mRNA_H-elongata_contig76127.15294.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76127.15294.1
Unique NamemRNA_H-elongata_contig76127.15294.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.280e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR
Sbjct:  400 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 439
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR
Sbjct:  306 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 345
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.030e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER+AVLSE+TMVNTIDYR+ECQ+L+ALHAEN LSR
Sbjct:  139 SRLEKERAAVLSEMTMVNTIDYRVECQILAALHAENMLSR 178
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A7S2WGW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGW2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.670e-12
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER AVLSE+TMVNTI+YR+ECQ+LS LH EN+L++
Sbjct:  112 SRLEKERQAVLSEMTMVNTIEYRVECQILSTLHRENRLAK 151
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A7S4D551_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D551_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 4.790e-12
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER+AVLSE+TMVNTIDYR+ECQ+L ALH EN L++
Sbjct:  234 SRLEKERAAVLSEMTMVNTIDYRVECQILGALHQENMLAQ 273
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A7S2V8S7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V8S7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.810e-12
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER+AVLSE+TMVNTI+YR+ECQ+LS LH EN+L++
Sbjct:  191 SRLEKERAAVLSEMTMVNTIEYRVECQILSTLHRENRLAK 230
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A8J9TDL0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TDL0_PHATR)

HSP 1 Score: 66.6 bits (161), Expect = 5.050e-12
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER+AVLSE+TMVNTI+YR+ECQ+LS LH EN+L++
Sbjct:  120 SRLEKERAAVLSEMTMVNTIEYRVECQILSTLHRENRLAK 159
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: W7U2D5_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.760e-12
Identity = 29/39 (74.36%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLS 117
            SRLEKER+A+LSE++MVNT+DYR+ECQ+L+ALHAEN+L+
Sbjct:  295 SRLEKERAAILSEMSMVNTMDYRVECQILAALHAENKLA 333
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.760e-12
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER+AVLSE+TMVNTI+YR+ECQ+LS LH EN+L++
Sbjct:  230 SRLEKERAAVLSEMTMVNTIEYRVECQILSTLHRENRLAK 269
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BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Match: A0A7S4EKG3_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4EKG3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.760e-12
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR 120
            SRLEKER+AVLSE+TMVNTI+YR+ECQ+LS LH EN+L++
Sbjct:  234 SRLEKERAAVLSEMTMVNTIEYRVECQILSTLHRENRLAK 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76127.15294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCY0_9PHAE3.280e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0R1_ECTSI3.290e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C760_9STRA9.030e-1485.00Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A7S2WGW2_9STRA1.670e-1275.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4D551_HETAK4.790e-1277.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V8S7_9STRA4.810e-1275.00Hypothetical protein (Fragment) n=2 Tax=Amphiprora... [more]
A0A8J9TDL0_PHATR5.050e-1275.00Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
W7U2D5_9STRA9.760e-1274.36Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S4HUK7_9STRA9.760e-1275.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4EKG3_9STRA9.760e-1275.00Hypothetical protein n=2 Tax=Pseudo-nitzschia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76127contigH-elongata_contig76127:2728..2850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog2880.D7G0R1
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.4624028-CDS-H-elongata_contig76127:2727..28501622931166.4624028-CDS-H-elongata_contig76127:2727..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76127 2728..2850 +
1691679725.5335574-CDS-H-elongata_contig76127:2727..28501691679725.5335574-CDS-H-elongata_contig76127:2727..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76127 2728..2850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76127.15294.1prot_H-elongata_contig76127.15294.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76127 2728..2850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76127.15294.1

>prot_H-elongata_contig76127.15294.1 ID=prot_H-elongata_contig76127.15294.1|Name=mRNA_H-elongata_contig76127.15294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
SRLEKERSAVLSELTMVNTIDYRMECQVLSALHAENQLSR*
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mRNA from alignment at H-elongata_contig76127:2728..2850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76127.15294.1 ID=mRNA_H-elongata_contig76127.15294.1|Name=mRNA_H-elongata_contig76127.15294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig76127:2728..2850+ (Himanthalia elongata Himel1 dioecious)
TCACGTCTGGAGAAGGAAAGAAGCGCTGTGCTATCCGAGCTGACGATGGT
CAACACCATCGACTACCGCATGGAATGCCAGGTCCTTTCCGCCCTGCACG
CCGAGAATCAGCTCTCGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig76127:2728..2850+

>mRNA_H-elongata_contig76127.15294.1 ID=mRNA_H-elongata_contig76127.15294.1|Name=mRNA_H-elongata_contig76127.15294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig76127:2728..2850+ (Himanthalia elongata Himel1 dioecious)
TCACGTCTGGAGAAGGAAAGAAGCGCTGTGCTATCCGAGCTGACGATGGT
CAACACCATCGACTACCGCATGGAATGCCAGGTCCTTTCCGCCCTGCACG
CCGAGAATCAGCTCTCGAGGTGATCACGTCTGGAGAAGGAAAGAAGCGCT
GTGCTATCCGAGCTGACGATGGTCAACACCATCGACTACCGCATGGAATG
CCAGGTCCTTTCCGCCCTGCACGCCGAGAATCAGCTCTCGAGGTGA
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