mRNA_H-elongata_contig75499.15233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75499.15233.1
Unique NamemRNA_H-elongata_contig75499.15233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: D7G2C0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2C0_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 1.220e-73
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P  KAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSV+FSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA
Sbjct:  242 FPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 349
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A836CC21_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC21_9STRA)

HSP 1 Score: 224 bits (570), Expect = 6.820e-71
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P  K+FGTGSDDSSCRLFDMRCYGE NYFGNDKILCGITSV+FSRSGRLLFAGYDDYNCYVWDVT++TG+PAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA
Sbjct:  244 FPDGKSFGTGSDDSSCRLFDMRCYGEVNYFGNDKILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTSNTGMPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 351
[Close]
BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A3R6Z757_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R6Z757_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.150e-57
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P   A GTGSDDSSCRLFD+R YGE N F NDKILCGITSVS+S+SGR +FAGYDDYNCY WDV ++TG   YQL GHENRVSCLGV+P G+ALCTGSWDTLLK+WA
Sbjct:  251 FPDGNALGTGSDDSSCRLFDLRAYGELNNFSNDKILCGITSVSYSKSGRFMFAGYDDYNCYCWDVLSNTGAHVYQLTGHENRVSCLGVSPSGQALCTGSWDTLLKVWA 358
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A7S2HG74_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HG74_9STRA)

HSP 1 Score: 186 bits (471), Expect = 6.010e-56
Identity = 86/109 (78.90%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQL-AGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P  KAFGTGSDDS+CRLFDMRCYGE N FGND+ILCGITSV FS+SGRLLFAGYDDYN  VWDV ++    A+QL   HENRVSCLGVNPKG+ALCTGSWDTLLKIWA
Sbjct:  245 FPDGKAFGTGSDDSTCRLFDMRCYGEVNRFGNDRILCGITSVGFSKSGRLLFAGYDDYNTIVWDVLSTGKQQAFQLHQPHENRVSCLGVNPKGDALCTGSWDTLLKIWA 353
[Close]
BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A6V1KDD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KDD3_HETAK)

HSP 1 Score: 185 bits (470), Expect = 7.270e-56
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P   AFGTGSDDSSCR+FDMRCYGE N FGND+ILCGITSVSFS+SGRLLFAGYDDYN YVWD   +     ++L GH+NRVSCLGVNP GEAL TGSWDTLLKIWA
Sbjct:  240 FPDGFAFGTGSDDSSCRMFDMRCYGEVNQFGNDRILCGITSVSFSKSGRLLFAGYDDYNSYVWDTLKNDPSETFKLQGHDNRVSCLGVNPTGEALVTGSWDTLLKIWA 347
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A397FXD3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397FXD3_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.530e-54
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P   A GTGSDDSSCRLFD+R YGE N F NDKILCGITSVS+S+SGR +FAGYDDYNCY WDV ++TG   YQL GHENRVSCLGV+P G+ALCTGSWDTLLK+WA
Sbjct:  606 FPDGNALGTGSDDSSCRLFDLRAYGELNNFSNDKILCGITSVSYSKSGRFMFAGYDDYNCYCWDVLSNTGAHVYQLTGHENRVSCLGVSPSGQALCTGSWDTLLKVWA 713
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A7R9Z4N3_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4N3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.690e-52
Identity = 80/109 (73.39%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAG-HENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P   AFGTGSDDS+CRLFDMRCYGE N F ++KILCGITSV+FSRSGRLLFAGYDD+NCY WD  ++    A+QL   H+NRVSCLGV+P G ALCTGSWDTLLKIWA
Sbjct:  244 FPGGHAFGTGSDDSTCRLFDMRCYGEVNKFAHEKILCGITSVAFSRSGRLLFAGYDDFNCYSWDTLSNGKNHAFQLPQPHDNRVSCLGVSPNGNALCTGSWDTLLKIWA 352
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A482SP31_9ARCH (WD40 repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP31_9ARCH)

HSP 1 Score: 166 bits (419), Expect = 2.980e-50
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P  K  GTGSDD++CR FD+R  GE + F +D I+CGITSV+FSRSGR+LFAGYDDYNC  WDV  ST    YQL GHENRVSCL + P GEALCTGSWDT+LKIWA
Sbjct:   71 FPDGKGIGTGSDDTTCRFFDIRSCGEVSQFRSDNIVCGITSVTFSRSGRILFAGYDDYNCLGWDVLGSTDKHHYQLQGHENRVSCLDMAPSGEALCTGSWDTMLKIWA 178
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BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A7R9U5X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5X6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.250e-50
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAY-QLAGHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P  K   +GSDD++CRLFDMR Y + N F ++KILCG+TSVSFSRSGRLLFAGYDDY   VWD + S+  PA+  L GHENRVSCLGV+P G+ALCTGSWDTLLKIWA
Sbjct:   28 FPDSKGLASGSDDATCRLFDMRSYSQLNDFASEKILCGVTSVSFSRSGRLLFAGYDDYTNCVWDASLSSFSPAFGSLQGHENRVSCLGVSPNGDALCTGSWDTLLKIWA 136
[Close]
BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Match: A0A6U5JG09_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5JG09_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.430e-49
Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLA-GHENRVSCLGVNPKGEALCTGSWDTLLKIWA 324
            +P   +FGTGSDDSSCRLFD+RCY + N F +DKILCGITSV+FS+SGR+LFAGY+D+N + WD  +    PAY L  GHENRVSC+GV+P+G+ALCTGSWD  LKIWA
Sbjct:  243 FPDGNSFGTGSDDSSCRLFDLRCYNQVNSFVHDKILCGITSVAFSKSGRILFAGYEDFNTFAWDTLSDGTAPAYSLKDGHENRVSCVGVSPRGDALCTGSWDNSLKIWA 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75499.15233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C0_ECTSI1.220e-7396.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CC21_9STRA6.820e-7191.67WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A3R6Z757_9STRA2.150e-5775.93Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S2HG74_9STRA6.010e-5678.90Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V1KDD3_HETAK7.270e-5676.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A397FXD3_9STRA1.530e-5475.93Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A7R9Z4N3_9STRA4.690e-5273.39Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A482SP31_9ARCH2.980e-5068.52WD40 repeat domain-containing protein n=1 Tax=arch... [more]
A0A7R9U5X6_9STRA3.250e-5068.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U5JG09_9STRA6.430e-4966.97Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75499contigH-elongata_contig75499:281..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue6.5e-59
Seed eggNOG ortholog2880.D7G2C0
Preferred nameGNB1
KEGG koko:K04536,ko:K04537,ko:K04538,ko:K07825
KEGG Pathwayko04011,ko04014,ko04062,ko04151,ko04371,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04744,ko04926,ko05032,ko05034,ko05167,ko05200,map04011,map04014,map04062,map04151,map04371,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04744,map04926,map05032,map05034,map05167,map05200
GOsGO:0000132,GO:0000187,GO:0000226,GO:0000278,GO:0000749,GO:0000750,GO:0001101,GO:0001403,GO:0001654,GO:0001666,GO:0001667,GO:0001750,GO:0001775,GO:0001917,GO:0001932,GO:0001934,GO:0002009,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0003007,GO:0003008,GO:0003013,GO:0003365,GO:0003371,GO:0003379,GO:0003380,GO:0003674,GO:0003824,GO:0003924,GO:0005246,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005834,GO:0005886,GO:0005929,GO:0005937,GO:0006109,GO:0006457,GO:0006873,GO:0006874,GO:0006875,GO:0006884,GO:0006915,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007166,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0007191,GO:0007200,GO:0007204,GO:0007212,GO:0007213,GO:0007223,GO:0007264,GO:0007265,GO:0007267,GO:0007275,GO:0007369,GO:0007398,GO:0007399,GO:0007405,GO:0007423,GO:0007498,GO:0007507,GO:0007584,GO:0007596,GO:0007599,GO:0007600,GO:0007602,GO:0007603,GO:0007606,GO:0008015,GO:0008081,GO:0008092,GO:0008104,GO:0008150,GO:0008217,GO:0008219,GO:0008283,GO:0008356,GO:0008361,GO:0009267,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009606,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009893,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010470,GO:0010525,GO:0010528,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010657,GO:0010658,GO:0010659,GO:0010675,GO:0010817,GO:0010906,GO:0012501,GO:0014070,GO:0016020,GO:0016043,GO:0016055,GO:0016056,GO:0016247,GO:0016462,GO:0016477,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0017145,GO:0019216,GO:0019218,GO:0019220,GO:0019222,GO:0019236,GO:0019725,GO:0019897,GO:0019898,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0022008,GO:0022402,GO:0022603,GO:0022607,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030168,GO:0030334,GO:0030335,GO:0030425,GO:0030447,GO:0030507,GO:0030587,GO:0030865,GO:0030866,GO:0030952,GO:0031090,GO:0031136,GO:0031137,GO:0031139,GO:0031152,GO:0031234,GO:0031253,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031682,GO:0031982,GO:0032005,GO:0032147,GO:0032268,GO:0032270,GO:0032350,GO:0032501,GO:0032502,GO:0032535,GO:0032870,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033273,GO:0033554,GO:0033674,GO:0033993,GO:0034694,GO:0034695,GO:0035556,GO:0035567,GO:0035690,GO:0036267,GO:0036293,GO:0036294,GO:0036445,GO:0036477,GO:0040001,GO:0040007,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0042060,GO:0042074,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042493,GO:0042578,GO:0042592,GO:0042594,GO:0042622,GO:0042995,GO:0043005,GO:0043010,GO:0043085,GO:0043087,GO:0043209,GO:0043226,GO:0043227,GO:0043326,GO:0043327,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043519,GO:0043547,GO:0043549,GO:0043577,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044093,GO:0044182,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044441,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0044764,GO:0044877,GO:0045165,GO:0045176,GO:0045595,GO:0045598,GO:0045859,GO:0045860,GO:0045937,GO:0045995,GO:0046578,GO:0046662,GO:0046999,GO:0047391,GO:0048103,GO:0048383,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0048880,GO:0048881,GO:0048882,GO:0048883,GO:0048915,GO:0048916,GO:0048920,GO:0048925,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050801,GO:0050817,GO:0050877,GO:0050878,GO:0050896,GO:0050909,GO:0051020,GO:0051056,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051259,GO:0051270,GO:0051272,GO:0051291,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051480,GO:0051493,GO:0051593,GO:0051606,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0055057,GO:0055059,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060026,GO:0060027,GO:0060041,GO:0060170,GO:0060255,GO:0060359,GO:0060429,GO:0061343,GO:0061351,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070206,GO:0070208,GO:0070482,GO:0070542,GO:0070783,GO:0070887,GO:0071214,GO:0071229,GO:0071242,GO:0071310,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071407,GO:0071417,GO:0071444,GO:0071453,GO:0071456,GO:0071478,GO:0071482,GO:0071495,GO:0071496,GO:0071840,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072359,GO:0072503,GO:0072507,GO:0080090,GO:0090066,GO:0090181,GO:0090207,GO:0090702,GO:0095500,GO:0097305,GO:0097306,GO:0097381,GO:0097447,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098722,GO:0098743,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0099106,GO:0099120,GO:0104004,GO:0120025,GO:0120038,GO:0198738,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902533,GO:1902610,GO:1902622,GO:1902624,GO:1902850,GO:1903047,GO:1903664,GO:1903665,GO:1903725,GO:1903831,GO:1905114,GO:1905144,GO:1905145,GO:1905360,GO:2000026,GO:2000145,GO:2000147,GO:2000241,GO:2000243
EggNOG free text desc.G-protein gamma-subunit binding
EggNOG OGsKOG0286@1,KOG0286@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75499.15233.1prot_H-elongata_contig75499.15233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75499 281..1621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.5469508-CDS-H-elongata_contig75499:280..3821622931160.5469508-CDS-H-elongata_contig75499:280..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75499 281..382 +
1691679723.1580982-CDS-H-elongata_contig75499:280..3821691679723.1580982-CDS-H-elongata_contig75499:280..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75499 281..382 +
1622931160.5606027-CDS-H-elongata_contig75499:914..10521622931160.5606027-CDS-H-elongata_contig75499:914..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75499 915..1052 +
1691679723.1734827-CDS-H-elongata_contig75499:914..10521691679723.1734827-CDS-H-elongata_contig75499:914..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75499 915..1052 +
1622931160.573476-CDS-H-elongata_contig75499:1534..16211622931160.573476-CDS-H-elongata_contig75499:1534..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75499 1535..1621 +
1691679723.182567-CDS-H-elongata_contig75499:1534..16211691679723.182567-CDS-H-elongata_contig75499:1534..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75499 1535..1621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75499.15233.1

>prot_H-elongata_contig75499.15233.1 ID=prot_H-elongata_contig75499.15233.1|Name=mRNA_H-elongata_contig75499.15233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
YPFCKAFGTGSDDSSCRLFDMRCYGEANYFGNDKILCGITSVSFSRSGRL
LFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSW
DTLLKIWA*
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mRNA from alignment at H-elongata_contig75499:281..1621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75499.15233.1 ID=mRNA_H-elongata_contig75499.15233.1|Name=mRNA_H-elongata_contig75499.15233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-elongata_contig75499:281..1621+ (Himanthalia elongata Himel1 dioecious)
TACCCGTTTTGTAAGGCGTTCGGAACGGGATCGGACGATTCAAGCTGCCG
TTTGTTCGACATGCGATGCTACGGCGAGGCCAATTACTTTGGTAATGACA
AGGTAAAAGACGGACAGTAGTTTGCTGGTCTAGTACTCTCGTTAACAGGT
GTCACAAACCAGGAGGAGAGAATGACATCCCGGACGAGAGAAGATAAAGG
GAGGGTATGAGCTTTGTCGCAGCGCTTAGTTTGTGCAGAAAACTCCTCCA
ACGGAGGTACTAGACAATAGTGCCATCGGTAGAGTAGTCTATGTAACCCC
CCCCCCGCATCTCTGAACGAGGTTTGGTATCGCTGGGAGCGTCACTCGTA
GAAATGGATAAGAATGAAGTCGACGATACGATGAACGCTGACTTGATTCG
AGGTTTCCTATGTACTTTGCTTGCTTCCAAAACGAAAGCCCCCCTCCCCC
CATCCCCCCTTGCCATGATTATTTTTCTTCATTTTTCTGCATGTTTTTTT
TCTCATTTTTCTCATTTAAAAAAACTAAATAAATCGTCCCATCGTCCAAA
TCGCAACGTTGCCTAAAAAAAAGCCCCCTTTCGCGCTCGCACGCACGATC
TTCCCTTTCTTAACCCCCCCCAACTTTCCCTCAGATCTTGTGCGGTATCA
CATCGGTATCATTTTCACGAAGCGGGCGTCTTCTGTTCGCGGGCTATGAC
GACTACAACTGCTACGTCTGGGACGTGACGAACAGCACGGGTATCCCGGC
CTACCAGCTCGCCGGCCACGAGGTAAGATGATCGAACGCTTTCCTTGATC
GTGACTGTGCCAATGTTTTTCTTTGCGGGAGATTGTTTCCTCCGCCGCGG
CCTTCGGATGCTGAATATAGGGTTACATGATTATACACCAAAAACAAGTA
ACCAGGTAGTGCATAACAAAAATGCATAACTACAGCCGACATCACGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTTTCCC
CCCCCCCCCCCCGCGGGGACCTTTTCTTTTTTGTTTTTTTTGTTTTTTTT
CTTTTNNNNNNNNNNCAGGTAGTGCATAACAAAAATGCATAACTACAGCC
GACATCACGCCCCCACCCCCCACCCCCCACCCCCCACCCCCACAGCCGTT
CTGATTGCCCGCCACACCTGGTGTGAATTTTCGTTCTTTTTTGTTTGCTT
GCGTTGACTTTTCGTTTTACTTTTGATCGGCCTCTTCTTCCTTCCCTCCC
GCAGAACCGCGTCTCGTGTTTGGGAGTGAATCCCAAAGGAGAGGCCCTGT
GCACAGGATCATGGGATACTCTCCTCAAGATTTGGGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig75499:281..1621+

>mRNA_H-elongata_contig75499.15233.1 ID=mRNA_H-elongata_contig75499.15233.1|Name=mRNA_H-elongata_contig75499.15233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig75499:281..1621+ (Himanthalia elongata Himel1 dioecious)
TACCCGTTTTGTAAGGCGTTCGGAACGGGATCGGACGATTCAAGCTGCCG
TTTGTTCGACATGCGATGCTACGGCGAGGCCAATTACTTTGGTAATGACA
AGTACCCGTTTTGTAAGGCGTTCGGAACGGGATCGGACGATTCAAGCTGC
CGTTTGTTCGACATGCGATGCTACGGCGAGGCCAATTACTTTGGTAATGA
CAAGATCTTGTGCGGTATCACATCGGTATCATTTTCACGAAGCGGGCGTC
TTCTGTTCGCGGGCTATGACGACTACAACTGCTACGTCTGGGACGTGACG
AACAGCACGGGTATCCCGGCCTACCAGCTCGCCGGCCACGAGATCTTGTG
CGGTATCACATCGGTATCATTTTCACGAAGCGGGCGTCTTCTGTTCGCGG
GCTATGACGACTACAACTGCTACGTCTGGGACGTGACGAACAGCACGGGT
ATCCCGGCCTACCAGCTCGCCGGCCACGAGAACCGCGTCTCGTGTTTGGG
AGTGAATCCCAAAGGAGAGGCCCTGTGCACAGGATCATGGGATACTCTCC
TCAAGATTTGGGCGTGAAACCGCGTCTCGTGTTTGGGAGTGAATCCCAAA
GGAGAGGCCCTGTGCACAGGATCATGGGATACTCTCCTCAAGATTTGGGC
GTGA
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