mRNA_H-elongata_contig75654.15247.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75654.15247.1
Unique NamemRNA_H-elongata_contig75654.15247.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: D7FLD0_ECTSI (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD0_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 5.320e-95
Identity = 142/178 (79.78%), Postives = 154/178 (86.52%), Query Frame = 1
Query:   10 TGGYGSTEAMRKMISDLEAWENKTGNG---------------RNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            +GGYGS EAM KM++DLE WE +TG+                R ANRV+YFAIPPNVFLDTAASIK+VG+S+TGFTRLVVEKPFGHDY+SALKLT DL AHFDESYVYRIDHYLGKEMTQNLL+LRFSNTMFEPIWNRD +QSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV
Sbjct:   98 SGGYGSVEAMSKMVADLEVWEGQTGDASLIVDPESKTVKHGHRAANRVYYFAIPPNVFLDTAASIKQVGLSATGFTRLVVEKPFGHDYDSALKLTDDLGAHFDESYVYRIDHYLGKEMTQNLLVLRFSNTMFEPIWNRDSVQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 275          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A836CPA6_9STRA (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPA6_9STRA)

HSP 1 Score: 249 bits (635), Expect = 5.220e-78
Identity = 116/163 (71.17%), Postives = 141/163 (86.50%), Query Frame = 1
Query:   10 TGGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            +GGY   EAM+ MI D+E WE ++  G+ ANR+FYFA+PP+VFL TAA+IK+V MS +G++RL+VEKPFGHD ESA KLT DL A +DE+Y+YRIDHYLGKEM QNLL++RFSNT+FEP+W+RD+I SVTFTFKE+FGTEGRGGYFD  GIIRDVIQNHLMQV
Sbjct:  120 SGGYDDHEAMKAMIKDVEKWEAESATGK-ANRIFYFAVPPSVFLPTAAAIKDVAMSPSGWSRLIVEKPFGHDLESAKKLTDDLGALYDENYLYRIDHYLGKEMVQNLLVMRFSNTLFEPLWSRDHIASVTFTFKEDFGTEGRGGYFDSNGIIRDVIQNHLMQV 281          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A7S3ZDH1_9EUKA (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZDH1_9EUKA)

HSP 1 Score: 215 bits (548), Expect = 2.610e-66
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 1
Query:   13 GGYGSTEAMRKMISDLEAWENKT-GNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQ 495
            G YGS E + K++ +   +E K  GN +  NR+FYFAIPP+V+ D AA+I EVG+S  GFTR+++EKPFGHD +SA +L+K L  HF E Y++RIDHYLGKEM QN+L+LRF N  FEP+WN  YI  V  +FKE FGTEGRGGYFD  GIIRDV+QNHL+Q
Sbjct:  102 GQYGSAEDLGKVVEEASKFEAKAKGNSKKVNRLFYFAIPPSVYADVAAAIHEVGISKEGFTRMIIEKPFGHDLDSAKELSKKLEKHFTEEYIFRIDHYLGKEMVQNMLVLRFGNVFFEPLWNNKYIDCVYISFKEPFGTEGRGGYFDNNGIIRDVMQNHLLQ 263          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A7S2WI22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WI22_9STRA)

HSP 1 Score: 206 bits (525), Expect = 6.700e-65
Identity = 98/161 (60.87%), Postives = 119/161 (73.91%), Query Frame = 1
Query:   16 GYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            GYG  EA R + +D++A E K       NR+FYFAIPPNVF +T  +IK+  MS  G++R+++EKPFG D  S  +L   LA +FDE  +YRIDHYLGKEM QNLLILRF N  F+ IWNRD IQ V  TFKE FGT+GRGGYFD+YGIIRD+IQNHL+QV
Sbjct:   20 GYGDLEAFRSLANDMDAHEAKFPKKLEHNRLFYFAIPPNVFAETGVAIKQTCMSDKGWSRMIIEKPFGRDLTSCEELLDILAKNFDEHQLYRIDHYLGKEMVQNLLILRFGNLWFDRIWNRDNIQCVMLTFKEPFGTDGRGGYFDKYGIIRDIIQNHLLQV 180          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A7R9YCU6_9STRA (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCU6_9STRA)

HSP 1 Score: 215 bits (548), Expect = 9.400e-65
Identity = 98/164 (59.76%), Postives = 125/164 (76.22%), Query Frame = 1
Query:    7 VTGGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            + G Y S ++ + +   L  WE   G G  ANR++YFAIPPNVFL +A +IK  G+S +G+TRL+VEKPFGHD ESA  L  ++ A F E Y+YRIDHYLGKEM QN L+LRF+N   EP+ NR+++ S+T TFKENFGT+GRGGYFD+YGIIRD++QNHLMQV
Sbjct:  101 IAGQYDSEDSFKTVAERLTEWEGGQGAGPKANRLYYFAIPPNVFLASATAIKAQGLSPSGWTRLIVEKPFGHDLESATALADNMNAIFTEEYLYRIDHYLGKEMVQNTLVLRFANAWLEPLMNRNHVASITVTFKENFGTQGRGGYFDKYGIIRDIMQNHLMQV 264          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A448YXV1_9STRA (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXV1_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.310e-63
Identity = 94/151 (62.25%), Postives = 125/151 (82.78%), Query Frame = 1
Query:   46 MISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            M+SDL+ +ENK+   ++ANR+FY A+PPNVF ++   IK+VGM +TG+TR+VVEKPFG D ++  +L K L+  FDE ++YRIDHYLGKE+ QNL++ RF N M+EPIWNR+ I+SVT TFKE FGTEGRGGYFD++GIIRD++QNHL+QV
Sbjct:    1 MVSDLDEFENKS-ESQHANRLFYLAVPPNVFGESGVVIKKVGMCTTGWTRVVVEKPFGRDLDTCNELLKSLSEDFDEEHLYRIDHYLGKEVVQNLMLFRFGNPMWEPIWNRESIESVTITFKEPFGTEGRGGYFDQFGIIRDILQNHLLQV 150          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A7S3UV83_HETAK (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV83_HETAK)

HSP 1 Score: 213 bits (541), Expect = 8.020e-63
Identity = 99/162 (61.11%), Postives = 125/162 (77.16%), Query Frame = 1
Query:   13 GGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            G YGS + M   I D+E WE   G   NANR+FYFAIPP+VF+  AA+IK  G+S +G+TRL++EKPFG+D  SA K+ ++L AHF E  +YRIDHYLGKEM QN+++ RFSN ++E +WNRD + SV  TFKE FGTEGRGGYFD YGI+RD++QNHLMQV
Sbjct:  199 GMYGSEKHMSATIQDIEKWEAAQGFS-NANRLFYFAIPPSVFVPQAAAIKAAGVSPSGWTRLIIEKPFGNDLASAEKMARELNAHFTERDIYRIDHYLGKEMVQNMMVFRFSNVLWERLWNRDTVDSVLITFKEPFGTEGRGGYFDGYGIVRDIMQNHLMQV 359          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A6A3YFJ2_9STRA (Glucose-6-phosphate 1-dehydrogenase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YFJ2_9STRA)

HSP 1 Score: 211 bits (537), Expect = 8.740e-63
Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = 1
Query:   10 TGGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            +G Y S E + K+  ++E  E   G+   ANR+FYFAIPP VF+    SIK+V ++S G+ RL+VEKPFGHD +S  KL++D+ A + E  +YRIDHYLGKEM QNLL+LRF NT+FEPIWNR+Y+ SVT TFKE+ GT+GRGGYFD YGIIRDV+QNHL+QV
Sbjct:  137 SGSYDSAEDVGKVSKEMETLETAQGSPV-ANRLFYFAIPPTVFVPIGTSIKQVALTSRGWNRLIVEKPFGHDLDSFNKLSQDMGALYGEDEIYRIDHYLGKEMVQNLLVLRFGNTIFEPIWNRNYVSSVTITFKEDIGTQGRGGYFDSYGIIRDVMQNHLLQV 298          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A7S3V057_9STRA (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V057_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.000e-62
Identity = 99/163 (60.74%), Postives = 124/163 (76.07%), Query Frame = 1
Query:   10 TGGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            +G Y    A++K   ++    +K  N    NRVFYFA+PPN F+DTAAS+K  GMS  GF RL+VEKPFGHD ESA K+  DL A FDESY+YRIDHYLGKEM QN++ILRF N+  EPIWNR+++++V  +FKE+ GT GRGGYFD+ GIIRD++QNHLMQV
Sbjct:  103 SGQYSDAAALKKHSEEMTKKFHK--NPSVENRVFYFALPPNAFIDTAASVKAGGMSPNGFNRLIVEKPFGHDLESAEKMGADLGAIFDESYLYRIDHYLGKEMVQNMMILRFGNSWLEPIWNRNFVKAVVISFKEDIGTMGRGGYFDKSGIIRDIMQNHLMQV 263          
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Match: A0A7S3XL23_HETAK (Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL23_HETAK)

HSP 1 Score: 210 bits (534), Expect = 2.280e-62
Identity = 104/163 (63.80%), Postives = 123/163 (75.46%), Query Frame = 1
Query:   13 GGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTAASIKEVG-MSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDHYLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFDRYGIIRDVIQNHLMQV 498
            G YGS ++M +++  L  W          NR+FYFAIPP VFL TAA+IK  G +S TG+TRL+VEKPFGHD  SA +L   L AHFDESY+YRIDHYLGKEM QNLL++RFSN M+E IWNR  +QSV  TFKE FGT+GRGGYFD  GIIRD++QNHLMQV
Sbjct:  127 GQYGSIDSMVELMGFLSEWG--AAPAEKVNRLFYFAIPPTVFLQTAAAIKAGGGVSPTGWTRLIVEKPFGHDLASAQELAAGLNAHFDESYIYRIDHYLGKEMVQNLLVMRFSNIMWESIWNRTTVQSVLITFKEPFGTQGRGGYFDGSGIIRDIMQNHLMQV 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75654.15247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD0_ECTSI5.320e-9579.78Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Ectoca... [more]
A0A836CPA6_9STRA5.220e-7871.17Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
A0A7S3ZDH1_9EUKA2.610e-6660.49Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Lothar... [more]
A0A7S2WI22_9STRA6.700e-6560.87Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7R9YCU6_9STRA9.400e-6559.76Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Pingui... [more]
A0A448YXV1_9STRA5.310e-6362.25Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Pseudo... [more]
A0A7S3UV83_HETAK8.020e-6361.11Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Hetero... [more]
A0A6A3YFJ2_9STRA8.740e-6360.74Glucose-6-phosphate 1-dehydrogenase n=7 Tax=Phytop... [more]
A0A7S3V057_9STRA2.000e-6260.74Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Aplano... [more]
A0A7S3XL23_HETAK2.280e-6263.80Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Hetero... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75654contigH-elongata_contig75654:321..2023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.4
Seed ortholog evalue5.2e-76
Seed eggNOG ortholog2880.D7FLD0
Preferred nameG6PD5
KEGG rclassRC00001,RC00066
KEGG koko:K00036
KEGG ReactionR00835,R02736,R10907
KEGG Pathwayko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230
KEGG ModuleM00004,M00006,M00008
GOsGO:0003674,GO:0003824,GO:0004345,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0016491,GO:0016614,GO:0016616,GO:0019318,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0046686,GO:0050896,GO:0051156,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.glucose-6-phosphate dehydrogenase activity
EggNOG OGsCOG0364@1,KOG0563@2759
EC1.1.1.363,1.1.1.49
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size498
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75654.15247.1prot_H-elongata_contig75654.15247.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75654 321..2023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.803027-CDS-H-elongata_contig75654:320..3661622931161.803027-CDS-H-elongata_contig75654:320..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75654 321..366 -
1691679723.5679827-CDS-H-elongata_contig75654:320..3661691679723.5679827-CDS-H-elongata_contig75654:320..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75654 321..366 -
1622931161.8158665-CDS-H-elongata_contig75654:1341..15501622931161.8158665-CDS-H-elongata_contig75654:1341..1550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75654 1342..1550 -
1691679723.579031-CDS-H-elongata_contig75654:1341..15501691679723.579031-CDS-H-elongata_contig75654:1341..1550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75654 1342..1550 -
1622931161.8341327-CDS-H-elongata_contig75654:1780..20231622931161.8341327-CDS-H-elongata_contig75654:1780..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75654 1781..2023 -
1691679723.587088-CDS-H-elongata_contig75654:1780..20231691679723.587088-CDS-H-elongata_contig75654:1780..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75654 1781..2023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75654.15247.1

>prot_H-elongata_contig75654.15247.1 ID=prot_H-elongata_contig75654.15247.1|Name=mRNA_H-elongata_contig75654.15247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
HGVTGGYGSTEAMRKMISDLEAWENKTGNGRNANRVFYFAIPPNVFLDTA
ASIKEVGMSSTGFTRLVVEKPFGHDYESALKLTKDLAAHFDESYVYRIDH
YLGKEMTQNLLILRFSNTMFEPIWNRDYIQSVTFTFKENFGTEGRGGYFD
RYGIIRDVIQNHLMQV
back to top

mRNA from alignment at H-elongata_contig75654:321..2023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75654.15247.1 ID=mRNA_H-elongata_contig75654.15247.1|Name=mRNA_H-elongata_contig75654.15247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1703bp|location=Sequence derived from alignment at H-elongata_contig75654:321..2023- (Himanthalia elongata Himel1 dioecious)
CACGGGGTAACAGGAGGCTACGGCTCCACGGAAGCCATGAGGAAAATGAT TTCAGATCTGGAGGCCTGGGAAAATAAGACGGGTAATGGGAGAAATGCAA ACCGTGTTTTCTACTTCGCGATCCCGCCGAACGTGTTTCTCGACACGGCT GCGTCGATTAAGGAAGTGGGCATGAGTTCGACTGGATTCACCCGGCTTGT GGTGGAGAAGCCTTTCGGCCACGACTACGAGTCCGCCCTAAAGGTAAGGA GTCGCTTGCCTTCAAAGCAACCCCGATATTCAACATACCGTTCAGTTGGC TATATAGGTATATGACGGCGCAAAACAGAAAGAGATGGGTCTGAAAAGTT ATTTACGAAACGATTGTCTCGCGACCCGAAGCCAAAGACATTCCCCAGCA GCATTCAATTTCCTCTTTCTGAAGCACGTTTTAATAAATCGAACACCGTT CTGACTGCTTTGCAATGCCGCAGCTCACCAAAGATCTGGCGGCGCATTTC GACGAGTCCTACGTGTACCGCATTGATCACTATTTGGGTAAGGAGATGAC CCAGAACCTGCTTATCTTGCGCTTCTCGAACACTATGTTCGAACCCATTT GGAACCGTGACTACATCCAAAGTGTTACGTTCACCTTCAAGGAGAACTTC GGGACGGAGGGGCGTGGCGGCTACTTTGACAGGTAAATTTTAATGCCTGA ACACGCTCATTAAAAAAAACTGAACAACAGCACGCCCCAAACGCTAAATA TTAGAGTACAGTTTAAGCGAGATCCGAATATGTATCGATAGCACATATAC CCTGTGCCAATAGTAGGTGTGGGAGAAGATAGGCGTACAATAATTGGTCC ATGGGGTTACCTAGATAGGCTTCACCCGTTACTCAAGCTACCTGGGGGAT TGCTGGCTCAGTGACGGTGGACTCTCTGTAGTAAACGCCATCAGTACTGT AAGCAATTGCAATTGCGTGACATGGTGAAATTGGGATTGATCCGATGGCG GTTGATAGTAGAAATGGACGCCGTCGCGGAAAACGGAAGGATTGAGATAA TCCCGGGAGTAAGCACCAGATTCAGTATGCAGTATGATGGATTCGGAGAA TGAGCGGGCTGATACGAGACGGGACTGCCGAACCCGAGACCAAATTATCA GGCGCGAACGGGGACAGGGAAAAACAATTTTCTTTGTTTAGATGACCACA AGCAGGAGGTAACCAAATCCGGTTGATCTTACTCTATACTCGTTAGATGT GATGACGTCATGACCACATACAGCGTCCGTACGTTGTTTCCTGCTAATGG TAAGCTCGGATTATTTTTACTTAATTCTAAATAAGGAAGTTCAACCTTTG ATTTGATAATATATAGGAGTGGTAAATAAATCTGAATGGAAATACCCAGT AATGTAAAAGATCGAAAACGTGAAATGAGACGGATTGATACTGTATATAA TTTAGGACAGAGACGGAAGTATCTAAAGAGGGGATTTGTAGTTGAATGGG CTTGTAAGTGTTGTTCGTTTGGGTGACTAAAAGTGGTCTAGGGGGCAGTC CATACTAAACGAATAAGCGCTATATATTTAATAAAATGTATTCCATCGGT CCTTGGTACCGAACATGTGTATGTTGACTAACTGCCTATGCTCACTTACC ATTCCAGGTACGGCATCATCCGTGACGTCATCCAAAACCATCTCATGCAG GTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75654:321..2023-

>mRNA_H-elongata_contig75654.15247.1 ID=mRNA_H-elongata_contig75654.15247.1|Name=mRNA_H-elongata_contig75654.15247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig75654:321..2023- (Himanthalia elongata Himel1 dioecious)
CACGGGGTAACAGGAGGCTACGGCTCCACGGAAGCCATGAGGAAAATGAT
TTCAGATCTGGAGGCCTGGGAAAATAAGACGGGTAATGGGAGAAATGCAA
ACCGTGTTTTCTACTTCGCGATCCCGCCGAACGTGTTTCTCGACACGGCT
GCGTCGATTAAGGAAGTGGGCATGAGTTCGACTGGATTCACCCGGCTTGT
GGTGGAGAAGCCTTTCGGCCACGACTACGAGTCCGCCCTAAAGCACGGGG
TAACAGGAGGCTACGGCTCCACGGAAGCCATGAGGAAAATGATTTCAGAT
CTGGAGGCCTGGGAAAATAAGACGGGTAATGGGAGAAATGCAAACCGTGT
TTTCTACTTCGCGATCCCGCCGAACGTGTTTCTCGACACGGCTGCGTCGA
TTAAGGAAGTGGGCATGAGTTCGACTGGATTCACCCGGCTTGTGGTGGAG
AAGCCTTTCGGCCACGACTACGAGTCCGCCCTAAAGCTCACCAAAGATCT
GGCGGCGCATTTCGACGAGTCCTACGTGTACCGCATTGATCACTATTTGG
GTAAGGAGATGACCCAGAACCTGCTTATCTTGCGCTTCTCGAACACTATG
TTCGAACCCATTTGGAACCGTGACTACATCCAAAGTGTTACGTTCACCTT
CAAGGAGAACTTCGGGACGGAGGGGCGTGGCGGCTACTTTGACAGCTCAC
CAAAGATCTGGCGGCGCATTTCGACGAGTCCTACGTGTACCGCATTGATC
ACTATTTGGGTAAGGAGATGACCCAGAACCTGCTTATCTTGCGCTTCTCG
AACACTATGTTCGAACCCATTTGGAACCGTGACTACATCCAAAGTGTTAC
GTTCACCTTCAAGGAGAACTTCGGGACGGAGGGGCGTGGCGGCTACTTTG
ACAGGTACGGCATCATCCGTGACGTCATCCAAAACCATCTCATGCAGGTG
GTACGGCATCATCCGTGACGTCATCCAAAACCATCTCATGCAGGTG
back to top