mRNA_H-elongata_contig76156.15296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76156.15296.1
Unique NamemRNA_H-elongata_contig76156.15296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.720e-61
Identity = 98/126 (77.78%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGRISLHTGDFRADESVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQCVV 378
            +DHTTGLYKSFSAG IY S GTA LI ELMGVN ERVV LPM+ PV+VAGF+LTL+DANHCPAAVMF+IRDPRPGGR +LHTGDFRA ESVC NP+V +L+GR+D+LYLDTTYC PRHTFP Q  V
Sbjct:   38 SDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFDLTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVKSLKGRLDSLYLDTTYCGPRHTFPDQSEV 163          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A8J5XFD5_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD5_DIALT)

HSP 1 Score: 127 bits (320), Expect = 1.070e-31
Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    4 DHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGRISLHTGDFRADESVCANPMVTAL--RGRVDTLYLDTTYCAPRHTFPTQCVV 378
            DHT GL  SF AGTIY SQ TA L+  +  V+A+RVV L +++  +V G E+T  DANHCP AV    R+PR G   +LHTGDFRA+  VC +P +  L   G VDTL+LDTTYCAPR  FP Q  V
Sbjct:   42 DHTVGLNASFCAGTIYCSQITANLVIAVGLVDAKRVVALALDETSLVDGVEVTPFDANHCPGAVCLHFRNPRTGAT-ALHTGDFRAERCVCESPTLARLLAAGPVDTLFLDTTYCAPRWRFPAQAAV 167          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI)

HSP 1 Score: 121 bits (304), Expect = 1.520e-29
Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGR---ISLHTGDFRADESVCANPMVTALRGR-VDTLYLDTTYCAPRHTFPTQ 369
            +DHT GLY+SF++GTI+ S+ TA L+   MG+ ++ +  LPM++ V + G E+T +DANHCP +VM L + P  GGR   + LHTGDFR  E +   P   +LR   +DT+YLDTTY  PRHTFP+Q
Sbjct:   38 SDHTIGLYRSFNSGTIFCSRITAALLINCMGLRSDCIQVLPMDKTVTIDGVEVTALDANHCPGSVMLLFKVPGHGGRPAQVILHTGDFRYHERMADYP---SLRNTLIDTIYLDTTYAYPRHTFPSQ 161          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: I0YMI9_COCSC (DRMBL-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMI9_COCSC)

HSP 1 Score: 117 bits (293), Expect = 1.940e-29
Identity = 62/129 (48.06%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGG-----RISLHTGDFRADESVCANPMVTALRG-RVDTLYLDTTYCAPRHTFPTQ 369
            +DHTTGL  SFS+GTIY S  TA L+ + M +N   +  LP+N P++V G  +TL+DANHCP AV+FL + P P G     ++ LHTGD R    +  +P   AL+  R+D L+LDTTY +P+H FP Q
Sbjct:   28 SDHTTGLTTSFSSGTIYCSAVTANLLVKDMHINPSCIQPLPLNIPLLVDGINVTLIDANHCPGAVLFLFKTPPPPGSEFSEQVILHTGDMRWHPRMGRHP---ALKNQRIDMLFLDTTYASPKHVFPCQ 153          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A8J4FA51_9CHLO (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4FA51_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 3.780e-29
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGRISLHTGDFRADESVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQ 369
            +DH +GL  ++  G IY S+ TARL+  L GV+   +  LPM QPVMVAG E+TLVDANHCP AV  L R P  G R  LH GD R   S+ + P++ A RG  + ++LDTTYC P+HTFP Q
Sbjct:   41 SDHYSGLNDNWCNGPIYCSETTARLVVHLCGVDPSHLRPLPMKQPVMVAGVEVTLVDANHCPGAVQLLFRLPGSGARY-LHCGDMRFCASMTSCPLLGAWRG-CEAVFLDTTYCHPKHTFPLQ 161          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A8J4GQX1_9CHLO (Lactamase_B domain-containing protein (Fragment) n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GQX1_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 1.330e-28
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGRISLHTGDFRADESVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQ 369
            +DH +GL  ++  G IY S+ TARL+  L GV+   +  LPM QPVMVAG E+TLV ANHCP AV  L R P  G R  LH GD R   S+ + P++ A RG  D ++LDTTYC P+HTFP Q
Sbjct:   41 SDHYSGLTDNWCNGPIYCSEITARLVVHLCGVDPSHLRPLPMKQPVMVAGVEVTLVGANHCPGAVQLLFRLPGSGARY-LHCGDMRFCSSMTSCPLLGAWRG-CDAVFLDTTYCHPKHTFPLQ 161          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A087SIS5_AUXPR (DNA cross-link repair 1 protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIS5_AUXPR)

HSP 1 Score: 113 bits (282), Expect = 1.740e-28
Identity = 69/127 (54.33%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 DHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGG----RISLHTGDFRADE-SVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQ 369
            DHTTGL K F AGTIY S  TARL+   MG+ A  V  L  +  V V G  +T + ANHCP AVMFL   P  GG    R  LHTGD R D+ ++ A P + AL G +DTL LDTTYCAPR TFP Q
Sbjct:   39 DHTTGLTKGFDAGTIYCSPVTARLLIRDMGLRAGVVCPLSPHVTVEVGGVAVTPLPANHCPGAVMFLFVIPGDGGGRPPRTVLHTGDMRWDDGAMMAYPALRAL-GTLDTLVLDTTYCAPRWTFPPQ 164          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A507EAU8_9FUNG (Lactamase_B domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAU8_9FUNG)

HSP 1 Score: 118 bits (295), Expect = 2.370e-28
Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGRISLHTGDFRADESVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQ 369
            ADH  GL + F+ G +Y S  T  L+   +GV+ + +V LPM  PV+V G ++TL+DANHCP AV+FL     P G+  LHTGDFRA  S   +P +  L   + T+YLDTTYCAP H FP Q
Sbjct:  343 ADHYGGLTRQFNHGPVYCSVVTGNLVARQLGVSEDYIVRLPMETPVVVMGVKVTLIDANHCPGAVLFLFE--LPNGKRYLHTGDFRAHPSHLTHPYLRTLA--IHTIYLDTTYCAPAHRFPPQ 461          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A507CJ92_9FUNG (Lactamase_B domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CJ92_9FUNG)

HSP 1 Score: 117 bits (294), Expect = 3.240e-28
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGGRIS--LHTGDFRADESVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQCVV 378
            +DH  GL K+F+ G IY S+ T+ L+   + V  + V  LPMN+ V V    +TLVDANHCP AV+FL   P+  G++S  LHTGDFRA     ANP++ + R  +D LYLDTTYC P H FP Q  V
Sbjct:  342 SDHYGGLTKAFTHGIIYCSKVTSNLVVNQLKVPPKYVKALPMNERVQVENVFVTLVDANHCPGAVLFLFEVPQANGKMSTYLHTGDFRASPQHIANPIINSQR--LDLLYLDTTYCKPAHKFPPQDAV 467          
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 6.180e-28
Identity = 59/128 (46.09%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAGFELTLVDANHCPAAVMFLIRDPRPGG-----RISLHTGDFRADESVCANPMVTALRGRVDTLYLDTTYCAPRHTFPTQ 369
            +DHT GL  SFSAGTIY S+ TA L+ + M +N   +  LP++ P++V G  +TL+DANHCP AV+FL + P P G     ++ LHTGD R    +  +P +   + R+D L+LDTTY +P+H FP Q
Sbjct:   38 SDHTIGLSTSFSAGTIYCSKVTANLLVKDMRINPSCIQPLPLDTPLLVDGVHVTLIDANHCPGAVLFLFKTPAPPGSEFPEQVILHTGDMRWHPRMGRHPALA--KQRIDMLFLDTTYASPKHVFPCQ 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76156.15296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUD2_ECTSI3.720e-6177.78DRMBL domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8J5XFD5_DIALT1.070e-3154.33SWIM-type domain-containing protein n=1 Tax=Diacro... [more]
A0A1Y1HYN4_KLENI1.520e-2949.61Putative DNA repair metallo-beta-lactamase family ... [more]
I0YMI9_COCSC1.940e-2948.06DRMBL-domain-containing protein (Fragment) n=1 Tax... [more]
A0A8J4FA51_9CHLO3.780e-2952.03Lactamase_B domain-containing protein (Fragment) n... [more]
A0A8J4GQX1_9CHLO1.330e-2852.03Lactamase_B domain-containing protein (Fragment) n... [more]
A0A087SIS5_AUXPR1.740e-2854.33DNA cross-link repair 1 protein n=1 Tax=Auxenochlo... [more]
A0A507EAU8_9FUNG2.370e-2848.78Lactamase_B domain-containing protein n=1 Tax=Powe... [more]
A0A507CJ92_9FUNG3.240e-2849.22Lactamase_B domain-containing protein n=1 Tax=Sync... [more]
A0A8J9WR85_9CHLO6.180e-2846.09Probable DNA cross-link repair 1A protein at N-ter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76156contigH-elongata_contig76156:194..892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue5.2e-52
Seed eggNOG ortholog2880.D8LUD2
KEGG koko:K15340
EggNOG free text desc.protection from non-homologous end joining at telomere
EggNOG OGsCOG1236@1,KOG1361@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.5877016-CDS-H-elongata_contig76156:193..3741622931166.5877016-CDS-H-elongata_contig76156:193..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76156 194..374 -
1691679725.578943-CDS-H-elongata_contig76156:193..3741691679725.578943-CDS-H-elongata_contig76156:193..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76156 194..374 -
1622931166.6044102-CDS-H-elongata_contig76156:695..8921622931166.6044102-CDS-H-elongata_contig76156:695..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76156 696..892 -
1691679725.6071732-CDS-H-elongata_contig76156:695..8921691679725.6071732-CDS-H-elongata_contig76156:695..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76156 696..892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76156.15296.1prot_H-elongata_contig76156.15296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76156 194..892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76156.15296.1

>prot_H-elongata_contig76156.15296.1 ID=prot_H-elongata_contig76156.15296.1|Name=mRNA_H-elongata_contig76156.15296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
ADHTTGLYKSFSAGTIYASQGTARLITELMGVNAERVVGLPMNQPVMVAG
FELTLVDANHCPAAVMFLIRDPRPGGRISLHTGDFRADESVCANPMVTAL
RGRVDTLYLDTTYCAPRHTFPTQCVV
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mRNA from alignment at H-elongata_contig76156:194..892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76156.15296.1 ID=mRNA_H-elongata_contig76156.15296.1|Name=mRNA_H-elongata_contig76156.15296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig76156:194..892- (Himanthalia elongata Himel1 dioecious)
GCAGATCACACCACGGGACTGTACAAAAGCTTCTCGGCCGGCACGATCTA CGCCTCCCAGGGCACGGCGCGGCTCATCACGGAGCTCATGGGAGTCAACG CCGAGAGAGTGGTGGGGCTCCCAATGAACCAACCGGTCATGGTAGCCGGG TTCGAGCTGACCCTCGTCGACGCCAACCATTGTCCCGCGGCCGTCATGTA AGAAGTGTCAAGAGGCAAACAGAGGTAGACCAAACCATCCCTGTTGTGGT TATCGTTGTCGTTGAACTTTTCCCGAGCTGTTGTCGTTGTCGTAAGTCTA CGGCGCGAAATGTTCTTGTACCGATTAAGGTACTTTATACTGTTTGTCGC TTGGAAAGCTGTATAACTGCTCTCAACCGGGAGCAGAAGCGTGTTTGTGG GGGGGGGACGGGGCGAGGAATTCGGCACGCCCATGTAGAGTACGCCGCAA CATCGTTGGGCTAAGTCAACGAATCCGATGAAGCAGAATCCCTCGTTCGT TTATTTTTTTGCAACTAGGTTCCTCATCCGCGACCCGCGGCCCGGGGGTC GCATTTCCCTGCACACAGGGGATTTCAGGGCGGACGAGTCCGTCTGCGCG AATCCCATGGTCACTGCGTTGAGAGGGCGGGTCGACACCCTCTACCTAGA CACCACCTACTGTGCTCCGCGACACACCTTTCCGACCCAGTGTGTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig76156:194..892-

>mRNA_H-elongata_contig76156.15296.1 ID=mRNA_H-elongata_contig76156.15296.1|Name=mRNA_H-elongata_contig76156.15296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig76156:194..892- (Himanthalia elongata Himel1 dioecious)
GCAGATCACACCACGGGACTGTACAAAAGCTTCTCGGCCGGCACGATCTA
CGCCTCCCAGGGCACGGCGCGGCTCATCACGGAGCTCATGGGAGTCAACG
CCGAGAGAGTGGTGGGGCTCCCAATGAACCAACCGGTCATGGTAGCCGGG
TTCGAGCTGACCCTCGTCGACGCCAACCATTGTCCCGCGGCCGTCATGCA
GATCACACCACGGGACTGTACAAAAGCTTCTCGGCCGGCACGATCTACGC
CTCCCAGGGCACGGCGCGGCTCATCACGGAGCTCATGGGAGTCAACGCCG
AGAGAGTGGTGGGGCTCCCAATGAACCAACCGGTCATGGTAGCCGGGTTC
GAGCTGACCCTCGTCGACGCCAACCATTGTCCCGCGGCCGTCATGTTCCT
CATCCGCGACCCGCGGCCCGGGGGTCGCATTTCCCTGCACACAGGGGATT
TCAGGGCGGACGAGTCCGTCTGCGCGAATCCCATGGTCACTGCGTTGAGA
GGGCGGGTCGACACCCTCTACCTAGACACCACCTACTGTGCTCCGCGACA
CACCTTTCCGACCCAGTGTGTGGTGGTTCCTCATCCGCGACCCGCGGCCC
GGGGGTCGCATTTCCCTGCACACAGGGGATTTCAGGGCGGACGAGTCCGT
CTGCGCGAATCCCATGGTCACTGCGTTGAGAGGGCGGGTCGACACCCTCT
ACCTAGACACCACCTACTGTGCTCCGCGACACACCTTTCCGACCCAGTGT
GTGGTG
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