mRNA_H-elongata_contig75904.15278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75904.15278.1
Unique NamemRNA_H-elongata_contig75904.15278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig75904.15278.1 vs. uniprot
Match: A0A6H5K002_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K002_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.340e-22
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 2 
Query:   92 MEDLESQVFNLKLSIQEYEDRLAKLYQTEDRSKWKGPAVLLDDLQAADRDIERLEDTVEDLQHQLEKASGGG 307
            M+ + S+VFNLKL++QEYEDRLAKLYQTEDRSKW+GPA LL DL+AADR+++RLE+TV  L+ QL   SGGG
Sbjct:   21 MDAMGSEVFNLKLAVQEYEDRLAKLYQTEDRSKWRGPATLLTDLEAADREVDRLENTVSKLRDQLHGVSGGG 92
[Close]
BLAST of mRNA_H-elongata_contig75904.15278.1 vs. uniprot
Match: D8LIY9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY9_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.150e-21
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 2 
Query:   92 MEDLESQVFNLKLSIQEYEDRLAKLYQTEDRSKWKGPAVLLDDLQAADRDIERLEDTVEDLQHQLEKASGGG 307
            M+ + S+VFNLKL++QEYEDRLAKLYQTEDRSKW+GPA LL DL+AAD++++RLE+TV  L+ QL    GGG
Sbjct:   21 MDAMGSEVFNLKLAVQEYEDRLAKLYQTEDRSKWRGPATLLTDLEAADQEVDRLENTVSKLRDQLHGVRGGG 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75904.15278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K002_9PHAE1.340e-2269.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIY9_ECTSI2.150e-2166.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75904contigH-elongata_contig75904:165..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_002070.1
Exons2
Model size442
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75904.15278.1prot_H-elongata_contig75904.15278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75904 247..1268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.6391132-UTR-H-elongata_contig75904:164..2461622931164.6391132-UTR-H-elongata_contig75904:164..246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75904 165..246 +
1691679724.660009-UTR-H-elongata_contig75904:164..2461691679724.660009-UTR-H-elongata_contig75904:164..246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75904 165..246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.665822-CDS-H-elongata_contig75904:246..3781622931164.665822-CDS-H-elongata_contig75904:246..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75904 247..378 +
1691679724.6685054-CDS-H-elongata_contig75904:246..3781691679724.6685054-CDS-H-elongata_contig75904:246..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75904 247..378 +
1622931164.6845977-CDS-H-elongata_contig75904:1040..12681622931164.6845977-CDS-H-elongata_contig75904:1040..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75904 1041..1268 +
1691679724.6766999-CDS-H-elongata_contig75904:1040..12681691679724.6766999-CDS-H-elongata_contig75904:1040..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75904 1041..1268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75904.15278.1

>prot_H-elongata_contig75904.15278.1 ID=prot_H-elongata_contig75904.15278.1|Name=mRNA_H-elongata_contig75904.15278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MEVMEDLESQVFNLKLSIQEYEDRLAKLYQTEDRSKWKGPAVLLDDLQAA
DRDIERLEDTVEDLQHQLEKASGGGSGSGDGGKGVSGDGDGGGSGEENNR
DSGDDGDQHGRYEVNELRSQ
back to top

mRNA from alignment at H-elongata_contig75904:165..1268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75904.15278.1 ID=mRNA_H-elongata_contig75904.15278.1|Name=mRNA_H-elongata_contig75904.15278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-elongata_contig75904:165..1268+ (Himanthalia elongata Himel1 dioecious)
AGATAGGCGGCAGCTTACCACGCCAGGATACCTAGTTCTGAGAGAGAGAG
AGGGCCACGGTCGAGTCGAGGATTGAGGAACGATGGAAGTGATGGAAGAC
CTTGAGTCGCAGGTGTTCAACCTGAAGCTCTCCATCCAGGAATATGAGGA
CCGCCTCGCGAAGCTTTATCAGACTGAGGACAGGTCCAAGTGGAAGGGTC
CCGCGGTTCTTCTCGTGAGTTCTGTTACCATATGAGTTCGTGAATGTCTT
GTGCTGTGAACCGCAATGTGTGTGTTTTTTTGTGAGGGAGAGTCTCTTCC
ATTTTGTTTGTCATATATAAATTGGCTCCCTTTAAAACGATTGCTTCACG
CGCCCATCAGCTGAGGTTTATGGTAAAGACAATCCCAACACGCGCCACGG
GGGCAGTTTAACGGAGCGAGCGCTTCGTATCGAGCGATCGCTTATAATAG
TTATTTCGAGAGTCCGTCCGTCCGTTGAGTGGTTGGACCTGGCGGGGGAT
GTTGTCGCCATTTCGGATCATTGGGAGTACTCCACGTGTAGCGGGCTGTC
ACATAGATAATGTGACGGGTTGATCTTCGTGTTTCTTTGGTTGGCATTTG
ATAGGTTTGATAGGTTTAGGGTTTACTGAGTTTGATTGACTGATTGATTG
ATTGATTAATTGATTGTGTCGCGGTGGTTCTTCAGTTTCACGAACAACAC
GCTGTGATTGTGAGATTGTAAGATTGTAAACCATCAGGAACAACTCAAGT
GCTACCGCGTTTGCCTCAATGCCCAAGCACGGCTAGCAAAGCCCCAATGA
CCCGCCACTGACCGCGGGCTATGTAGGTGCGACTCACGCTCACGCAATCA
AGCGTGACTGTCTCTCTACCGATCAGGATGATCTCCAGGCGGCGGATCGG
GACATTGAGCGTCTGGAGGACACCGTCGAAGACTTGCAGCATCAGCTGGA
AAAGGCTAGCGGGGGTGGCAGTGGCAGTGGTGACGGAGGCAAGGGTGTTA
GTGGCGATGGCGATGGGGGCGGTAGCGGCGAGGAGAATAACCGCGATAGT
GGTGATGATGGTGATCAGCACGGTCGCTACGAGGTAAACGAGCTCCGTTC
CCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75904:165..1268+

>mRNA_H-elongata_contig75904.15278.1 ID=mRNA_H-elongata_contig75904.15278.1|Name=mRNA_H-elongata_contig75904.15278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig75904:165..1268+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGTGATGGAAGACCTTGAGTCGCAGGTGTTCAACCTGAAGCTCTC
CATCCAGGAATATGAGGACCGCCTCGCGAAGCTTTATCAGACTGAGGACA
GGTCCAAGTGGAAGGGTCCCGCGGTTCTTCTCATGGAAGTGATGGAAGAC
CTTGAGTCGCAGGTGTTCAACCTGAAGCTCTCCATCCAGGAATATGAGGA
CCGCCTCGCGAAGCTTTATCAGACTGAGGACAGGTCCAAGTGGAAGGGTC
CCGCGGTTCTTCTCGATGATCTCCAGGCGGCGGATCGGGACATTGAGCGT
CTGGAGGACACCGTCGAAGACTTGCAGCATCAGCTGGAAAAGGCTAGCGG
GGGTGGCAGTGGCAGTGGTGACGGAGGCAAGGGTGTTAGTGGCGATGGCG
ATGGGGGCGGTAGCGGCGAGGAGAATAACCGCGATAGTGGTGATGATGGT
GATCAGCACGGTCGCTACGAGGTAAACGAGCTCCGTTCCCAGGATGATCT
CCAGGCGGCGGATCGGGACATTGAGCGTCTGGAGGACACCGTCGAAGACT
TGCAGCATCAGCTGGAAAAGGCTAGCGGGGGTGGCAGTGGCAGTGGTGAC
GGAGGCAAGGGTGTTAGTGGCGATGGCGATGGGGGCGGTAGCGGCGAGGA
GAATAACCGCGATAGTGGTGATGATGGTGATCAGCACGGTCGCTACGAGG
TAAACGAGCTCCGTTCCCAG
back to top