mRNA_H-elongata_contig7587.15273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7587.15273.1
Unique NamemRNA_H-elongata_contig7587.15273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7587.15273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7587contigH-elongata_contig7587:8747..9752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size522
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7587.15273.1prot_H-elongata_contig7587.15273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7587 9019..9752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.2613134-UTR-H-elongata_contig7587:8746..89301622931164.2613134-UTR-H-elongata_contig7587:8746..8930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7587 8747..8930 +
1691679724.4837813-UTR-H-elongata_contig7587:8746..89301691679724.4837813-UTR-H-elongata_contig7587:8746..8930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7587 8747..8930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.2833457-CDS-H-elongata_contig7587:9018..92041622931164.2833457-CDS-H-elongata_contig7587:9018..9204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7587 9019..9204 +
1691679724.4984667-CDS-H-elongata_contig7587:9018..92041691679724.4984667-CDS-H-elongata_contig7587:9018..9204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7587 9019..9204 +
1622931164.2972424-CDS-H-elongata_contig7587:9370..94961622931164.2972424-CDS-H-elongata_contig7587:9370..9496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7587 9371..9496 +
1691679724.515922-CDS-H-elongata_contig7587:9370..94961691679724.515922-CDS-H-elongata_contig7587:9370..9496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7587 9371..9496 +
1622931164.312546-CDS-H-elongata_contig7587:9728..97521622931164.312546-CDS-H-elongata_contig7587:9728..9752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7587 9729..9752 +
1691679724.5292525-CDS-H-elongata_contig7587:9728..97521691679724.5292525-CDS-H-elongata_contig7587:9728..9752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7587 9729..9752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7587.15273.1

>prot_H-elongata_contig7587.15273.1 ID=prot_H-elongata_contig7587.15273.1|Name=mRNA_H-elongata_contig7587.15273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MPTPNFEDDYIISSSSERTNAHSLRSSSNIKTRLRIPRSLTERPVALVTP
LPLHVENVGRLKVAAEKTKRKTRIPSIQHMLKHLGSQVEETYGMAEEEAK
INRETSGKPLKP
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mRNA from alignment at H-elongata_contig7587:8747..9752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7587.15273.1 ID=mRNA_H-elongata_contig7587.15273.1|Name=mRNA_H-elongata_contig7587.15273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1006bp|location=Sequence derived from alignment at H-elongata_contig7587:8747..9752+ (Himanthalia elongata Himel1 dioecious)
TAAGCGGAAAGGCGAAGGCGATCATGACCGCTCATTCACCGCGATTGGTA
GATATTTCAGCGAAGGAAAAGGGCGCACCAACAGGGCTGGAAGATGATAG
GGAAAATGCGGCAACGGCTGCCAATATAGAGCCAGAGACGAAGGAAACGG
GGACAGATAACACGGAAATAACAGCCGGAGTTAAAGTGGATAAAGAGTCG
ATGACAGCAACAAAGGACAAGAAGGCGGCGACAGCAACGGCGGCGCCCAT
AGTGTCGATGATAGTGACCGATATGCCGACTCCTAACTTTGAGGACGACT
ACATCATTTCTTCGAGTAGCGAAAGAACTAACGCCCACTCTCTCAGGTCA
TCGAGTAATATAAAGACGCGACTCCGGATTCCACGATCACTGACGGAAAG
ACCCGTGGCGTTAGTAACTCCCTTGCCCCTCCACGTTGAAAACGTTGGAA
GATTGAAGGTGAGAAGCGGGTAACTTGATGGCACGCACTACAAAGGGATG
GATACAAGATATAAGTAGGACATTAACTTTCCCCCCGTACTACACCCGCA
AATCGTATGCTTCTGTGTAGAGCTCTGGGTAAACCTAGAACCTTAGCTTT
CTCTGACCTGTTGGTGTTTGGCAGGTGGCGGCGGAAAAAACGAAGAGGAA
AACAAGGATTCCGAGTATCCAGCACATGCTCAAGCACCTCGGATCTCAAG
TTGAGGAGACTTACGGAATGGCCGAAGAGGAGGCCAAAATAAACAGAGAA
GTGAGTACTCACTCGTACAGTACGCTCCACATCCTGGGTGGGAGTTTCTT
TTAATTATTGGCAGAGCCGCGAAAGCTCCACCTCATGTCTTGGGCAGTAT
TTGACGGTCAGTAACGACGAGAGACGGGAGTTCGAGGGCTAAATAGTTCT
TGGATTATATCGCACGAACTCCTTGACGTCGGTGTGATATCTTATGTAAG
CCATGTAGCATATTCGCTTTTCACGTTTGCAGACGAGTGGCAAGCCCTTG
AAGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig7587:8747..9752+

>mRNA_H-elongata_contig7587.15273.1 ID=mRNA_H-elongata_contig7587.15273.1|Name=mRNA_H-elongata_contig7587.15273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig7587:8747..9752+ (Himanthalia elongata Himel1 dioecious)
ATGCCGACTCCTAACTTTGAGGACGACTACATCATTTCTTCGAGTAGCGA
AAGAACTAACGCCCACTCTCTCAGGTCATCGAGTAATATAAAGACGCGAC
TCCGGATTCCACGATCACTGACGGAAAGACCCGTGGCGTTAGTAACTCCC
TTGCCCCTCCACGTTGAAAACGTTGGAAGATTGAAGATGCCGACTCCTAA
CTTTGAGGACGACTACATCATTTCTTCGAGTAGCGAAAGAACTAACGCCC
ACTCTCTCAGGTCATCGAGTAATATAAAGACGCGACTCCGGATTCCACGA
TCACTGACGGAAAGACCCGTGGCGTTAGTAACTCCCTTGCCCCTCCACGT
TGAAAACGTTGGAAGATTGAAGGTGGCGGCGGAAAAAACGAAGAGGAAAA
CAAGGATTCCGAGTATCCAGCACATGCTCAAGCACCTCGGATCTCAAGTT
GAGGAGACTTACGGAATGGCCGAAGAGGAGGCCAAAATAAACAGAGAAGT
GGCGGCGGAAAAAACGAAGAGGAAAACAAGGATTCCGAGTATCCAGCACA
TGCTCAAGCACCTCGGATCTCAAGTTGAGGAGACTTACGGAATGGCCGAA
GAGGAGGCCAAAATAAACAGAGAAACGAGTGGCAAGCCCTTGAAGCCTAC
GAGTGGCAAGCCCTTGAAGCCT
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