mRNA_H-elongata_contig75532.15238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75532.15238.1
Unique NamemRNA_H-elongata_contig75532.15238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75532.15238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75532contigH-elongata_contig75532:148..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.912517-UTR-H-elongata_contig75532:147..3231622931160.912517-UTR-H-elongata_contig75532:147..323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75532 148..323 +
1691679723.3167884-UTR-H-elongata_contig75532:147..3231691679723.3167884-UTR-H-elongata_contig75532:147..323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75532 148..323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.9312563-CDS-H-elongata_contig75532:323..6261622931160.9312563-CDS-H-elongata_contig75532:323..626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75532 324..626 +
1691679723.3257773-CDS-H-elongata_contig75532:323..6261691679723.3257773-CDS-H-elongata_contig75532:323..626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75532 324..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75532.15238.1prot_H-elongata_contig75532.15238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75532 324..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75532.15238.1

>prot_H-elongata_contig75532.15238.1 ID=prot_H-elongata_contig75532.15238.1|Name=mRNA_H-elongata_contig75532.15238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MSRVGWFDGGSTVPYTTKHSRPYPQKTRTQKQSMLRTNRDTWECAAQFTS
WGEKSLVQYRTVPSKQCAHTARHPGCDICERDRVRLYSFVHDARTCSETD
R
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mRNA from alignment at H-elongata_contig75532:148..626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75532.15238.1 ID=mRNA_H-elongata_contig75532.15238.1|Name=mRNA_H-elongata_contig75532.15238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=479bp|location=Sequence derived from alignment at H-elongata_contig75532:148..626+ (Himanthalia elongata Himel1 dioecious)
AGCTGGTTCGAAGGTCTGGTGGAGGCTCCAAGCTTCGGAGACTAGAATAT
ATGTGCAGCACTCTTGCCCTAAAAAAAAAGGCGATTATGATCACACGGCT
TGTTGTCCACGACGAGACACGAAACGAAATCTTTGAAGGTCTCTCTGTAG
TGACCGGTATACATTGAGATAGATAGATGTCTAGAGTAGGTTGGTTTGAC
GGTGGATCCACTGTACCGTATACAACAAAACACTCACGCCCATACCCCCA
AAAAACTCGAACTCAAAAGCAAAGCATGCTTCGCACAAACCGGGATACTT
GGGAGTGTGCGGCGCAGTTTACATCATGGGGGGAGAAGAGTCTAGTACAG
TATCGTACCGTGCCGTCCAAACAATGTGCCCACACGGCGAGGCATCCCGG
CTGCGACATCTGTGAACGCGATAGAGTTAGGTTGTATTCCTTTGTGCATG
ACGCACGTACATGCAGTGAAACAGACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig75532:148..626+

>mRNA_H-elongata_contig75532.15238.1 ID=mRNA_H-elongata_contig75532.15238.1|Name=mRNA_H-elongata_contig75532.15238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig75532:148..626+ (Himanthalia elongata Himel1 dioecious)
ATGTCTAGAGTAGGTTGGTTTGACGGTGGATCCACTGTACCGTATACAAC
AAAACACTCACGCCCATACCCCCAAAAAACTCGAACTCAAAAGCAAAGCA
TGCTTCGCACAAACCGGGATACTTGGGAGTGTGCGGCGCAGTTTACATCA
TGGGGGGAGAAGAGTCTAGTACAGTATCGTACCGTGCCGTCCAAACAATG
TGCCCACACGGCGAGGCATCCCGGCTGCGACATCTGTGAACGCGATAGAG
TTAGGTTGTATTCCTTTGTGCATGACGCACGTACATGCAGTGAAACAGAC
AGGATGTCTAGAGTAGGTTGGTTTGACGGTGGATCCACTGTACCGTATAC
AACAAAACACTCACGCCCATACCCCCAAAAAACTCGAACTCAAAAGCAAA
GCATGCTTCGCACAAACCGGGATACTTGGGAGTGTGCGGCGCAGTTTACA
TCATGGGGGGAGAAGAGTCTAGTACAGTATCGTACCGTGCCGTCCAAACA
ATGTGCCCACACGGCGAGGCATCCCGGCTGCGACATCTGTGAACGCGATA
GAGTTAGGTTGTATTCCTTTGTGCATGACGCACGTACATGCAGTGAAACA
GACAGG
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