mRNA_H-elongata_contig75669.15254.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: D7FNB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB1_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.200e-29 Identity = 74/120 (61.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query: 1 SLERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVA---DPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
S+ R+EGLAGLWSGTAPSLVLVSNPIIQFV YE LKQA G R R+ + DPR S AG SR GAG + GL SHEAFLLGA AKTISTL+TYPLQ A+ K R G
Sbjct: 155 SIGRHEGLAGLWSGTAPSLVLVSNPIIQFVVYETLKQALGRRHSHRNGEARRIITQPPDPR--------SAAGGGSRGGAGRPSVGLRSHEAFLLGATAKTISTLVTYPLQLAQAKLRAG 266
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A835YS89_9STRA (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS89_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.870e-15 Identity = 46/112 (41.07%), Postives = 62/112 (55.36%), Query Frame = 1
Query: 10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGR 345
+ +GLAGLW+GT PSLVLV+NPIIQFVAY+ LK+ R R + + L +HEAF+LGA+AK ++T++TYPLQ A+ K R
Sbjct: 43 KEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQ----------------------------LRAHEAFVLGAIAKALATVLTYPLQLAQSKMR 126
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: UPI001ED8A215 (peroxisomal membrane protein PMP34 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A215) HSP 1 Score: 70.1 bits (170), Expect = 9.080e-12 Identity = 47/111 (42.34%), Postives = 57/111 (51.35%), Query Frame = 1
Query: 19 GLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
G+ LW+GT PSL+LVSNP IQF AYEALK RH P P SG + PS AFLLGA+AK ++TLITYP+Q + + R G
Sbjct: 168 GIPALWAGTVPSLILVSNPAIQFAAYEALK---------RHLLNP-----PGASGRLEQPSAL------------------VAFLLGAIAKAVATLITYPIQLIQTRLRHG 246
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: UPI000626BF98 (peroxisomal membrane protein PMP34 n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000626BF98) HSP 1 Score: 67.4 bits (163), Expect = 8.120e-11 Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
+ EG+ LW+GT PSL+LVSNP IQF+ YEA+K+ G + C P P+ FL+GA+AKT++T +TYPLQ A+ K R G
Sbjct: 162 KTEGIQKLWAGTLPSLLLVSNPAIQFMTYEAIKRRIG---------KICGATAP---------------------------PAIVFFLIGAVAKTVATTVTYPLQLAQTKLRHG 239
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A2R5GLV3_9STRA (Mitochondrial substrate carrier family protein Q n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLV3_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.120e-10 Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 4 LERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVK 339
+ +G A LWSG PSL+LVSNP +QF +YE LK A RL+ + D G V+ +T S A G L S E LLGA AK I+T++TYPLQ A+ +
Sbjct: 209 IAERDGAASLWSGLGPSLILVSNPSVQFASYEWLKHALLKFRLKMEPT----TRDLMHIGEVMEGATEDVVSEAVLG---TELSSIEYLLLGATAKLIATVVTYPLQVAQTR 313
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: H9JQJ4_BOMMO (Uncharacterized protein n=1 Tax=Bombyx mori TaxID=7091 RepID=H9JQJ4_BOMMO) HSP 1 Score: 64.7 bits (156), Expect = 4.110e-10 Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1
Query: 4 LERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
L R EG GLWSGT PSL+LVSNP IQF+ YE+LK+ ++ G ++ +FL+GA AK+++T++TYPLQ + + R G
Sbjct: 98 LARTEGAKGLWSGTVPSLLLVSNPAIQFMVYESLKRTFMSQ---------------------------------------GSFHTYTSFLVGATAKSVATILTYPLQVIQSRLRAG 174
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A8K0KL56_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KL56_LADFU) HSP 1 Score: 65.1 bits (157), Expect = 4.550e-10 Identity = 41/102 (40.20%), Postives = 51/102 (50.00%), Query Frame = 1
Query: 19 GLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQ 324
G+AGLW+GT PSL+LVSNP IQF YE LK+ N P S + PS AF+LGAMAK I+T++TYP+Q
Sbjct: 168 GIAGLWAGTVPSLLLVSNPAIQFATYEFLKRRLLN---------------PGLSARIEQPSAL------------------TAFILGAMAKAIATVVTYPVQ 236
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A7R9ZFS4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZFS4_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 6.380e-10 Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKV 336
+ EG LWSGT SLVLVSNP IQF YE LK + R +R R +G++ G L + EAF++GA+AK ++T+ITYPLQ A+V
Sbjct: 6 KKEGFGQLWSGTWASLVLVSNPAIQFFLYEQLKIYLVSSRFKRR----------RETGAL----------------GLLSLSAVEAFVVGAVAKGVATIITYPLQLAQV 88
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A6J2KLI1_BOMMA (peroxisomal membrane protein PMP34-like n=5 Tax=Bombyx TaxID=7090 RepID=A0A6J2KLI1_BOMMA) HSP 1 Score: 64.7 bits (156), Expect = 6.430e-10 Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1
Query: 4 LERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
L R EG GLWSGT PSL+LVSNP IQF+ YE+LK+ ++ G ++ +FL+GA AK+++T++TYPLQ + + R G
Sbjct: 145 LARTEGAKGLWSGTVPSLLLVSNPAIQFMVYESLKRTFMSQ---------------------------------------GSFHTYTSFLVGATAKSVATILTYPLQVIQSRLRAG 221
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: UPI001F03CB0A (peroxisomal membrane protein PMP34-like isoform X1 n=3 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03CB0A) HSP 1 Score: 64.7 bits (156), Expect = 8.510e-10 Identity = 44/115 (38.26%), Postives = 55/115 (47.83%), Query Frame = 1
Query: 10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAG-GLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
R EGL GLWSGT SLVL SNP IQF YE +K+ GAG LPS + F++GA+AKT++T++TYP Q A+ K R G
Sbjct: 187 RTEGLRGLWSGTRASLVLTSNPAIQFTVYETIKRYVR---------------------------------------GAGKDLPSWKYFMIGAIAKTMATILTYPCQVAQCKQRTG 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75669.15254.1 >prot_H-elongata_contig75669.15254.1 ID=prot_H-elongata_contig75669.15254.1|Name=mRNA_H-elongata_contig75669.15254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp SLERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRback to top mRNA from alignment at H-elongata_contig75669:2654..3016- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75669.15254.1 ID=mRNA_H-elongata_contig75669.15254.1|Name=mRNA_H-elongata_contig75669.15254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig75669:2654..3016- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75669:2654..3016- >mRNA_H-elongata_contig75669.15254.1 ID=mRNA_H-elongata_contig75669.15254.1|Name=mRNA_H-elongata_contig75669.15254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig75669:2654..3016- (Himanthalia elongata Himel1 dioecious)back to top |