mRNA_H-elongata_contig7560.15243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7560.15243.1
Unique NamemRNA_H-elongata_contig7560.15243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE)

HSP 1 Score: 528 bits (1359), Expect = 6.060e-177
Identity = 256/453 (56.51%), Postives = 326/453 (71.96%), Query Frame = 1 
Query:    1 KQHPPTR-GIIVNLAVKSAEKFVEFIDNATGAKEYFRFVGESGKIAHLAVDVDGVTVYVAELGSDFDTDAMKETHVKLHLNCDDPLATEKNLLEAGATELIKCEQHSWGAMYGQYLDPLGQIWTISNSSSSTIHDLPEHLARKIIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHCGADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSETKTGPTLTEEDMAVDLKIGAKYXXXXTWTVDDVPTMYCFGEVSTCPAKGPSIAQEMKAMIPLAFAGATKAGVTPLGPLVAAYFTWNSSEGGETSFTCGPTVAAGAPVP-------EKSGLGAREVGGCRCVTVIHMGPYDQLMVTYSATFEWIKAKKYESRMPVVEIYENNLKEVEPEKLRTKICIPIVSK 1335
            ++HPPTR GIIV++ V+SA+KFV+F+  A  AKEYFRF  E GKI HLA+D+ GV +YV ELG+  DT A+   H +LHLN DDP      L+E GA EL K  +  WGA +G Y DP GQIW++SNS++ TI D+P+ LARKIIPFVSVRD +AYM FL+ A GAE  YP +KDPTGKIM AEMK+NGG+IM+GDHC  D  + EAS+TI + V   +A PLAK+F+ NGGE+++E SMQFWGQVWGR  DPFGQ   + E + GP  + EDMA D++IGAKY     W V+D+P +YC+G +ST  A GP+I++E+   +P AFAGA  AG+   GP  +AY+TW+SS GG T FTCGP+VA G           +  GLG R  GGC+CVT +H GPYD+L   Y ATFEW++AK YESRMPV E+YEN+ K+  PEKL+TK+CIPIV+K
Sbjct:   17 RKHPPTRRGIIVDVMVESADKFVDFMGKAAKAKEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTN-TIEDVPKELARKIIPFVSVRDCSAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCSKDASKTEASMTIAYEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCHDPFGQPXXLCEVQEGPPPSNEDMAKDMEIGAKYNWRYNWVVEDMPIVYCYGAMSTSAANGPAISEEINKTLPAAFAGAAAAGLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGGASALMKDVNGDDIGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAK 468
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 3.470e-164
Identity = 234/411 (56.93%), Postives = 299/411 (72.75%), Query Frame = 1 
Query:  136 HLAVDVDGVTVYVAELGSDFDTDAMKETHVKLHLNCDDPLATEKNLLEAGATELIKCEQHSWGAMYGQYLDPLGQIWTISNSSSSTIHDLPEHLARKIIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHCGADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSETKTGPTLTEEDMAVDLKIGAKYXXXXTWTVDDVPTMYCFGEVSTCPAKGPSIAQEMKAMIPLAFAGATKAGVTPLGPLVAAYFTWNSSEGGETSFTCGPTVAAGAPVP-------EKSGLGAREVGGCRCVTVIHMGPYDQLMVTYSATFEWIKAKKYESRMPVVEIYENNLKEVEPEKLRTKICIPIVSKESVP 1347
            HLA+D+ GV +YV ELG+  DT A+   H +LHLN DDP      L+E GA EL K  +  WGA +G Y DP GQIW++SNS++ TI D+P+ LARKIIPFVSVRD +AYM F++ A GAE  YP +KDPTGKIM AE+K+NGG+IM+GDHCG D  + EAS+TI+  V   +A PLAK+F+ NGGE+++E SMQFWGQVWGR +DPFGQ WG+ E +TGPT + EDMA D++IGAKY    TW V+D+PT+YC+G +ST  A GP+I++E    +P AFAGA  AG+   GP  +AY+TW+ S GG T FTCGP+VA G           + +GLG R  GGC+CVT +H GPYDQLM  Y ATFEW++ K YESRMPV E+YEN+ K+  PEKL+TK+CIPIV+K + P
Sbjct:    2 HLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTN-TIEDVPKKLARKIIPFVSVRDCSAYMTFVTDALGAEVVYPPAKDPTGKIMCAELKINGGIIMVGDHCGEDASKTEASMTISHEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKYDWRYTWAVEDMPTVYCYGAMSTSEATGPAISEETNKTLPAAFAGAAAAGLAMAGPPASAYYTWDPSPGGTTKFTCGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDQLMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGTGP 411
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: D8LJ97_ECTSI (AraC family transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ97_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 8.260e-99
Identity = 146/269 (54.28%), Postives = 195/269 (72.49%), Query Frame = 1 
Query:  550 MKLNGGLIMIGDHCGADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSETKTGPTLTEEDMAVDLKIGAKYXXXXTWTVDDVPTMYCFGEVSTCPAKGPSIAQEMKAMIPLAFAGATKAGVTPLGPLVAAYFTWNSSEGGETSFTCGPTVAAGAPVP-------EKSGLGAREVGGCRCVTVIHMGPYDQLMVTYSATFEWIKAKKYESRMPVVEIYENNLKEVEPEKLRTKICIPIVSK 1335
            MK+NGG++M+GDHC  D  + EAS+T+++ V   +A PLAK+F+ NGGE+++E SMQFWGQVWGR +DPFGQ WG+ E + GP  + EDMA D++IGAKY    TW V+D+PT+YC+G +ST  A  P+I++E K  +P AFAGA  AG+   GP  +A++TW+ S GG T FT GP+VA G           + +GLG R  GGC+CVT +H GPYD+L   Y ATFEW++AK YESRMPV E+YEN+ K+  PEKL+TK+CIPIV+K
Sbjct:    1 MKINGGIVMLGDHCSKDASKTEASMTVSYEVRKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSNEDMAKDMEIGAKYDWHYTWVVEDMPTVYCYGAMSTSAANTPAISEETKKTLPAAFAGAAAAGLAMAGPPASAFYTWDPSPGGTTKFTSGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAK 269
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: D8LJ96_ECTSI (Glyoxalase family protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ96_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.930e-37
Identity = 81/179 (45.25%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 KQHPPTR-GIIVNLAVKSAEKFVEFIDNATGAK-----------------------------------EYFRFVGESGKIAHLAVDVDGVTVYVAELGSDFDTDAMKETHVKLHLNCDDPLATEKNLLEAGATELIKCEQHSWGAMYGQYLDPLGQIWTISNSSSSTIHDLPEHLARKI 429
            ++HPPTR GIIVN+ V+SA+KFV+F+   T AK                                   EYFRF  E GKI HLA+D+ GV +YV ELG+  DT A+   H +LHLN DDP+     L+E GA EL K  +  WGA +G Y DP GQIW++SNS++ TI D+P+ LARKI
Sbjct:   17 RKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKIWRLTDGGGDALSRPSRTSYLAAPYTHNHRGFPVQEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPIGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTN-TIEDVPKELARKI 194
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: A0A6I4ZI16_9CHLR (VOC family protein n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZI16_9CHLR)

HSP 1 Score: 82.0 bits (201), Expect = 2.490e-14
Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = 1 
Query:  427 IIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHCG-----ADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSETKTGPTLTEE 813
            + P+++V DAAA + F  KAFGAEE   A      K+MHAE+ +NGGLIM+ D          T        +T  ++   A  L +     G E+      QFWG ++GR RDPFG  W V  ++  P   EE
Sbjct:   13 LTPYLTVSDAAAAIAFYVKAFGAEEIERALTPDGQKVMHAEVAVNGGLIMLSDDFSESPQQGSTPEALGGSPVTIHLSVEDAEALWERAVAAGAEVTMPLERQFWGALYGRLRDPFGHYWSVI-SEMAPVSDEE 145
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: UPI001556A403 (VOC family protein n=1 Tax=Pseudoruegeria sp. HB172150 TaxID=2721164 RepID=UPI001556A403)

HSP 1 Score: 77.8 bits (190), Expect = 3.750e-13
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:  415 LARKIIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDH---CGADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSE 783
            L R ++P+++++DAA  + F   AFGAE       D  GKIM+A + +N G IM+ D+    G  + + + S+T+   V  G A    +A +  G E+  E  ++FWG  +GR RDPFG  W + E
Sbjct:    9 LMRGVLPYLAIKDAADAISFYKVAFGAEMIGEPYADEQGKIMNASLAINDGTIMLMDNNEAYGIASAKGDRSMTLQLVVDDGTAW-WNRALEA-GCEVSQEYKLEFWGDYYGRIRDPFGLEWAILE 132
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: UPI001BEADD7E (VOC family protein n=1 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI001BEADD7E)

HSP 1 Score: 77.4 bits (189), Expect = 6.770e-13
Identity = 48/135 (35.56%), Postives = 69/135 (51.11%), Query Frame = 1 
Query:  379 SSSSTIHDLPEHLARKIIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHCG----ADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMW 771
            ++   +  +PE     ++P + V DAAA +DF  +AFGA E +     P G IMHAE+++ G ++M+GD       A T     SV +   V    A  LA+     G E+V EP+ QF G      RDPFG +W
Sbjct:    2 TTHEAVQIVPERYRTAVVPHIMVADAAAALDFYGRAFGAVEDFRLDA-PGGGIMHAEIRIGGAVLMLGDVSEGPFTAPTTLGGTSVALHVFVPDVDA--LARTAAAAGAELVQEPADQFHGDRTAILRDPFGHIW 133
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: A0A2W0B754_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0B754_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 8.920e-13
Identity = 69/277 (24.91%), Postives = 114/277 (41.16%), Query Frame = 1 
Query:   37 LAVKSAEKFVEFIDNATGAKEYFRFVGESGKIAHLAVDVDGVTVYVAE---LGSDFDTDAMKETHVKLHLNCDDPLATEKNLLEAGATELIKCEQHSWGAMYGQYLDPLGQIWTISNSSSSTIHDLPEHLARK-----------------------IIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHCGADTDRQEASVTITFGVATGKAMPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSETK 789
            L  K A   +EF   A GAKE  RF  E G I H  + +    + + E    G  F  + +  T + + L   D  A  ++ + AGAT +       +G   G   DP G +W +S          PE + R+                       + P+   ++A A ++F+ +AFGAEE + +     G  +HAE+++   ++M+G   G     +  S+ + F +         K     GG  + EP  Q +G+  G  +DP G  W ++  K
Sbjct:   82 LRFKKAGLAIEFYKRAFGAKEIMRFENEGG-IGHAELMIGDSIIMLGEEWPQGGRFSAETLGNTPISIELTVPDVDAFVEHAVAAGATVVKPVADEFYGYRQGTLRDPFGYLWGVSTIKEQVS---PEEMHRRLRAMQSEQPKKTKVDPVPKGYRTVTPYPVAQNADALIEFVKRAFGAEEGFRSIGSAGG--IHAEIRIGDSMLMMGGG-GPGLSWRGESIPMAFHMYVPDCDATYKQALEAGGTSIGEPVDQPYGERSGGVKDPAGNYWYIATYK 351
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: A0A7Z9UDR8_9BACT (VOC family protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UDR8_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 1.290e-12
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1 
Query:  394 IHDLPEHLARKIIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHC---GADTDR--QEASVTITFGVATGKAMPLAKAFQ---TNGGEIVDEPSMQFWGQVWGRFRDPFGQMW 771
            I+ LPE  ++ +IP++ + D A  MDF    F AEE          KIMHAEM+++G ++ +GD C   GA + +  +  SVT+T        +   K FQ    +G ++V +  +QFWG   G   DPFG  W
Sbjct:    2 INPLPEG-SQPLIPYMVMHDCAKAMDFYKNVFLAEEVMRMPSPDGKKIMHAEMRISGCMVYMGDECPQQGAKSPKGAKHRSVTMTL-----YCLDAEKVFQRAVNHGAKVVKDMELQFWGDKMGSLIDPFGHQW 129
[Close]
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Match: A0A2V7X1W6_9BACT (Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7X1W6_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 1.890e-12
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 1 
Query:  427 IIPFVSVRDAAAYMDFLSKAFGAEETYPASKDPTGKIMHAEMKLNGGLIMIGDHC---GADTDRQEASVTITFGV-ATGKAMPLAKAFQTNGGEIVDEPSM-QFWGQVWGRFRDPFGQMWGVSETKTGPTLTEEDMAVD 828
            + PF++V+D A  ++F  +AFGAEE   A KDP+GK+MHAE+K+   +IM+ D     GA +       ++   +  T      A+A +   G  V+ P M QFWG  +GR +DPFG  W ++      +  E   A+D
Sbjct:   13 VTPFMTVKDCARAIEFYKQAFGAEERGIA-KDPSGKVMHAEIKIGDSVIMMADEFPDFGALSPESVGGSSMGLHIYVTDVDGAFARAVKA--GAKVEMPVMDQFWGDRYGRLKDPFGHKWSIATHVKDMSSDEMKRAMD 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7560.15243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L888_9PHAE6.060e-17756.51VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JNL3_9PHAE3.470e-16456.93AraC_E_bind domain-containing protein n=2 Tax=Ecto... [more]
D8LJ97_ECTSI8.260e-9954.28AraC family transcriptional regulator n=1 Tax=Ecto... [more]
D8LJ96_ECTSI3.930e-3745.25Glyoxalase family protein (Partial) (Fragment) n=1... [more]
A0A6I4ZI16_9CHLR2.490e-1436.57VOC family protein n=2 Tax=Dehalococcoidia bacteri... [more]
UPI001556A4033.750e-1335.71VOC family protein n=1 Tax=Pseudoruegeria sp. HB17... [more]
UPI001BEADD7E6.770e-1335.56VOC family protein n=1 Tax=unclassified Streptomyc... [more]
A0A2W0B754_9BACT8.920e-1324.91Uncharacterized protein n=3 Tax=Acidobacteria bact... [more]
A0A7Z9UDR8_9BACT1.290e-1235.07VOC family protein n=1 Tax=Phycisphaerales bacteri... [more]
A0A2V7X1W6_9BACT1.890e-1235.25Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7560contigH-elongata_contig7560:6384..10213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.7
Seed ortholog evalue1e-10
Seed eggNOG ortholog1449049.JONW01000007_gene3829
KEGG koko:K04750
EggNOG free text desc.Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
EggNOG OGs1RF5T@1224,2KJUS@204458,2VFDR@28211,COG2764@1,COG2764@2
COG Functional cat.S
Best tax levelCaulobacterales
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons5
Model size2588
Cds size1146
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.2790818-UTR-H-elongata_contig7560:6383..65901622931161.2790818-UTR-H-elongata_contig7560:6383..6590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7560 6384..6590 +
1691679723.4366326-UTR-H-elongata_contig7560:6383..65901691679723.4366326-UTR-H-elongata_contig7560:6383..6590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7560 6384..6590 +
1622931161.4412863-UTR-H-elongata_contig7560:8978..102131622931161.4412863-UTR-H-elongata_contig7560:8978..10213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7560 8979..10213 +
1691679723.499558-UTR-H-elongata_contig7560:8978..102131691679723.499558-UTR-H-elongata_contig7560:8978..10213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7560 8979..10213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.2967427-CDS-H-elongata_contig7560:6590..67121622931161.2967427-CDS-H-elongata_contig7560:6590..6712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 6591..6712 +
1691679723.4474635-CDS-H-elongata_contig7560:6590..67121691679723.4474635-CDS-H-elongata_contig7560:6590..6712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 6591..6712 +
1622931161.318233-CDS-H-elongata_contig7560:7115..73201622931161.318233-CDS-H-elongata_contig7560:7115..7320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 7116..7320 +
1691679723.457353-CDS-H-elongata_contig7560:7115..73201691679723.457353-CDS-H-elongata_contig7560:7115..7320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 7116..7320 +
1622931161.3449705-CDS-H-elongata_contig7560:7682..78811622931161.3449705-CDS-H-elongata_contig7560:7682..7881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 7683..7881 +
1691679723.467381-CDS-H-elongata_contig7560:7682..78811691679723.467381-CDS-H-elongata_contig7560:7682..7881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 7683..7881 +
1622931161.3952413-CDS-H-elongata_contig7560:8165..83381622931161.3952413-CDS-H-elongata_contig7560:8165..8338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 8166..8338 +
1691679723.4775817-CDS-H-elongata_contig7560:8165..83381691679723.4775817-CDS-H-elongata_contig7560:8165..8338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 8166..8338 +
1622931161.417769-CDS-H-elongata_contig7560:8531..89781622931161.417769-CDS-H-elongata_contig7560:8531..8978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 8532..8978 +
1691679723.4880016-CDS-H-elongata_contig7560:8531..89781691679723.4880016-CDS-H-elongata_contig7560:8531..8978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7560 8532..8978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7560.15243.1prot_H-elongata_contig7560.15243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7560 6591..8978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7560.15243.1

>prot_H-elongata_contig7560.15243.1 ID=prot_H-elongata_contig7560.15243.1|Name=mRNA_H-elongata_contig7560.15243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=382bp
MKETHVKLHLNCDDPLATEKNLLEAGATELIKCEQHSWGAMYGQYLDPLG
QIWTISNSSSSTIHDLPEHLARKIIPFVSVRDAAAYMDFLSKAFGAEETY
PASKDPTGKIMHAEMKLNGGLIMIGDHCGADTDRQEASVTITFGVATGKA
MPLAKAFQTNGGEIVDEPSMQFWGQVWGRFRDPFGQMWGVSETKTGPTLT
EEDMAVDLKIGAKYGWKYTWTVDDVPTMYCFGEVSTCPAKGPSIAQEMKA
MIPLAFAGATKAGVTPLGPLVAAYFTWNSSEGGETSFTCGPTVAAGAPVP
EKSGLGAREVGGCRCVTVIHMGPYDQLMVTYSATFEWIKAKKYESRMPVV
EIYENNLKEVEPEKLRTKICIPIVSKESVPA*
back to top

mRNA from alignment at H-elongata_contig7560:6384..10213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7560.15243.1 ID=mRNA_H-elongata_contig7560.15243.1|Name=mRNA_H-elongata_contig7560.15243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3830bp|location=Sequence derived from alignment at H-elongata_contig7560:6384..10213+ (Himanthalia elongata Himel1 dioecious)
AAACAGCACCCCCCGACCCGCGGAATCATCGTGAATCTCGCGGTCAAGAG
TGCTGAAAAGTTCGTTGAATTCATTGACAACGCTACCGGGGCCAAAGAGT
ACTTTCGCTTCGTCGGCGAGAGCGGGAAGATCGCACACCTCGCCGTAGAC
GTCGATGGTGTCACCGTCTACGTGGCGGAGCTGGGCAGCGATTTTGACAC
TGATGCCATGAAGGAAACCCATGTAAAGCTGCACCTCAACTGCGATGATC
CGCTCGCCACGGAAAAAAATCTACTGGAGGCCGGTGCTACCGAGCTGATC
AAATGCGAGCAGCATTCCTGGGGCGCCATGTAAGCCTCGGACTTATTATA
GTTGTATTTCTTCGCTCTAGTATTTTTGTTGCTGTTTCGCGTTGAGTGTT
AGTAGGGTTTGAGCCGACAGTCCTGAGCGACTATCTTCGCGGCGTTGTCA
CTCGTAGTCACTGGGCTCAAGATCAAGTCGAGGCCTACGCAATTCTTTGA
TCAGTGGCGCCATTCGTCAACTAGCTGCCGGGTATATTGTACATTTATGC
TGCACAACACGTGGCGTGTACAGTATGTCCTCAATAAGGCCGTCGTCGGT
TCGCCTAAGATATATTTATATTGGTGAAATAATTATCCATGCTCCTGACT
ACATCACCTGACATGGTGAGCAATACGTAACAGCTGAATGTACACAAGTG
AATATGTTTTACGACAAACTTGAAACTCACAGGTACGGACAGTACCTCGA
CCCCCTCGGCCAGATCTGGACAATCTCCAACTCCTCTAGCTCCACCATCC
ATGACCTTCCCGAGCACTTGGCGCGCAAGATTATTCCTTTCGTCAGCGTT
CGCGACGCCGCTGCTTACATGGACTTCCTGTCGAAGGCATTTGGCGCGGA
GGAGACATACCCCGCATCGAAGGACCCCACCGGCAAGGTGTGAAGGAAGG
CGTAACCGTTCGTCATTCTCGGTTTAGACGGTTATCGGCATATGTGAACG
TTTAGATGAAATATTGCATTTTCCCAGGGTGGTGTTGGTCTGGCTTTCCG
CTGTGCTTCGACCGGAAAGACGAACGCTTGTTGCATTAATTTATACTAGA
GGGCTGACGGAATGCAATACAAACGCTTGTTACATGGACTCCGGCGTACC
TTGATCAATTACCACTGGTCATTTTACCAATCGGTTCATCATGTCACTTG
TATTGAAACATGCTATCTTCAAACTATTGCTTTTGATCCCTGCTACTTCA
CAACCTGAATATATCTAATACGCTACCCCCACTTTTCCCACATTTCAAGA
TCATGCATGCCGAGATGAAGCTCAACGGTGGCCTCATCATGATCGGCGAC
CATTGTGGCGCTGACACCGACAGGCAGGAAGCGTCAGTGACAATCACATT
CGGGGTAGCCACCGGCAAAGCAATGCCCCTGGCCAAGGCGTTCCAGACCA
ATGGGGGAGAAATCGTGGACGAGCCTTCAATGCAGTTTTGGGGTCAAGGT
GAGCTGAGATTATGTTTCACTCAGCGTACGACGATATTTCGCTTTTTGTG
TGCGTGTATCCTATTATACAAGATGTTCGTTTTCCCAGCAGTGTTTCTTG
CCCCACGGATTGTCGGCGGCGTCTCATGCAGTGTACCAGACGTCTTGTAC
AATGCGCTGCTCCTGTTTGTTGCTGGTGCCGATCCGATAAAATTCATGGC
AGCCACCCAGTTTATCAATTTCCCACCAGAGCCATGTAATATTTTATGAC
GTCTTTTGTGTAACGTTTGGTTTCGTGACCAGTTTGGGGTCGCTTCAGGG
ACCCCTTCGGTCAGATGTGGGGGGTTTCCGAGACTAAGACTGGGCCAACC
CTAACGGAAGAGGACATGGCAGTGGATCTGAAGATCGGTGCCAAGTACGG
TTGGAAGTACACCTGGACGGTAGACGATGTGCCGACCATGTACTGCTTCG
GTGAGGTAAGCGTTGCGTCTGACATCTGCGTGTCGAAACAAGAAGCCCCT
TTCTGAAGATTGATTGATCTCTGTCGTGGCGTCATCTCCATTTTTGCAGC
TGTTGCAAACCCGTATCAGTGGGACATGCTATTTTGTAATACATCGACTA
ATGCCCCAAAACTTACGGAATTCACCCCGCTCTCGTCACGGGGATCAGGT
CAGCACCTGCCCGGCGAAGGGACCATCTATTGCCCAAGAAATGAAAGCCA
TGATACCCTTGGCTTTCGCCGGAGCTACCAAGGCCGGCGTGACCCCGCTC
GGACCCCTCGTAGCGGCGTACTTTACGTGGAATTCCTCTGAGGGCGGCGA
GACCAGCTTCACGTGCGGTCCGACTGTGGCTGCTGGAGCTCCCGTACCGG
AGAAGTCCGGTCTAGGGGCGCGGGAGGTAGGAGGGTGCAGGTGCGTGACC
GTAATCCATATGGGGCCATACGATCAGCTGATGGTGACTTACTCGGCTAC
TTTTGAGTGGATCAAGGCTAAAAAGTACGAGAGTCGCATGCCGGTCGTGG
AGATATACGAAAACAACTTGAAGGAAGTGGAACCGGAAAAGCTAAGGACG
AAGATTTGCATCCCGATCGTGTCCAAGGAATCTGTTCCGGCCTAAATGAT
CCACAAGGCCGATGCTCAAGCCACGATGTTCTCAACAATCTAACGCCAGG
ATCAAGTTGATACGGACGCAAATTCTGTGTATGTCATACACACGATTCAT
GGCATAAAAGAAGCGCGATTGTGACGATCTTGGAACATATGATGGAGGAT
TGGATATTTTCATGTAAGTGTTCACGAAATTGTGTTTCGATCTGTTTTAC
TTGAGGTCTCGCTTAATCTTGCTCAGCGACTTCGATGGCGGAGGTGTCGG
CTCGAGTGAGATAGGCCAAGAACGAAAAACACGCAAGTTGTCGCTGAATA
CGAATTCGATAAAGTATAGGTCGCATCAGACATAGCTTTTTCTTTGTTTT
TCTTTTGTGGTTGAAGCGTTCGAGCTACTAGGCTCGCGTTCGTATATTTG
TGTGTAAATGGTACCTCCTCATTTAGGTTACGCAGGATGCTGGCGACGCA
CTAAGCGTATGTGGACACCATTATTGTGTTTTGTGCTGCCTGTACTTGCC
AATTGTCACTTGGGTCGAAATAGCTCTACCAATATATATTTAGCGTGTGT
CCTTTTCTTGCCAATTGTTTTGGAGTAGATCTACAATATTATACTTCTCA
TTCGATTGTTCGTTGTGCGTAGTATCACATCTCGCCTGTACCTTGCTCGG
GGATCGGTAACGCCTGCTAATCCGCCCTATATGCGGCACCGCGGTCAAAT
AGGCTACATGTGAAGTATCGGCTGTTCCCTACCTTGTACATACATATCAA
TGTAGTTTATACGTTGAAAAGCGGATTCATCGGGCAAATAGGGGGGTTCG
CTTCGTCAGTAATATTTGCTTTGTATTGCCTGTTTCGCCCCGGAGTCGAC
GTTACGCGCTTTGTTGTAGCGCGAGGTAATGCCACAAAGATGAAGTAACC
CCTGCAGCTTCAGAGACATTTTTCTCTACTTCATAAATGTGCACAGGTGC
TATATTTGTCCAGAATAATAACAATATAATTACTAGTGAAACATAGCCTC
TGGTGTCTCGATGGCGTAACGGCCGGCACCCTTACGTGGGATCATGCTAG
CTAGTCATTTCTGAACCTCATTTTTTACACCAGGTTCAGTAAAGTCCAGG
AAATCAACTGTCCTCAGGTTCGAGTGCGTACATCAATAGTTGTCGGACAT
AAACTCGGCATCTTGGGTGGAATCAGCAGCTAGTCAGTCGCCTGATGCGT
TGAGTAAATCTTACGAGGGGGCTGGCGATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7560:6384..10213+

>mRNA_H-elongata_contig7560.15243.1 ID=mRNA_H-elongata_contig7560.15243.1|Name=mRNA_H-elongata_contig7560.15243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2292bp|location=Sequence derived from alignment at H-elongata_contig7560:6384..10213+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAAACCCATGTAAAGCTGCACCTCAACTGCGATGATCCGCTCGC
CACGGAAAAAAATCTACTGGAGGCCGGTGCTACCGAGCTGATCAAATGCG
AGCAGCATTCCTGGGGCGCCATATGAAGGAAACCCATGTAAAGCTGCACC
TCAACTGCGATGATCCGCTCGCCACGGAAAAAAATCTACTGGAGGCCGGT
GCTACCGAGCTGATCAAATGCGAGCAGCATTCCTGGGGCGCCATGTACGG
ACAGTACCTCGACCCCCTCGGCCAGATCTGGACAATCTCCAACTCCTCTA
GCTCCACCATCCATGACCTTCCCGAGCACTTGGCGCGCAAGATTATTCCT
TTCGTCAGCGTTCGCGACGCCGCTGCTTACATGGACTTCCTGTCGAAGGC
ATTTGGCGCGGAGGAGACATACCCCGCATCGAAGGACCCCACCGGCAAGG
TACGGACAGTACCTCGACCCCCTCGGCCAGATCTGGACAATCTCCAACTC
CTCTAGCTCCACCATCCATGACCTTCCCGAGCACTTGGCGCGCAAGATTA
TTCCTTTCGTCAGCGTTCGCGACGCCGCTGCTTACATGGACTTCCTGTCG
AAGGCATTTGGCGCGGAGGAGACATACCCCGCATCGAAGGACCCCACCGG
CAAGATCATGCATGCCGAGATGAAGCTCAACGGTGGCCTCATCATGATCG
GCGACCATTGTGGCGCTGACACCGACAGGCAGGAAGCGTCAGTGACAATC
ACATTCGGGGTAGCCACCGGCAAAGCAATGCCCCTGGCCAAGGCGTTCCA
GACCAATGGGGGAGAAATCGTGGACGAGCCTTCAATGCAGTTTTGGGGTC
AAGATCATGCATGCCGAGATGAAGCTCAACGGTGGCCTCATCATGATCGG
CGACCATTGTGGCGCTGACACCGACAGGCAGGAAGCGTCAGTGACAATCA
CATTCGGGGTAGCCACCGGCAAAGCAATGCCCCTGGCCAAGGCGTTCCAG
ACCAATGGGGGAGAAATCGTGGACGAGCCTTCAATGCAGTTTTGGGGTCA
AGTTTGGGGTCGCTTCAGGGACCCCTTCGGTCAGATGTGGGGGGTTTCCG
AGACTAAGACTGGGCCAACCCTAACGGAAGAGGACATGGCAGTGGATCTG
AAGATCGGTGCCAAGTACGGTTGGAAGTACACCTGGACGGTAGACGATGT
GCCGACCATGTACTGCTTCGGTGAGTTTGGGGTCGCTTCAGGGACCCCTT
CGGTCAGATGTGGGGGGTTTCCGAGACTAAGACTGGGCCAACCCTAACGG
AAGAGGACATGGCAGTGGATCTGAAGATCGGTGCCAAGTACGGTTGGAAG
TACACCTGGACGGTAGACGATGTGCCGACCATGTACTGCTTCGGTGAGGT
CAGCACCTGCCCGGCGAAGGGACCATCTATTGCCCAAGAAATGAAAGCCA
TGATACCCTTGGCTTTCGCCGGAGCTACCAAGGCCGGCGTGACCCCGCTC
GGACCCCTCGTAGCGGCGTACTTTACGTGGAATTCCTCTGAGGGCGGCGA
GACCAGCTTCACGTGCGGTCCGACTGTGGCTGCTGGAGCTCCCGTACCGG
AGAAGTCCGGTCTAGGGGCGCGGGAGGTAGGAGGGTGCAGGTGCGTGACC
GTAATCCATATGGGGCCATACGATCAGCTGATGGTGACTTACTCGGCTAC
TTTTGAGTGGATCAAGGCTAAAAAGTACGAGAGTCGCATGCCGGTCGTGG
AGATATACGAAAACAACTTGAAGGAAGTGGAACCGGAAAAGCTAAGGACG
AAGATTTGCATCCCGATCGTGTCCAAGGAATCTGTTCCGGCCTAAGTCAG
CACCTGCCCGGCGAAGGGACCATCTATTGCCCAAGAAATGAAAGCCATGA
TACCCTTGGCTTTCGCCGGAGCTACCAAGGCCGGCGTGACCCCGCTCGGA
CCCCTCGTAGCGGCGTACTTTACGTGGAATTCCTCTGAGGGCGGCGAGAC
CAGCTTCACGTGCGGTCCGACTGTGGCTGCTGGAGCTCCCGTACCGGAGA
AGTCCGGTCTAGGGGCGCGGGAGGTAGGAGGGTGCAGGTGCGTGACCGTA
ATCCATATGGGGCCATACGATCAGCTGATGGTGACTTACTCGGCTACTTT
TGAGTGGATCAAGGCTAAAAAGTACGAGAGTCGCATGCCGGTCGTGGAGA
TATACGAAAACAACTTGAAGGAAGTGGAACCGGAAAAGCTAAGGACGAAG
ATTTGCATCCCGATCGTGTCCAAGGAATCTGTTCCGGCCTAA
back to top