mRNA_H-elongata_contig76089.15289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76089.15289.1
Unique NamemRNA_H-elongata_contig76089.15289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76089.15289.1 vs. uniprot
Match: D8LDU8_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.370e-23
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   16 AQNFSLPLAAEGEGSVFPVDLSIARSYSATVIEIGVITSVSIFDINTHVGEFWFLIDATWMNNWVQFIMGKQEPPGPISNYNLY 267
            ++ F+ PLA+EG GSVFPV L +++  +    E+ ++      D+NTHVGEFWF+IDA WM+ WV F+MGK  PPGPISN+NL+
Sbjct:  152 SRRFAQPLASEGHGSVFPVGLPLSKRRA---FEVEIMKRFDRLDVNTHVGEFWFIIDAIWMSTWVNFVMGKSGPPGPISNHNLF 232
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BLAST of mRNA_H-elongata_contig76089.15289.1 vs. uniprot
Match: A0A6H5JRW1_9PHAE (DUSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.230e-22
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   16 AQNFSLPLAAEGEGSVFPVDLSIARSYSATVIEIGVITSVS----IFDINTHVGEFWFLIDATWMNNWVQFIMGKQEPPGPISNYNLY 267
            ++ F+ PLA+EG GSVFPV+L +++  +    E+ +I        + D+NTHVGEFWF+IDA WM+ WV F+MGK  PPGPISN+NL+
Sbjct:  114 SRRFAQPLASEGHGSVFPVELPLSKRRA---FEVEIIKRFDRRRQLLDVNTHVGEFWFIIDAIWMSTWVNFVMGKSGPPGPISNHNLF 198
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BLAST of mRNA_H-elongata_contig76089.15289.1 vs. uniprot
Match: D7FUK5_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.040e-17
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 ASGRTAQNFSLPLAAEGEGSVFPVDLSIARSYSATVIEIGVITSVSIFDINTHVGEFWFLIDATWMNNWVQFIMGKQEPPGPISNYNLYDQ 273
            A  +  + F+ PLA+EG GSVFP+DL ++   S  V E+  I       IN ++GEFW LIDA W++ WV F++G+  PPGPISN  L+ +
Sbjct:  124 ADAKATEIFAQPLASEGAGSVFPLDLPMS---SRRVYEVEFIKQFDRLAINPNIGEFWMLIDAHWVSRWVAFVLGQAGPPGPISNGRLFTE 211
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BLAST of mRNA_H-elongata_contig76089.15289.1 vs. uniprot
Match: D7FUK4_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK4_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.920e-13
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   61 VFPVDLSIARSYSATVIEIGVITSVSIFDINTHVGEFWFLIDATWMNNWVQFIMGKQEPPGPISNYNLY 267
            VFP +  + R  +    E+ +I       IN HVGEFWF+IDA W+N+WV+F+MG+   PGPISN NLY
Sbjct:  200 VFPAEFPLDRRRAT---ELALIKKFDRPTINPHVGEFWFVIDAKWINSWVKFVMGQASAPGPISNLNLY 265
[Close]
BLAST of mRNA_H-elongata_contig76089.15289.1 vs. uniprot
Match: A0A6H5JRF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.510e-12
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  148 INTHVGEFWFLIDATWMNNWVQFIMGKQEPPGPISNYNLYDQ 273
            IN HVGEFWF+IDA W+N+WV+F+MG+   PG ISN NLY Q
Sbjct:  264 INPHVGEFWFVIDAKWINSWVKFVMGQASAPGAISNLNLYPQ 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76089.15289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LDU8_ECTSI5.370e-2352.38DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRW1_9PHAE1.230e-2251.14DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUK5_ECTSI3.040e-1745.05DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUK4_ECTSI1.920e-1349.28DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRF3_9PHAE4.510e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76089contigH-elongata_contig76089:373..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.9e-18
Seed eggNOG ortholog2880.D8LDU8
EggNOG free text desc.Source PGD
EggNOG OGs2EE7P@1,2SJP6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76089.15289.1prot_H-elongata_contig76089.15289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76089 373..2500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.918855-CDS-H-elongata_contig76089:372..4641622931165.918855-CDS-H-elongata_contig76089:372..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76089 373..464 +
1691679725.286749-CDS-H-elongata_contig76089:372..4641691679725.286749-CDS-H-elongata_contig76089:372..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76089 373..464 +
1622931165.9413671-CDS-H-elongata_contig76089:2282..23341622931165.9413671-CDS-H-elongata_contig76089:2282..2334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76089 2283..2334 +
1691679725.296091-CDS-H-elongata_contig76089:2282..23341691679725.296091-CDS-H-elongata_contig76089:2282..2334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76089 2283..2334 +
1622931165.9572449-CDS-H-elongata_contig76089:2350..25001622931165.9572449-CDS-H-elongata_contig76089:2350..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76089 2351..2500 +
1691679725.3067806-CDS-H-elongata_contig76089:2350..25001691679725.3067806-CDS-H-elongata_contig76089:2350..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76089 2351..2500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76089.15289.1

>prot_H-elongata_contig76089.15289.1 ID=prot_H-elongata_contig76089.15289.1|Name=mRNA_H-elongata_contig76089.15289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
ASGRTAQNFSLPLAAEGEGSVFPVDLSIARSYSATVIEIGVITSVSIFDI
NTHVGEFWFLIDATWMNNWVQFIMGKQEPPGPISNYNLYDQKEPTCTA
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mRNA from alignment at H-elongata_contig76089:373..2500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76089.15289.1 ID=mRNA_H-elongata_contig76089.15289.1|Name=mRNA_H-elongata_contig76089.15289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2128bp|location=Sequence derived from alignment at H-elongata_contig76089:373..2500+ (Himanthalia elongata Himel1 dioecious)
GCCTCTGGGAGGACTGCCCAGAACTTTTCTCTCCCCCTAGCCGCGGAGGG
GGAGGGAAGCGTCTTCCCGGTGGATCTGAGCATAGCGAGAAGGTAGATGA
GGGATATCGACTGGATATGAGGTGCTTTCAATGGCAGTATATGACATTGT
ATGACAGAGTATATGGCATTCAATGACAGTACTATAGGGTATATGATACT
GTAGTATATTGCAGTATATGATCATAAGTATGTTATATAGCAGTATATGG
CATTATATAGCAGTATATGGCATTATATAGGCAGTATATGGCATTATATG
GCAGTGTATGGCAGCAGCAGCAGTGACGCCGAGTTCGTTCTGCAGTTCTT
CGGTGACTTCTTGGTCGAAGACTTGCTCTCCTCATTTTGTCTTACGTATG
TCTGCCTTATATTATCCCTCTTGTGTGCTGATGCCTTGCCGTTCTCCTTG
TGTTGATTGATCATGATCAGTCATAGGTCTCGTGCATATCCATGCATAAC
CCTCCGTAGGTAGCAGCGACCACGTACAACCCTCTGTAGCCAGTATAATA
ATGTCATCATCCTCTAATAGTACTGTATAATAATATCATCACCCCATAGA
CTATGACTATAATATATGGTATAGCGCTTTATACGGTATTGAGATAATCT
GTTGAATCTACCGCATTTAATTGGGCGTATTATTGTAAGCTAGAGAGAAT
GTTTTATGACTAATGTCAGGCCAACTACTGCTCTGGACCTAAAACCTTCT
CTTGATACTAGTACCGGTAGTTTTTATTTCTTTTCGTTTTCGTCGTGGCG
TGGCTTACCATATAACTAGGTAGAGTCATCGTGTCATCGTACGATTGAAT
TACTACCATATACTATACTACTTGTAAGTATTATACTAGCGTGTATGTAC
CTCTTTACGATACTCCATTTATTCATTAGCTGTAACTACGAGGAGTAGCT
ATTTTTATAGTTTTCTGTAAACCTTGCGCTGGCGACCTTAACTTGCTTAG
CCTTTTCTCCCGTGATTGTTTAACATTACCACCTTCGTAGCGTATCCCTA
TAGTTTATAGTGTAGACATTCTAATAATTTGATACACAGAAAAGTATATA
CCGGGCCTTACCAAAATGTCTCATTCACCTATGCCTAGCAATACAGAAAA
TAACCTAATTAAAAACCTTTCCAACTTGCAGCTCACCCTCTAGACTCTGG
TTTGGTCATAGTCCCCACATGATGAATAATAATGTAGTAAGTGTACGGGA
TAGTGGTGGAATTCTCCCCGACATTGTACCGACGACCCGATGAGTTACTA
TTAATATTAATATTGGGGAATGAATACGATTAGTCGCATTTATTTGGCGA
TTTTGCGCTCAAAGGTATAGTAATGTACATATTCGAACCTGACGATAGTT
GGTCCCCTCTCTATGTTTTGTATTTATACGCTATACATGTCTCGTATGCC
ATCTATCAGCTACTGAGTGATCTGAACTGACGAAGCAACGATTGGAGTTG
GTGCTTTTGACCGCCCCTATCTCATCCTTTGACACGCCTCGCCTCGCTTC
GCTGTTTCTCTTATACCTATCTTCCTTTATCGTAGGAGGAAGCTGGAGGA
GGAANNNNNNNNNNTGGTCAAGAATTTTGTTAGGTAAATGAATGACCTAA
GGGTCTTTGGTTGCGCGAGGCGGCGTCTTCCTCTCACTGCTTCGAGGGTT
TTCCCTCAAACGAGGCGTGTTTCCCATATTTTCGAGTTTTGGGGGCGCGT
TTATTTTTAAGCGTAACTTTAATGGCGGCTCGCGGCAGAGGTCGGCGACT
CCGTGATGAACCATGAAACGTTTTAGACCTTACCCTTGCGGGTAGATAAG
AACCACGTCTAGAGGCAACCGTCTAGAGGCACGTCTAGAGGCACGCAGGC
AACCTTGAAGTTATTCGGCGACCGTCATCGAGATCGGAGTGATCACCTCC
GTCTCCATCTTCGTCACCTCGCAGGCAGGACATCAACACCCACGTGGGAG
AGTTCTGGTTCTTGATCGACGCAACCTGGATGAACAATTGGGTTCAGTTC
ATCATGGGCAAGCAGGAGCCGCCGGGGCCGATCTCGAACTACAACCTTTA
CGACCAGAAGGAACCCACCTGCACCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig76089:373..2500+

>mRNA_H-elongata_contig76089.15289.1 ID=mRNA_H-elongata_contig76089.15289.1|Name=mRNA_H-elongata_contig76089.15289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig76089:373..2500+ (Himanthalia elongata Himel1 dioecious)
GCCTCTGGGAGGACTGCCCAGAACTTTTCTCTCCCCCTAGCCGCGGAGGG
GGAGGGAAGCGTCTTCCCGGTGGATCTGAGCATAGCGAGAAGGCCTCTGG
GAGGACTGCCCAGAACTTTTCTCTCCCCCTAGCCGCGGAGGGGGAGGGAA
GCGTCTTCCCGGTGGATCTGAGCATAGCGAGAAGTTATTCGGCGACCGTC
ATCGAGATCGGAGTGATCACCTCCGTCTCCATCTTCTTATTCGGCGACCG
TCATCGAGATCGGAGTGATCACCTCCGTCTCCATCTTCGACATCAACACC
CACGTGGGAGAGTTCTGGTTCTTGATCGACGCAACCTGGATGAACAATTG
GGTTCAGTTCATCATGGGCAAGCAGGAGCCGCCGGGGCCGATCTCGAACT
ACAACCTTTACGACCAGAAGGAACCCACCTGCACCGCGGACATCAACACC
CACGTGGGAGAGTTCTGGTTCTTGATCGACGCAACCTGGATGAACAATTG
GGTTCAGTTCATCATGGGCAAGCAGGAGCCGCCGGGGCCGATCTCGAACT
ACAACCTTTACGACCAGAAGGAACCCACCTGCACCGCG
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