mRNA_H-elongata_contig756.15242.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig756.15242.1
Unique NamemRNA_H-elongata_contig756.15242.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig756.15242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig756contigH-elongata_contig756:1925..5289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.2035935-CDS-H-elongata_contig756:1925..21511622931161.2035935-CDS-H-elongata_contig756:1925..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig756 1926..2151 -
1691679723.4201355-CDS-H-elongata_contig756:1925..21511691679723.4201355-CDS-H-elongata_contig756:1925..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig756 1926..2151 -
1622931161.2233145-CDS-H-elongata_contig756:5215..52891622931161.2233145-CDS-H-elongata_contig756:5215..5289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig756 5216..5289 -
1691679723.4278963-CDS-H-elongata_contig756:5215..52891691679723.4278963-CDS-H-elongata_contig756:5215..5289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig756 5216..5289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig756.15242.1prot_H-elongata_contig756.15242.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig756 1926..5289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig756.15242.1

>prot_H-elongata_contig756.15242.1 ID=prot_H-elongata_contig756.15242.1|Name=mRNA_H-elongata_contig756.15242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
DFRCCCRGVASRDALARPEGSSGWWCRRERAEQCSRKNGLGRPCPRAAVE
GRTSCRRRPSKVSRDGGIDLCGGLLRRRVNSLPGGVERMDATLTVRISAL
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mRNA from alignment at H-elongata_contig756:1925..5289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig756.15242.1 ID=mRNA_H-elongata_contig756.15242.1|Name=mRNA_H-elongata_contig756.15242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3365bp|location=Sequence derived from alignment at H-elongata_contig756:1925..5289- (Himanthalia elongata Himel1 dioecious)
GACTTTCGTTGCTGCTGCCGTGGCGTGGCTAGTCGCGATGCGCTTGCGCG
CCCGGAGGGTTCTTCGGGATGGTGGTGAGCCTCGCAAGCCTTGTGAAAAC
CCCCTTTTTTTTCGTTAGCTCCACAATAGGGATGCCGTGCCGTGAATGAC
CGAGGGTATCGTGTACATAGTATATGATGTAGCAACAATATTCATAGTAT
ATACCGTAATGTACAATTTGCATGATATTTTGTATGACACGTAAGTGTAA
GATAATGTAATATAACACACAATGTGCAACTTCGTACGGTGCTAAGAAGG
TGTGGATGATGTTCGGAAGGTTGGAATGAGTTCATATGTTTTTAAATAAC
AATATATGTTGCGTAGCATAATGCTAGAGATTGTATGCAAAATTACACAC
CCCGGGGATGGAAATCACCCTCTCCCCTCCACCCAGTTCTCGACAGCACA
CAAGAAGCAACGGTTCCCCAATCTTCGTGCTTTCTGTCTAGAGTTTAGGG
AAAATAAAAAGCGTATATCCGTGACGAGGTCTTCTCAAAACCGCTAGGTT
TGCGGTTGCCGTTTGGAGAGTAAAACGAACGGGAACACCCACCCTCGATC
CCCTGCACCCAATCCCTAATCTCCTATCCCCCGGGGGCGTGTTGTGTCGC
AATATCCCGTCGCGCGAAAGGCATCGTGATTAAACGAGGATGGATCACAT
TGTGCGCGAATGTTTTAACCGGGCATGCTTTGCACACAATGATTCCTTGA
CGTGATTTTGTTAAAATTATAGCAAGTGTGGCGTATGGGTAGCGGGATAA
AGCGGCAAGAAAATAATATCGCGTGGGGTGTACGGAGTCCCAATTGTTCG
TGGGAGGGAAACGGTGGCGATAGGGGCCACGGCCTCATCCCGCTGTACTG
TGCTCCTATTGAGGGACGTCATTTTTTTTCTTTAATATAACGAACCTGAT
AACAGAGAATAGTGTCTCATTGTTATAGCTTCAATCATTAAATAAGACCC
AGAGGTGAAGCAGCGGGGGCAGGAGGGAGAGTTGCAGCGGTAGTCCGGCG
CGGTTGCGTAAGCAACCTGAGTAGAATAGGTCAATCCAACGTCCCCAGGG
ACAGCTCCCCATAAGGGAGGGGTGGGGAGGGTATTTGAAAATTGTATTTG
CAAACCGGCGTGGCACCCCCTTGCGTGTAATGCTGGTTTGCGCGGTCTAA
TGCAAATTGATCAAAAAAAGGGTTTGAAGCGCACAAAAAGACTAAACAAG
GAAAAAAATGTTCCCAATCTATGGTTACGAGTAGGAACAACAACGGAACG
GTATCACGATGGTGGATGGGCATCCCCGCTCGATTTTGCCCGACCTCGTG
CACACAGCGTGGAGAAAATACGGTGGACATGAGAAAATCCAAAAATATAT
AGTACAGTACAGTACAAAGCAGCACATAGCGTGCGGCGTCGTTGCCGGCC
GTTTTTAGCCTGTTGTCGAAAGGGGATCGGTTTCTAGGGGGGGCGGGGGC
GGGTACTGAAGTGTTGCATGCCTTAGCTGTTAGGCCATCGACCACACGGT
GTCGGGAGAACGGTTGAGGGTGTGTACGTGTGGAGTGGGGGTAATTTCCT
ACCCCGGGGTGTGTGATTATGTCATCAGCTAGGACGATATATATAAATTA
CGCTGTTTTTTCTTCTTTTTTGTTTGTTTTGTTTTGTTTTTTGCCGTCGG
TGGGAGGAAAATATTATATCGCTTCTCTTTCCGAATTGAATATCGATGCC
CTCGCCACAGATGGTTAGCCGGTCGGATATTCTTTTCCAGGACGCGCGAA
CCCCGCTGAGCTTTCCGAACCTGCTGTTGCTACGGAGTCGCCATCAGACT
GGGGAGAAGTGGTTTTTAGACACCCTAGTCGATTGAAGGACAAAATAACA
GCCCTCTCCCCTCCCACACACACGTCTGTAGCATCACTCTTGCTCCGAAC
CAAAAGCCTAATAGACCCCAAAAAATACTTGTAGAAAGCATCTTCCCCCC
TCCCCCAAAACAACAAAACAACCAACTATACGTACCTCCCTCCACGAAAG
GCAACAGATACAAACACACACATATACACACACCGTAGAGGGATTTTTAG
AGCACCGGGAGAGCTGCTTATTTTTTGTTGTTGGGGCGGGTCTTTTGATA
GCCTCTCGGTGTTCTCGCGTCCCCTCCCGGTGATCAATCGTTGCCAACGC
GAGACGGAGGACATTTTTTCCCTACTGCCTTGGCCGCCCTGCCTTCGTTT
GCTGCCAACAACGCAGATATGACGCGTTTTTGGCAGTTTCGCTACCCTGT
AATAGTTATTAGGTAGTTATTATTATCCTGCTATCCAGGAAGAATCCCCC
GACCGTTTTCCACCCCGGGTTTCCATGGAAGAACGGAGGATAGAAGGAAG
GGATTTGGGTAGTCGCAGAAAAATCTACAGTAGATGCTTTTGGGGGTGTC
GCGAAGTCGAGCACCTGAGCGGAGTGGCGACCCCGACCATGCCGGCTAGC
ACACGGTAGGTGAGAAGAGTTCGGCAGAACGGGGTGATTGTGCAAGATTT
GGGGGAAGGTTAACGGGGAGAACGGCGGTCTGGGAGTGGAAGATGCAGCG
GAGGGGTGCTACGTTTTTTTGCTTGCGTAGCGCTCGGGCGGAGGATCCTC
TCGACATCAGTATACCGTACCTAGCGAACGCTTCAAACTTCATGTGTAGC
TCTGATCGTGATCGTACGCGTAATGCTGCCACTTTGTGAGTACAATGTGA
GTATATCATAAGAGTCGCGCCGATAGATCTGCCTTCGAGGCGATGCTGCG
CTGCAAGTTGCAGGGTACGGCGTTGTTCTTTACTAGGAGCGAGTACAAAC
GCCACTGCTGAAAGTTAGAGAGTGTGTTACAGTATGCCACCGGTACATCG
CGTTGCGTGTGATGGCCACACATATAGGTGGTTGAGCTTCGCTTCCTCCC
GCTCTCCCGTCGTAGACTATGGCCACTAAATAACCATCCTTACTATTAAT
AGAAGTAAGCTCACGACCTCTGTGCTATTAACAACATTTTTCTTTGCGGT
TACCAGCTAGATTACTCCACGGGGGACGAGAACACGCTGCAGGCATACGA
TCCATTTGCTATCCATTTACTTGCGTATGACGTATCAGGTGCCGACGGGA
AAGGGCTGAACAATGCTCTCGTAAGAACGGCCTTGGTCGGCCTTGCCCTC
GCGCTGCTGTGGAGGGCCGCACGTCTTGCCGCCGCCGCCCTTCGAAGGTT
TCCAGAGACGGAGGCATTGATCTATGCGGAGGGCTACTCCGTCGTCGGGT
GAACAGCCTTCCAGGAGGGGTCGAGAGGATGGATGCCACTCTTACCGTTC
GAATATCTGCACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig756:1925..5289-

>mRNA_H-elongata_contig756.15242.1 ID=mRNA_H-elongata_contig756.15242.1|Name=mRNA_H-elongata_contig756.15242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig756:1925..5289- (Himanthalia elongata Himel1 dioecious)
GACTTTCGTTGCTGCTGCCGTGGCGTGGCTAGTCGCGATGCGCTTGCGCG
CCCGGAGGGTTCTTCGGGATGGTGGACTTTCGTTGCTGCTGCCGTGGCGT
GGCTAGTCGCGATGCGCTTGCGCGCCCGGAGGGTTCTTCGGGATGGTGGT
GCCGACGGGAAAGGGCTGAACAATGCTCTCGTAAGAACGGCCTTGGTCGG
CCTTGCCCTCGCGCTGCTGTGGAGGGCCGCACGTCTTGCCGCCGCCGCCC
TTCGAAGGTTTCCAGAGACGGAGGCATTGATCTATGCGGAGGGCTACTCC
GTCGTCGGGTGAACAGCCTTCCAGGAGGGGTCGAGAGGATGGATGCCACT
CTTACCGTTCGAATATCTGCACTAGTGCCGACGGGAAAGGGCTGAACAAT
GCTCTCGTAAGAACGGCCTTGGTCGGCCTTGCCCTCGCGCTGCTGTGGAG
GGCCGCACGTCTTGCCGCCGCCGCCCTTCGAAGGTTTCCAGAGACGGAGG
CATTGATCTATGCGGAGGGCTACTCCGTCGTCGGGTGAACAGCCTTCCAG
GAGGGGTCGAGAGGATGGATGCCACTCTTACCGTTCGAATATCTGCACTA
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