mRNA_H-elongata_contig75843.15270.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6A4BX04_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BX04_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.730e-16 Identity = 49/127 (38.58%), Postives = 68/127 (53.54%), Query Frame = 1
Query: 40 GRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLNPDIE 420
G P Y+ +L I FD +R L +PPARV PMR++LK GA K K R YPPE +++E + L E G +Y NP + A + K GYR AD+ P+N Q + + G M NP ++
Sbjct: 134 GFPAEYLGELHRIATR--FDLWRAQLGRDPPARVPPMRIRLKPGAK--PYKCKARKYPPEVRHFMEEFNQKLEELGWIYENPNSRWACPALPVRKSGSDGYRQTADYKPVNIQVDGIAGVMPNPQVD 256
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6G0WYM7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYM7_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.930e-15 Identity = 53/136 (38.97%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 1 EALVSALRAAVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLN 408
E L + AVE G P G V +L I L D FR +PP +VAP++V+LK+GA VK R YPP +L++H L G++Y N +A A+ PK + YR+ D PIN E MP PM N
Sbjct: 42 EVLEQKVAEAVEQGLPPGQVDELRRI-LRAYQDVFRLDFGKDPPVKVAPLKVRLKEGA--VPVKVGLRRYPPAHMDYLRQHVAELEAAGLIYRNNRATWAAAPRIVPKKNPGEYRMTIDSRPINAWTEAMPWPMPN 174
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6G0JSB0_9STRA (Reverse transcriptase domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JSB0_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.740e-15 Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 40 GRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLNPDIE 420
G P Y+ +L I FD +R L +PPARV PMR++LK + K K R YPPE +++E + L E G +Y NP + A + K GYR AD+ P+N Q + + G M NP ++
Sbjct: 134 GFPAEYLGELHRIATR--FDLWRAQLDRDPPARVPPMRIRLKP--ETKPYKCKARKYPPEVRHFMEEFNQKLEELGWIYENPNSRWACPALPVRKSGSDGYRQTADYKPVNIQVDGIAGVMPNPQVD 256
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6G0MKE3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MKE3_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.860e-15 Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 40 GRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLNPDIE 420
G P Y+ +L I FD +R L +PPARV PMR++LK + K K R YPPE +++E + L E G +Y NP + A + K GYR AD+ P+N Q + + G M NP ++
Sbjct: 134 GFPAEYLGELHRIATR--FDLWRAQLDRDPPARVPPMRIRLKP--ETKPYKCKARKYPPEVRHFMEEFNQKLEELGWIYENPNSRWACPALPVRKSGSDGYRQTADYKPVNIQVDGIAGVMPNPQVD 256
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6G0WP68_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP68_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 6.560e-15 Identity = 52/136 (38.24%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 1 EALVSALRAAVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLN 408
E L + AVE G P G V +L I L D FR +PP +VAP++V+LK+GA VK R YPP +L++H L G++Y N +A A+ PK + YR+ + PIN E MP PM N
Sbjct: 543 EVLEQKVAEAVEQGLPPGQVDELRRI-LRAYQDVFRLDFGKDPPVKVAPLKVRLKEGA--VPVKVGLRRYPPAHMDYLRQHVAELEAAGLIYRNNRATWAAAPRIVPKKNPGEYRMTIESRPINAWTETMPWPMPN 675
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: H3H5L7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5L7_PHYRM) HSP 1 Score: 78.6 bits (192), Expect = 3.150e-14 Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 1
Query: 4 ALVSALRAAVETGRPEGYVAK----LEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLNPDIE 420
A+ AL ++ R G +K L+E++ D FR + +PP RV P+RV LK+GA VKAK R YPP+ +L+EH E L G+V N ++ AS K YR+ D +N E MP PM PDIE
Sbjct: 613 AVQEALELKIQEARANGLTSKEGDDLQELLFRH-IDVFRLSFGDDPPVRVPPLRVHLKEGA--RPVKAKARRYPPDHKRYLEEHIEELVRHGLVKKNHRSRWASAPRIVAKRKPGEYRMTVDTRAVNALTEPMPWPM--PDIE 750
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A2P4Y985_9STRA (Retroelement n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y985_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.050e-13 Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 4 ALVSALRAAVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPG--PMLNPDIE 420
A+ + ++ A++ G P G + +L IV +D +R L +PPA+V PMR+++K G +AK R Y PE +L+ + L G VY NP A + K G +R D+ P N Q E + G P L+ D+E
Sbjct: 343 AVEAMIQLALDEGFPAGKIERLRTIVY--AYDVWRLTLGSDPPAKVEPMRIRMKAGCK--PFRAKARKYAPEYQAFLESFNDKLVSLGWVYENPSRRRACAALLVRKSGGSDFRQTVDYKPSNSQTEPIAGIMPNLHVDLE 479
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6G0M9I6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M9I6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.560e-13 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 19 LRAAVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPGPMLN 408
+ +AV+ G P+ V +L I +D +R L +PPARV PM+++LK GA + KPR YPPE +L + L G VY N ++ A + K G+ +R AD+ P+NG E + G M N
Sbjct: 52 IESAVQKGFPKESVPRLRRIATR--YDIWRLRLGDDPPARVPPMKIRLKPGAK--PYRCKPRKYPPEVRRFLDDFNAELVRLGWVYENTESRWACPALPVRKTGGE-FRQTADYKPVNGDMEAIVGVMPN 176
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6G0Q2T5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q2T5_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.260e-13 Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 1
Query: 19 LRAAVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPG--PMLNPDIE 420
+ +AV+ G P+ V +L I +D +R L +PPARV PM+++LK GA + KPR YPPE +L + L G VY N ++ A + K G+ +R AD+ P+NG E + G P L D+E
Sbjct: 133 IESAVQKGFPKESVPRLRRIATR--YDIWRLRLGDDPPARVPPMKIRLKPGAK--PYRCKPRKYPPEVRRFLDDFNAELVRLGWVYENTESRWACPALPVRKTGGE-FRQTADYKPVNGDMEAIVGVMPNLQTDLE 263
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Match: A0A6A3IIE0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IIE0_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.550e-13 Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 28 AVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMRVKLKQGADLTQVKAKPRVYPPEKSVWLKEHFELLCETGMVYPNPQAVCASVTMAFPKGSGKGYRLVADFSPINGQCELMPG--PMLNPDIE 420
A+ G P Y +L I L FD FR L +PPA+V P+R++LK GA + KA R YPPE ++++ L E G VY N ++ A + KG G+ +R AD+ P+N E + G P L D+E
Sbjct: 107 AIADGFPREYKKELTRIALR--FDLFRSRLGADPPAKVPPVRIRLKPGAKPYRCKA--RKYPPEVRRFMEDFNAKLVELGWVYENRESRWACPALPVRKGGGE-FRQTADYKPMNTLVEAIVGIMPDLQTDLE 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75843.15270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75843.15270.1 >prot_H-elongata_contig75843.15270.1 ID=prot_H-elongata_contig75843.15270.1|Name=mRNA_H-elongata_contig75843.15270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp EALVSALRAAVETGRPEGYVAKLEEIVLGECFDGFRRALTGEPPARVAPMback to top mRNA from alignment at H-elongata_contig75843:626..1045- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75843.15270.1 ID=mRNA_H-elongata_contig75843.15270.1|Name=mRNA_H-elongata_contig75843.15270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig75843:626..1045- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75843:626..1045- >mRNA_H-elongata_contig75843.15270.1 ID=mRNA_H-elongata_contig75843.15270.1|Name=mRNA_H-elongata_contig75843.15270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig75843:626..1045- (Himanthalia elongata Himel1 dioecious)back to top |