mRNA_H-elongata_contig76120.15293.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76120.15293.1
Unique NamemRNA_H-elongata_contig76120.15293.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.490e-50
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL
Sbjct: 1754 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 1839
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.500e-50
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL
Sbjct: 2076 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 2161
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: B8LC33_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC33_THAPS)

HSP 1 Score: 160 bits (404), Expect = 2.010e-49
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDF 255
            RFN D K+FCFILSTRSGGLGINLTGADTV+FYDSDWNPAMDAQAQDRAHRIGQTREVHIYR+VT  SIEENIL KA+QKR+LDF
Sbjct:   17 RFNTDTKVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRMVTEHSIEENILTKAKQKRNLDF 101
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A7S1U7E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7E9_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.760e-48
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFN D KLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLV+ S+IEENIL+KA+QK+ LDFL
Sbjct:  105 RFNSDEKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVSQSTIEENILRKAKQKQQLDFL 190
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: B7FYZ5_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYZ5_PHATC)

HSP 1 Score: 155 bits (392), Expect = 2.960e-47
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHL 249
            RFN DPKLFCFILSTRSGGLGINLTGAD+VIFYDSDWNPAMDAQAQDRAHRIGQTR+VHIYR VT  +IEENIL KAQQKR+L
Sbjct:   44 RFNNDPKLFCFILSTRSGGLGINLTGADSVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRFVTEHTIEENILVKAQQKRNL 126
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A835ZAC2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC2_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.230e-47
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFN D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLVT +++EENILKKAQQKRHLD L
Sbjct:  121 RFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHL 206
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A7S3UX30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX30_HETAK)

HSP 1 Score: 157 bits (397), Expect = 5.750e-47
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFN D ++FCFILSTRSGGLGINLTGADTV+FYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRLV  S++EENIL+KAQQKR LD L
Sbjct:  101 RFNADTRVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVCRSTVEENILRKAQQKRRLDHL 186
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A813C9Q4_9DINO (Dom protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C9Q4_9DINO)

HSP 1 Score: 155 bits (393), Expect = 1.450e-46
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    4 FNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHL 249
            FN D ++FCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRLVT S++EENIL KAQQKRHL
Sbjct:   38 FNNDTRIFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTESTVEENILLKAQQKRHL 119
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BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A7S2UQV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQV7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.230e-46
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFN D K+FCFILSTRSGGLGINLTGADTV+FYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRLVT  SIEENIL KA+QKRHLDFL
Sbjct:  102 RFNNDDKVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFL 187
[Close]
BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Match: A0A7S1US36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1US36_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.420e-46
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL 258
            RFN+D K+FCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRL+T  SIEENI  KAQQKR+LD +
Sbjct:   50 RFNMDEKIFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLITEHSIEENIWTKAQQKRNLDAI 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76120.15293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP0_ECTSI2.490e-50100.00Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A6H5KKD6_9PHAE2.500e-50100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8LC33_THAPS2.010e-4988.24Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S1U7E9_9STRA6.760e-4889.53Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
B7FYZ5_PHATC2.960e-4789.16Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A835ZAC2_9STRA4.230e-4787.21P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3UX30_HETAK5.750e-4784.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A813C9Q4_9DINO1.450e-4689.02Dom protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
A0A7S2UQV7_9STRA2.230e-4689.53Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1US36_9STRA7.420e-4686.05Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76120contigH-elongata_contig76120:781..2694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2e-42
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.392668-CDS-H-elongata_contig76120:780..9001622931166.392668-CDS-H-elongata_contig76120:780..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76120 781..900 -
1691679725.5085707-CDS-H-elongata_contig76120:780..9001691679725.5085707-CDS-H-elongata_contig76120:780..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76120 781..900 -
1622931166.4122603-CDS-H-elongata_contig76120:2556..26941622931166.4122603-CDS-H-elongata_contig76120:2556..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76120 2557..2694 -
1691679725.522151-CDS-H-elongata_contig76120:2556..26941691679725.522151-CDS-H-elongata_contig76120:2556..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76120 2557..2694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76120.15293.1prot_H-elongata_contig76120.15293.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76120 781..2694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76120.15293.1

>prot_H-elongata_contig76120.15293.1 ID=prot_H-elongata_contig76120.15293.1|Name=mRNA_H-elongata_contig76120.15293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
RFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAH
RIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFL
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mRNA from alignment at H-elongata_contig76120:781..2694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76120.15293.1 ID=mRNA_H-elongata_contig76120.15293.1|Name=mRNA_H-elongata_contig76120.15293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1914bp|location=Sequence derived from alignment at H-elongata_contig76120:781..2694- (Himanthalia elongata Himel1 dioecious)
AGGTTTAACCTCGACCCCAAGCTGTTCTGCTTCATCCTGTCGACACGATC
CGGGGGCCTGGGCATCAATCTCACCGGCGCAGATACCGTCATCTTCTACG
ACTCCGACTGGAACCCCGCCATGGATGCACAGGCGCAGGTGCTTGTACGC
TGTGTATAGTAATATTCATATAAAATAATATCACACGCTGGGTGAAGGCG
TGTTCTGCCGAAAATCACGATCACATCCCCCCCCCCTTACTCTATTTATA
GTATATAATATTATTAGTGTAAGCATCCGTTGACATGGGTACACAGTACA
CACATACTGGGCACTGAAAACCTTTTGAGAGGGAAAAATATGCAACACGA
TTAACTAATAATATTGAAAGGGGGTGAAAAATATCAGCCCAATAAAAATC
TGGGAATTTTCCCCATCGGCGGGGTGATGTTATATCGGGATAGGGTTCAT
GGGGTTGTTGTAGAGAGCTATGGCGTTTTTTGTTTTGAAGATCTTTGAGG
TAGGGCTAAAAACTGGTCCAACTATTTTTTGACTGGCCTCTGTTTGGTAT
TATATATTGATAAATGTAGCAACCCGATAGCTGAACGGGTCTGGCCTCCC
AGTCTCCAGTCTCGACACTTTGTAAGGCCACTTGTTCGATCAGTTTGAAG
GCCTTGGGTTTCTTCATAGGCTCTTGAGCTGGCCATTGCCGTTGCCGGTT
GTTTGTACAGCGCCTGTGGTGAGCACGCCGGCGAGACTTTTGCCTTGCTT
CCTTGCTTGGGTTTCACATTGTAATAGCATGTCTGATGATTGATTGATTG
ATTGACACACCTGCAGCCGACCGGTCTCCTCCACACTGATCGATCCCGCT
CGTGGTCTCAAAAGAGATAAAAAGGTCACACACAGAAGATATCACATTGG
ACATCCACACATGCGACGCACGAAATATACTAGCCAGGAACCAGCCTCAG
CCTCAGCTTCAGCCTCAAACGAAGAATCCCAATACCTAGAACGAGACCTG
ACTACAGCCTACAACTAAAACATGTCTTCACATGTCCAAGAGCTACGTAA
AGTACTGTCTGAAGTGCTTCTTAGACCCATACAGAAGCAACTAACTACTA
CTACTACTACTAATAGTAGTGTGGGGCCAAACTAGAGAAGAGAGATGAAG
AGTTACTGCTGTAAACAGAGAAGAATATTCAACATTCAACATAAAGAAAG
CTGTATCGCTGTCTGAGGTGCTGTCAGATTCCATGCTAGAATGAGCCCAA
AGCAAGTCAAAAAACAACCTAACCTACCCACGCATGTGATAAAAGCTCTC
AGCACTAGTACGACGAACCGGACCATGCAAATTATTGCTTCCTCTTTACA
AAATCCCAAGAATCACAAATCTTCTCGCAGCCAAAACCTCCCGACGAAAT
AGTTGCTCCGCTGTTCCGCGGGGATGACCTTGGTTCCGTTCTGAATGCCC
GTTCTGGTCCCATCCAGAGACGCACTCGGTCTATTTTGTCCATTCAGCCT
ATTTGTGAAGAGCAAAAGCCATATAATTGACTGGGAAGATTTGATAGTAA
TGTCACCCTCATGATGATAGTCAGGCAAATCGGTGACCGTCCGCATCCTG
AGAGAGAATGAGCGACCGGACGGATGGACGGTCGAGAGAAACGAAGGGGA
ACGAATGGGAATCGGATTGAGCGAAACGTGCATCACCTCTGGTGGACGTT
TCATACACTAACACACTAACACACACACACAGGGTTATGAAGGTGTTAAG
TGTGTGTACTTATTAAATTGCACTTGTGTCGGTGTGTGACGCAGGATCGG
GCGCACCGGATCGGTCAGACCCGGGAGGTTCACATCTACCGCCTCGTCAC
GTCGAGCTCTATCGAGGAGAACATCCTCAAGAAGGCTCAGCAGAAGCGAC
ACCTGGACTTCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig76120:781..2694-

>mRNA_H-elongata_contig76120.15293.1 ID=mRNA_H-elongata_contig76120.15293.1|Name=mRNA_H-elongata_contig76120.15293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig76120:781..2694- (Himanthalia elongata Himel1 dioecious)
AGGTTTAACCTCGACCCCAAGCTGTTCTGCTTCATCCTGTCGACACGATC
CGGGGGCCTGGGCATCAATCTCACCGGCGCAGATACCGTCATCTTCTACG
ACTCCGACTGGAACCCCGCCATGGATGCACAGGCGCAGAGGTTTAACCTC
GACCCCAAGCTGTTCTGCTTCATCCTGTCGACACGATCCGGGGGCCTGGG
CATCAATCTCACCGGCGCAGATACCGTCATCTTCTACGACTCCGACTGGA
ACCCCGCCATGGATGCACAGGCGCAGGATCGGGCGCACCGGATCGGTCAG
ACCCGGGAGGTTCACATCTACCGCCTCGTCACGTCGAGCTCTATCGAGGA
GAACATCCTCAAGAAGGCTCAGCAGAAGCGACACCTGGACTTCTTGGATC
GGGCGCACCGGATCGGTCAGACCCGGGAGGTTCACATCTACCGCCTCGTC
ACGTCGAGCTCTATCGAGGAGAACATCCTCAAGAAGGCTCAGCAGAAGCG
ACACCTGGACTTCTTG
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