mRNA_H-elongata_contig75708.15262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75708.15262.1
Unique NamemRNA_H-elongata_contig75708.15262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: D7FNG2_ECTSI (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG2_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.520e-24
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    7 YTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLRSR 189
            YTRAYINHLGRAGELLGG+L+SQHNVFFMNELM SIR AI +G  L EEEDKWLAPGLR+R
Sbjct:  410 YTRAYINHLGRAGELLGGMLVSQHNVFFMNELMTSIRTAIAEGR-LAEEEDKWLAPGLRAR 469          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A836CCU6_9STRA (tRNA-guanine(15) transglycosylase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCU6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.320e-16
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 YTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLRS 186
            Y+RAY++H  RAGEL+GG LL+QHNV+ MN LMA +R AI  G  LE+ ED WLAPGLRS
Sbjct:  436 YSRAYLHHCVRAGELVGGALLTQHNVWTMNALMADVRAAIAAGTPLEQVEDHWLAPGLRS 495          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A0G4I7T1_9ALVE (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I7T1_9ALVE)

HSP 1 Score: 80.1 bits (196), Expect = 4.580e-16
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLRSR 189
            R+Y+RAY++H  ++GEL+GG L++QHNV+FMNELMASIR AIR+ N LEEE+ KW+ P L  +
Sbjct:  465 RNYSRAYLHHCFKSGELVGGSLVAQHNVYFMNELMASIRAAIRE-NRLEEEKAKWVHPDLEQK 526          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A0G4EBX0_VITBC (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EBX0_VITBC)

HSP 1 Score: 73.6 bits (179), Expect = 8.780e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGL 180
            R+++RAY++HL +AGE LGG L+S HNVFFMN LM  IR AIR G  L+EE  KW+ P L
Sbjct:  372 RNFSRAYLHHLLKAGEQLGGTLVSLHNVFFMNRLMRDIRSAIRSGT-LDEERSKWVHPAL 430          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A6H5KQ68_9PHAE (TGT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ68_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.110e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   61 ILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLRSR 189
            +L+SQHNVFFMNELM SIR AI +G  L EEE+KWLAPGLR+R
Sbjct:    1 MLVSQHNVFFMNELMTSIRTAIAEGR-LAEEENKWLAPGLRAR 42          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A0F7U7R1_NEOCL (Queuine tRNA-ribosyltransferase, putative n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=A0A0F7U7R1_NEOCL)

HSP 1 Score: 68.2 bits (165), Expect = 7.350e-12
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLRS 186
            R+ +RAY+++L +AGE LGG+L++ HN++ MN LM  IR+AI + NELEEEE+KW+ P  R+
Sbjct:  548 RTASRAYLHYLLKAGEQLGGVLVTVHNIYTMNRLMGCIRQAIVE-NELEEEEEKWIHPLTRN 608          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A0F7UVI4_TOXGV (Queuine tRNA-ribosyltransferase, putative n=1 Tax=Toxoplasma gondii (strain ATCC 50861 / VEG) TaxID=432359 RepID=A0A0F7UVI4_TOXGV)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-11
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLR 183
            R+ +RAY+++L +AGE LGG+L++ HN+F MN LM SIR+AI   N L+EEE KW+ P +R
Sbjct:  529 RTASRAYLHYLLKAGEQLGGVLVTVHNIFTMNRLMGSIRQAILQ-NRLDEEEGKWIHPLMR 588          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: S7UIY4_TOXGG (Queuine tRNA ribosyl transferase n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S7UIY4_TOXGG)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLR 183
            R+ +RAY+++L +AGE LGG+L++ HN+F MN LM SIR+AI   N L+EEE KW+ P +R
Sbjct:  888 RTASRAYLHYLLKAGEQLGGVLVTVHNIFTMNRLMGSIRQAILQ-NRLDEEEGKWIHPLMR 947          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: A0A7S2XVJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.840e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   10 TRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLAPGLRSR 189
            TRAY++HL +A E LGG LL+ HNV FMN +M  IR  I++G  L+E E +W+ P L+ +
Sbjct:   69 TRAYLHHLFKAKETLGGTLLAHHNVCFMNRMMEGIRNGIKEGT-LDEVEKEWIHPMLKEK 127          
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Match: Q4E955_9RICK (Queuine tRNA-ribosyltransferase (Fragment) n=1 Tax=Wolbachia endosymbiont of Drosophila ananassae TaxID=307502 RepID=Q4E955_9RICK)

HSP 1 Score: 61.6 bits (148), Expect = 4.020e-10
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEEEEDKWLA 171
            R ++RAYI+HL +A ELL   L++ HN+FFMN+LMASIR+AI D + L++E++ W++
Sbjct:  128 RKHSRAYIHHLLKAKELLAYTLVTIHNIFFMNKLMASIRQAILD-DRLDQEKNNWIS 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75708.15262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG2_ECTSI3.520e-2483.61Queuine tRNA-ribosyltransferase catalytic subunit ... [more]
A0A836CCU6_9STRA1.320e-1665.00tRNA-guanine(15) transglycosylase-like protein n=1... [more]
A0A0G4I7T1_9ALVE4.580e-1660.32Queuine tRNA-ribosyltransferase catalytic subunit ... [more]
A0A0G4EBX0_VITBC8.780e-1460.00Queuine tRNA-ribosyltransferase catalytic subunit ... [more]
A0A6H5KQ68_9PHAE4.110e-1274.42TGT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0F7U7R1_NEOCL7.350e-1253.23Queuine tRNA-ribosyltransferase, putative n=1 Tax=... [more]
A0A0F7UVI4_TOXGV1.370e-1154.10Queuine tRNA-ribosyltransferase, putative n=1 Tax=... [more]
S7UIY4_TOXGG1.380e-1154.10Queuine tRNA ribosyl transferase n=15 Tax=Toxoplas... [more]
A0A7S2XVJ8_9STRA6.840e-1150.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
Q4E955_9RICK4.020e-1052.63Queuine tRNA-ribosyltransferase (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75708contigH-elongata_contig75708:232..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7FNG2
KEGG rclassRC00063
KEGG koko:K00773
KEGG ReactionR03789,R10209
EggNOG free text desc.tRNA-guanine transglycosylation
EggNOG OGsCOG0343@1,KOG3908@2759
EC2.4.2.29
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-guanine(15) transglycosylase-like
Ec32 orthologEc-01_005570.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.0309622-CDS-H-elongata_contig75708:231..4201622931163.0309622-CDS-H-elongata_contig75708:231..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75708 232..420 +
1691679724.0570323-CDS-H-elongata_contig75708:231..4201691679724.0570323-CDS-H-elongata_contig75708:231..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75708 232..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75708.15262.1prot_H-elongata_contig75708.15262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75708 232..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75708.15262.1

>prot_H-elongata_contig75708.15262.1 ID=prot_H-elongata_contig75708.15262.1|Name=mRNA_H-elongata_contig75708.15262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
RSYTRAYINHLGRAGELLGGILLSQHNVFFMNELMASIRRAIRDGNELEE
EEDKWLAPGLRSR
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mRNA from alignment at H-elongata_contig75708:232..420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75708.15262.1 ID=mRNA_H-elongata_contig75708.15262.1|Name=mRNA_H-elongata_contig75708.15262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig75708:232..420+ (Himanthalia elongata Himel1 dioecious)
CGCAGCTACACCCGGGCCTATATCAACCACCTGGGGAGGGCTGGCGAGCT GCTAGGAGGCATCCTCTTGTCCCAGCACAACGTTTTTTTCATGAACGAGC TGATGGCGTCGATCCGCCGGGCGATCCGGGACGGTAATGAGCTCGAGGAG GAGGAGGACAAATGGCTTGCTCCTGGCCTCAGATCGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig75708:232..420+

>mRNA_H-elongata_contig75708.15262.1 ID=mRNA_H-elongata_contig75708.15262.1|Name=mRNA_H-elongata_contig75708.15262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig75708:232..420+ (Himanthalia elongata Himel1 dioecious)
CGCAGCTACACCCGGGCCTATATCAACCACCTGGGGAGGGCTGGCGAGCT
GCTAGGAGGCATCCTCTTGTCCCAGCACAACGTTTTTTTCATGAACGAGC
TGATGGCGTCGATCCGCCGGGCGATCCGGGACGGTAATGAGCTCGAGGAG
GAGGAGGACAAATGGCTTGCTCCTGGCCTCAGATCGAGACGCAGCTACAC
CCGGGCCTATATCAACCACCTGGGGAGGGCTGGCGAGCTGCTAGGAGGCA
TCCTCTTGTCCCAGCACAACGTTTTTTTCATGAACGAGCTGATGGCGTCG
ATCCGCCGGGCGATCCGGGACGGTAATGAGCTCGAGGAGGAGGAGGACAA
ATGGCTTGCTCCTGGCCTCAGATCGAGA
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