mRNA_H-elongata_contig75663.15251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75663.15251.1
Unique NamemRNA_H-elongata_contig75663.15251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig75663.15251.1 vs. uniprot
Match: A0A6H5JQN5_9PHAE (Fe-ADH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.680e-27
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 VTVGFHSSAAAMPAPFMALLEPRLMMRVPLETTWPRAFVALAGCIEGYVTGRGFVPDLLR 180
            VTVGFH SAAAMPAPFMA++EPRLMMRVPLE TWP AFVALAGC+E YV GRGFVPDL+R
Sbjct:  100 VTVGFHDSAAAMPAPFMAIVEPRLMMRVPLEITWPGAFVALAGCLESYVAGRGFVPDLMR 159
[Close]
BLAST of mRNA_H-elongata_contig75663.15251.1 vs. uniprot
Match: D7FRP4_ECTSI (Similar to Iron-containing Alcohol Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP4_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.780e-27
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 VTVGFHSSAAAMPAPFMALLEPRLMMRVPLETTWPRAFVALAGCIEGYVTGRGFVPDLLRCAA 189
            VTVGFH SAAAMPAPFMA++EPRLMMRVPLE TWP AFVALAGC+E YV GRGFVPDL+R ++
Sbjct:  274 VTVGFHDSAAAMPAPFMAIVEPRLMMRVPLEITWPGAFVALAGCLESYVAGRGFVPDLMRASS 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75663.15251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQN5_9PHAE1.680e-2785.00Fe-ADH domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FRP4_ECTSI1.780e-2780.95Similar to Iron-containing Alcohol Dehydrogenase n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75663contigH-elongata_contig75663:2204..2392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.041752-CDS-H-elongata_contig75663:2203..23921622931162.041752-CDS-H-elongata_contig75663:2203..2392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75663 2204..2392 -
1691679723.652895-CDS-H-elongata_contig75663:2203..23921691679723.652895-CDS-H-elongata_contig75663:2203..2392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75663 2204..2392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75663.15251.1prot_H-elongata_contig75663.15251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75663 2204..2392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75663.15251.1

>prot_H-elongata_contig75663.15251.1 ID=prot_H-elongata_contig75663.15251.1|Name=mRNA_H-elongata_contig75663.15251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
VTVGFHSSAAAMPAPFMALLEPRLMMRVPLETTWPRAFVALAGCIEGYVT
GRGFVPDLLRCAA
back to top

mRNA from alignment at H-elongata_contig75663:2204..2392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75663.15251.1 ID=mRNA_H-elongata_contig75663.15251.1|Name=mRNA_H-elongata_contig75663.15251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig75663:2204..2392- (Himanthalia elongata Himel1 dioecious)
GTCACGGTGGGTTTCCACAGTAGTGCAGCGGCGATGCCTGCACCCTTTAT
GGCCCTGTTGGAACCCAGGCTGATGATGAGAGTGCCACTGGAGACGACTT
GGCCCAGGGCGTTCGTGGCGCTCGCCGGTTGCATCGAGGGATACGTCACC
GGGCGGGGGTTTGTTCCCGACTTGCTGAGGTGCGCCGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75663:2204..2392-

>mRNA_H-elongata_contig75663.15251.1 ID=mRNA_H-elongata_contig75663.15251.1|Name=mRNA_H-elongata_contig75663.15251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig75663:2204..2392- (Himanthalia elongata Himel1 dioecious)
GTCACGGTGGGTTTCCACAGTAGTGCAGCGGCGATGCCTGCACCCTTTAT
GGCCCTGTTGGAACCCAGGCTGATGATGAGAGTGCCACTGGAGACGACTT
GGCCCAGGGCGTTCGTGGCGCTCGCCGGTTGCATCGAGGGATACGTCACC
GGGCGGGGGTTTGTTCCCGACTTGCTGAGGTGCGCCGCGGTCACGGTGGG
TTTCCACAGTAGTGCAGCGGCGATGCCTGCACCCTTTATGGCCCTGTTGG
AACCCAGGCTGATGATGAGAGTGCCACTGGAGACGACTTGGCCCAGGGCG
TTCGTGGCGCTCGCCGGTTGCATCGAGGGATACGTCACCGGGCGGGGGTT
TGTTCCCGACTTGCTGAGGTGCGCCGCG
back to top