGGGACCTCATTTGCAGGGTCGTACGTTCGGCGTTCCTTT
GTTTCGTTCTGGTCCCCTTACGCTCCCGCCTCCAAATTATTTATTAGCGG
GTACATCGCTACTGCTGCTGATGCTCTCCTCGCCCGGAACGCGACGCATT
TTTTTTTGTCTGTTTTTAACGACTCACAGGAGTCGACCACCGCGAGGGCC
CAACCCTTCATCGGGTGCAAGCGACAGGGGCATTCCAGCGCTATAAGGCT
TTCGCGGCCGGGGGAGGGGGGGCGGCAGCCAGTGCTCGCCTTGCGGCTGA
TACTTGGGCAACAACACCGACAACAACAGCTAGAACGGCGGAGGGAATGG
ACCGAGAGGGAAGCGAAGATTGTCCAGCTGTCTTTGGGAGCGACAGATCC
CCTTCGGGAGACGTCGAGGTCGGCGCAGGGCATGATTCGACACGGGAGAA
TTGGCAGGAGGAATCTGGTGGTGAAGGCAGCGACTCCGATGATGACGAGG
GGGAAGCAAGATACGCAAACATGATCAAGGAAGAGGAGGAGGACGAGGTC
GCGGCGGTGAAACCAGCACCGGCACAGGCAGCAGCGAAAAAACAAAGGAG
TTTGTATAGAACTCGTCGACGACGGCTATGGACGGAGGCGGGGGGGGGGG
AGGGAGAGCCTCCCCTCACACCCGAGCACCGCGAGGCCTTCAAGCGCGCG
TTTTTATCGATGTGGGATCCTGATGTCGAGGACGACGACGATGGAAGCAG
CACACCTTTCACGGGTGTGGTGGAGGAAGGCCAGGAGCCAAAGTCGCGGG
ATGCCACGTACGGAGGACTCAGAGCTTCCGAGCTGTCGGCCACAGTCTAC
GGAACGCGTGTCTCATCGGCAAGTAATGAGTTCGGCTGGGACGAGGGCGC
GGGGTTGGAGTTAGATAGAGAGGATGAGAAGCGGTATGAGGGATTCGAGT
GCTCGACGTCGGAGGTAGAGGCGATATTGGTCGAGCTGGACGAGGAGCAA
CGCGATGCTAAGAAAAATAGGCGGGGAAGGGTTTAATTAATTGACGGGCA
GGCTATGCTATGGAGCGAGGGAGGGGGGGATCATTACTTCAAGAGTAGTA
CGAAGAGAAAATTGAAATCGAGGGGTCGATTTAGTATCCTCGCGCTCCTC
GGTCTTGACCCGTGTTAATTGGCCGATCGACGACGGTGACCCGTGCTGAT
TGGCCGATGGCTGATGCTGATTTAATTGACAAGGCAACAGGATACCACTC
TTTGCGCTGTATCATCTTTCTTTTGCAATATTGACGGGTCGAATAGTTCC
GCACGGGCATTCGCTCCATCACCCACGACGGCTTTTTGAATATAAT
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Coding sequence (CDS) from alignment at H-elongata_contig76182:523..2768+

>mRNA_H-elongata_contig76182.15297.1 ID=mRNA_H-elongata_contig76182.15297.1|Name=mRNA_H-elongata_contig76182.15297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1914bp|location=Sequence derived from alignment at H-elongata_contig76182:523..2768+ (Himanthalia elongata Himel1 dioecious)
ATGCCTTGTCAGATTCTTGTCAGATGCCTTGTCAGATTCTTGTCAGGCGT
CTTGCCGATCTTGTCCACTCCTGCACCACACGCGGTGGCAAGAGGCCCCT
GGCACTCGATGTACTAGTTGGGGGCGTCTTGCCGATCTTGTCCACTCCTG
CACCACACGCGGTGGCAAGAGGCCCCTGGCACTCGATGTACTAGTTGGGG
GAGTCGACCACCGCGAGGGCCCAACCCTTCATCGGGTGCAAGCGACAGGG
GCATTCCAGCGCTATAAGGCTTTCGCGGCCGGGGGAGGGGGGGCGGCAGC
CAGTGCTCGCCTTGCGGCTGATACTTGGGCAACAACACCGACAACAACAG
CTAGAACGGCGGAGGGAATGGACCGAGAGGGAAGCGAAGATTGTCCAGCT
GTCTTTGGGAGCGACAGATCCCCTTCGGGAGACGTCGAGGTCGGCGCAGG
GCATGATTCGACACGGGAGAATTGGCAGGAGGAATCTGGTGGTGAAGGCA
GCGACTCCGATGATGACGAGGGGGAAGCAAGATACGCAAACATGATCAAG
GAAGAGGAGGAGGACGAGGTCGCGGCGGTGAAACCAGCACCGGCACAGGC
AGCAGCGAAAAAACAAAGGAGTTTGTATAGAACTCGTCGACGACGGCTAT
GGACGGAGGCGGGGGGGGGGGAGGGAGAGCCTCCCCTCACACCCGAGCAC
CGCGAGGCCTTCAAGCGCGCGTTTTTATCGATGTGGGATCCTGATGTCGA
GGACGACGACGATGGAAGCAGCACACCTTTCACGGGTGTGGTGGAGGAAG
GCCAGGAGCCAAAGTCGCGGGATGCCACGTACGGAGGACTCAGAGCTTCC
GAGCTGTCGGCCACAGTCTACGGAACGCGTGTCTCATCGGCAAGTAATGA
GTTCGGCTGGGACGAGGGCGCGGGGTTGGAGTTAGATAGAGAGGATGAGA
AGCGGTATGAGGGATTCGAGTGCTCGACGTCGGAGGTAGAGGCGATATTG
GTCGAGCTGGACGAGGAGCAACGCGATGCTAAGAAAAATAGGCGGGGAAG
GGTTTAAGAGTCGACCACCGCGAGGGCCCAACCCTTCATCGGGTGCAAGC
GACAGGGGCATTCCAGCGCTATAAGGCTTTCGCGGCCGGGGGAGGGGGGG
CGGCAGCCAGTGCTCGCCTTGCGGCTGATACTTGGGCAACAACACCGACA
ACAACAGCTAGAACGGCGGAGGGAATGGACCGAGAGGGAAGCGAAGATTG
TCCAGCTGTCTTTGGGAGCGACAGATCCCCTTCGGGAGACGTCGAGGTCG
GCGCAGGGCATGATTCGACACGGGAGAATTGGCAGGAGGAATCTGGTGGT
GAAGGCAGCGACTCCGATGATGACGAGGGGGAAGCAAGATACGCAAACAT
GATCAAGGAAGAGGAGGAGGACGAGGTCGCGGCGGTGAAACCAGCACCGG
CACAGGCAGCAGCGAAAAAACAAAGGAGTTTGTATAGAACTCGTCGACGA
CGGCTATGGACGGAGGCGGGGGGGGGGGAGGGAGAGCCTCCCCTCACACC
CGAGCACCGCGAGGCCTTCAAGCGCGCGTTTTTATCGATGTGGGATCCTG
ATGTCGAGGACGACGACGATGGAAGCAGCACACCTTTCACGGGTGTGGTG
GAGGAAGGCCAGGAGCCAAAGTCGCGGGATGCCACGTACGGAGGACTCAG
AGCTTCCGAGCTGTCGGCCACAGTCTACGGAACGCGTGTCTCATCGGCAA
GTAATGAGTTCGGCTGGGACGAGGGCGCGGGGTTGGAGTTAGATAGAGAG
GATGAGAAGCGGTATGAGGGATTCGAGTGCTCGACGTCGGAGGTAGAGGC
GATATTGGTCGAGCTGGACGAGGAGCAACGCGATGCTAAGAAAAATAGGC
GGGGAAGGGTTTAA
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