mRNA_H-elongata_contig75663.15252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75663.15252.1
Unique NamemRNA_H-elongata_contig75663.15252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75663.15252.1 vs. uniprot
Match: A0A6H5JQN5_9PHAE (Fe-ADH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.350e-12
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 PLLGPIPLVAIPVVAGVGSEVTPMATILDDDDPLEPTKAS 120
            PLLGP+PLVAIP+VAG+GSEVTP+ATILDD DPLEP K +
Sbjct:   62 PLLGPVPLVAIPLVAGIGSEVTPVATILDDRDPLEPVKVT 101
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BLAST of mRNA_H-elongata_contig75663.15252.1 vs. uniprot
Match: D7FRP4_ECTSI (Similar to Iron-containing Alcohol Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-11
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 PLLGPIPLVAIPVVAGVGSEVTPMATILDDDDPLEPTKAS 120
            PLLGP+PLVAIP+VAG+GSEVTP+ATI+DD DPLEP K +
Sbjct:  236 PLLGPVPLVAIPLVAGIGSEVTPVATIMDDHDPLEPVKVT 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75663.15252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQN5_9PHAE9.350e-1280.00Fe-ADH domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FRP4_ECTSI1.280e-1177.50Similar to Iron-containing Alcohol Dehydrogenase n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75663contigH-elongata_contig75663:2703..2843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.082779-CDS-H-elongata_contig75663:2702..28431622931162.082779-CDS-H-elongata_contig75663:2702..2843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75663 2703..2843 -
1691679723.6622117-CDS-H-elongata_contig75663:2702..28431691679723.6622117-CDS-H-elongata_contig75663:2702..2843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75663 2703..2843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75663.15252.1prot_H-elongata_contig75663.15252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75663 2703..2843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75663.15252.1

>prot_H-elongata_contig75663.15252.1 ID=prot_H-elongata_contig75663.15252.1|Name=mRNA_H-elongata_contig75663.15252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
PLLGPIPLVAIPVVAGVGSEVTPMATILDDDDPLEPTKASKHARKI*
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mRNA from alignment at H-elongata_contig75663:2703..2843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75663.15252.1 ID=mRNA_H-elongata_contig75663.15252.1|Name=mRNA_H-elongata_contig75663.15252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig75663:2703..2843- (Himanthalia elongata Himel1 dioecious)
CCGCTGCTGGGTCCCATTCCCCTCGTCGCCATTCCGGTAGTCGCTGGCGT
GGGATCAGAGGTCACTCCCATGGCGACGATCCTCGACGACGATGATCCGC
TGGAACCTACGAAGGCGAGCAAGCACGCACGTAAAATCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig75663:2703..2843-

>mRNA_H-elongata_contig75663.15252.1 ID=mRNA_H-elongata_contig75663.15252.1|Name=mRNA_H-elongata_contig75663.15252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig75663:2703..2843- (Himanthalia elongata Himel1 dioecious)
CCGCTGCTGGGTCCCATTCCCCTCGTCGCCATTCCGGTAGTCGCTGGCGT
GGGATCAGAGGTCACTCCCATGGCGACGATCCTCGACGACGATGATCCGC
TGGAACCTACGAAGGCGAGCAAGCACGCACGTAAAATCTAGCCGCTGCTG
GGTCCCATTCCCCTCGTCGCCATTCCGGTAGTCGCTGGCGTGGGATCAGA
GGTCACTCCCATGGCGACGATCCTCGACGACGATGATCCGCTGGAACCTA
CGAAGGCGAGCAAGCACGCACGTAAAATCTAG
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