mRNA_H-elongata_contig75546.15241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75546.15241.1
Unique NamemRNA_H-elongata_contig75546.15241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75546.15241.1 vs. uniprot
Match: D7FMS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMS2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 MDVLREGIKAVAVGVSGSKPIPEDLVDPLIR 93
            MDVL++GIKAVAVGVSGSKPIPEDLV PLI+
Sbjct:   52 MDVLKDGIKAVAVGVSGSKPIPEDLVSPLIQ 82
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BLAST of mRNA_H-elongata_contig75546.15241.1 vs. uniprot
Match: A0A7S1MXN6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MXN6_HEMAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.230e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 MDVLREGIKAVAVGVSGSKPIPEDLVDPLIRV 96
            M VLREGIK+V VGV GSKPI EDLVDPL  +
Sbjct:  100 MSVLREGIKSVGVGVKGSKPISEDLVDPLSEI 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75546.15241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMS2_ECTSI1.550e-887.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1MXN6_HEMAN1.230e-675.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75546contigH-elongata_contig75546:2490..2603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.1376727-CDS-H-elongata_contig75546:2489..26031622931161.1376727-CDS-H-elongata_contig75546:2489..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75546 2490..2603 -
1691679723.4125638-CDS-H-elongata_contig75546:2489..26031691679723.4125638-CDS-H-elongata_contig75546:2489..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75546 2490..2603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75546.15241.1prot_H-elongata_contig75546.15241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75546 2490..2603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75546.15241.1

>prot_H-elongata_contig75546.15241.1 ID=prot_H-elongata_contig75546.15241.1|Name=mRNA_H-elongata_contig75546.15241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MDVLREGIKAVAVGVSGSKPIPEDLVDPLIRVRAERFE
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mRNA from alignment at H-elongata_contig75546:2490..2603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75546.15241.1 ID=mRNA_H-elongata_contig75546.15241.1|Name=mRNA_H-elongata_contig75546.15241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig75546:2490..2603- (Himanthalia elongata Himel1 dioecious)
ATGGACGTGCTAAGGGAGGGCATCAAGGCAGTTGCAGTGGGGGTTAGCGG
TAGCAAACCCATCCCAGAAGACCTGGTCGATCCGCTAATACGGGTGAGAG
CTGAGAGGTTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig75546:2490..2603-

>mRNA_H-elongata_contig75546.15241.1 ID=mRNA_H-elongata_contig75546.15241.1|Name=mRNA_H-elongata_contig75546.15241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig75546:2490..2603- (Himanthalia elongata Himel1 dioecious)
ATGGACGTGCTAAGGGAGGGCATCAAGGCAGTTGCAGTGGGGGTTAGCGG
TAGCAAACCCATCCCAGAAGACCTGGTCGATCCGCTAATACGGGTGAGAG
CTGAGAGGTTCGAGATGGACGTGCTAAGGGAGGGCATCAAGGCAGTTGCA
GTGGGGGTTAGCGGTAGCAAACCCATCCCAGAAGACCTGGTCGATCCGCT
AATACGGGTGAGAGCTGAGAGGTTCGAG
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