mRNA_H-elongata_contig75498.15232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75498.15232.1
Unique NamemRNA_H-elongata_contig75498.15232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Match: D8LE49_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE49_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 4.380e-72
Identity = 116/177 (65.54%), Postives = 145/177 (81.92%), Query Frame = 1 
Query:   67 HTGPAMLNSFKPPSVELDPNISVSVGPTVLMKSGQWVTITYTGIESWRFPDAFVAAFSPGSVLDDPETVTEVAPIKYQYLTAERPLAGDG---DISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVATTKERVIFARPYEVMHLHLALTSEAYSMRVSWVTGAASQSPAVRYRQ 588
            HTGP+ L++ +PP+  LDP+I++ VGPT+L +SGQWVT++++GIESW FPDAFVAAFSPG+ LD P TV EVAPIKYQ+LTAE+P  G G   +   V++LRFRLLN+RD EGY FGLFKGG+  PVLVA T E V FA+P+EV+HLHLALTS+  SMRVSWVTG ASQ+PAV +R+
Sbjct:   21 HTGPSKLSAIQPPTFALDPDITLEVGPTLLFESGQWVTVSWSGIESWMFPDAFVAAFSPGTALDYPATVKEVAPIKYQFLTAEKPFPGVGHEAETGAVESLRFRLLNLRDAEGYRFGLFKGGVEDPVLVARTTEAVTFAQPFEVLHLHLALTSDVDSMRVSWVTGEASQAPAVMFRE 197
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BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Match: A0A835YU01_9STRA (Purple acid phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU01_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.290e-25
Identity = 79/188 (42.02%), Postives = 105/188 (55.85%), Query Frame = 1 
Query:   76 PAMLNSFKPPSV--ELDPNISVSVGPTVLMKSGQWVTITYTGIESWRFPDAFVAAFSPGSVLDDPETVTEVAPIKYQYLTAERPLAGDGDISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVATT----KERVI-----------FARPY-EVMHLHLALTSEAYSMRVSWVTGA--ASQSPAVR 579
            P  L+ FK  +    L+  I++SV PT L  SG WV +T++G+      + F+A +SP S L D   VT  AP+KYQ+L+A         +     LRFRLLN+RD EGY+ GLF+GG+  PV+VA T    K + +           FA P+ EV+H HLALT     MRVSWVTG   A  SP+ R
Sbjct:   32 PVYLDMFKTEAAVTALEEGIALSVTPTELPSSGSWVEVTWSGLFGTA-GNEFIAWYSPASALSD---VTAAAPVKYQFLSANCTAPCSEGV-----LRFRLLNLRDEEGYAAGLFRGGLDAPVIVALTTGGDKNQAVTNXXXXXXXXXFANPHAEVLHPHLALTGVPGEMRVSWVTGTPPAGVSPSQR 210
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BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Match: A0A388LFV4_CHABU (Purple acid phosphatase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LFV4_CHABU)

HSP 1 Score: 79.0 bits (193), Expect = 1.170e-13
Identity = 59/185 (31.89%), Postives = 99/185 (53.51%), Query Frame = 1 
Query:   52 LGSRA-HTGPAMLNSFKPPSVE-----LDPNISVSVGPTVLMKSGQWVTITYTGIESWRFPDAFVAAFSPGSVLDDPETVTEVAPIKYQYLT--AERPLAGDGDISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVATTKERVIFARPYEVMHLHLALTSEAYSMRVSWVTGAASQSPAVRY 582
            LG++A H  P ++N  +   V      L+  + +SV P++L++SG+WVT+++ G++     D ++A + P     DP   ++VAP+KY+      +    G G +      +FRLLNMRD   Y F L +     PV+++ +   V F+   E   +HLALT +   MRV+W T    ++P VR+
Sbjct:   80 LGTKALHDDPFVINRLEVIPVRNITTRLEHGVEISVSPSMLLRSGEWVTVSWKGVKEPSVYD-WIAVYVPADA--DP---SKVAPVKYKMACNHPDHVKYGSGSV------QFRLLNMRDD--YRFVLVRNWGTKPVVISRSNT-VAFSNYDEPTQIHLALTGKQGEMRVTWTTRGRGRAPYVRW 249
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BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Match: L8H162_ACACA (Purple acid phosphatase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H162_ACACA)

HSP 1 Score: 73.6 bits (179), Expect = 8.020e-12
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 1 
Query:  127 ISVSVGPTVLMKSGQWVTITYTGIESWRFPDAFVAAFSPGSVLDDPETVTEVAPIKYQYLTAERPLAGDGDISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVATTKERVIFARPYEVMHLHLALTSEAYSMRVSWVT 549
            IS+   P  L +SG+WV +++ G++S    D ++  +SP +      +VT   PIKY++          G      ++RFRL NMR    Y+F  F+ GI  P LVAT+   V F    E M   L LT     MRV W T
Sbjct:   49 ISIGATPATLQRSGEWVVVSWRGVDSPSAGD-WIGVYSPANA-----SVTTSVPIKYKFADESTNYLSTG----AGSVRFRLTNMR--ADYAFHFFRHGITRPTLVATSNA-VTFVNYNEPMQGRLMLTGRQNEMRVMWTT 176
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BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Match: A0A5J4XMT2_9CHLO (Purple acid phosphatase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XMT2_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 1.290e-10
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 1 
Query:  115 LDPNISVSVGPTVLMKSGQWVTITYTGIESWRFPDAFVAAFSPGSVLDDPETVTEVAPIKYQYLT--AERPLAGDGDISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVATTKERVIFARPYEVMHLHLALTSEAYSMRVSWVTGAASQSPAVRY 582
            LD  I +     +L +SGQWV IT+ G++  +  D ++A ++P +V     +V E +P+KYQ+    A     G G I      RFRLLN+R     +F   + G   PV VA   + +  A   E +  HLALT E   M + W T   SQ+P VR+
Sbjct:   42 LDDVIQLGTNHNLLRQSGQWVGITWKGVQDPQ-DDDYIALYAPANV-----SVYETSPVKYQWAVKAASHRAHGTGSI------RFRLLNLRTDMRIAF--IRNGFTFPV-VAAWGDVIRVANVNEPLQGHLALTGENSEMLIQWTTKN-SQAPEVRW 183
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BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Match: A0A176VHJ1_MARPO (Purple acid phosphatase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHJ1_MARPO)

HSP 1 Score: 60.8 bits (146), Expect = 1.930e-7
Identity = 52/166 (31.33%), Postives = 78/166 (46.99%), Query Frame = 1 
Query:  109 VELDPNISVSVGPTVLMKSGQWVTITYTGIESWRFPDA----FVAAFSPG----SVLDDPETVTEV--------APIKYQYLTAERP---LAGDGDISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVATTKERVIFARPYEVMHLHLALTSEAYSMRVSWVT 549
            +EL+   S+S  P +L   G+  T  Y  ++  R  +A    ++  FSP     S   +P+ V           AP+KY+Y     P    +G+G +S      FRL+NMR    YSFGLFKG + +PVL+A +   V F  P     + LA   E   + V+W +
Sbjct:   86 IELEDTASISASPDLLGAKGE--TAEYVTVKFRRAANAENTDWIGVFSPANFNASTCTEPDGVPSKDQFPKLCSAPVKYKYANFSSPNYVRSGEGSLS------FRLINMR--ADYSFGLFKGDVSNPVLLAVSNT-VSFTSPRAPSFMRLANGFEWNEITVTWTS 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75498.15232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LE49_ECTSI4.380e-7265.54Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YU01_9STRA2.290e-2542.02Purple acid phosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A388LFV4_CHABU1.170e-1331.89Purple acid phosphatase n=1 Tax=Chara braunii TaxI... [more]
L8H162_ACACA8.020e-1234.75Purple acid phosphatase n=1 Tax=Acanthamoeba caste... [more]
A0A5J4XMT2_9CHLO1.290e-1034.81Purple acid phosphatase n=1 Tax=Trebouxia sp. A1-2... [more]
A0A176VHJ1_MARPO1.930e-731.33Purple acid phosphatase n=2 Tax=Marchantia polymor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75498contigH-elongata_contig75498:413..1660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue2.3e-62
Seed eggNOG ortholog2880.D8LE49
KEGG koko:K22390
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
Ec32 ortholog descriptionPurple acid phosphatase, N-terminal
Ec32 orthologEc-00_000940.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons3
Model size588
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75498.15232.1prot_H-elongata_contig75498.15232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75498 413..1660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.4804547-CDS-H-elongata_contig75498:412..5141622931160.4804547-CDS-H-elongata_contig75498:412..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75498 413..514 -
1691679723.1256306-CDS-H-elongata_contig75498:412..5141691679723.1256306-CDS-H-elongata_contig75498:412..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75498 413..514 -
1622931160.4919891-CDS-H-elongata_contig75498:1102..12491622931160.4919891-CDS-H-elongata_contig75498:1102..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75498 1103..1249 -
1691679723.1376057-CDS-H-elongata_contig75498:1102..12491691679723.1376057-CDS-H-elongata_contig75498:1102..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75498 1103..1249 -
1622931160.5053573-CDS-H-elongata_contig75498:1321..16601622931160.5053573-CDS-H-elongata_contig75498:1321..1660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75498 1322..1660 -
1691679723.1474159-CDS-H-elongata_contig75498:1321..16601691679723.1474159-CDS-H-elongata_contig75498:1321..1660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75498 1322..1660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75498.15232.1

>prot_H-elongata_contig75498.15232.1 ID=prot_H-elongata_contig75498.15232.1|Name=mRNA_H-elongata_contig75498.15232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MRHSVGLAWASAALVSPLGSRAHTGPAMLNSFKPPSVELDPNISVSVGPT
VLMKSGQWVTITYTGIESWRFPDAFVAAFSPGSVLDDPETVTEVAPIKYQ
YLTAERPLAGDGDISTVQTLRFRLLNMRDPEGYSFGLFKGGIRHPVLVAT
TKERVIFARPYEVMHLHLALTSEAYSMRVSWVTGAASQSPAVRYRQ
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mRNA from alignment at H-elongata_contig75498:413..1660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75498.15232.1 ID=mRNA_H-elongata_contig75498.15232.1|Name=mRNA_H-elongata_contig75498.15232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-elongata_contig75498:413..1660- (Himanthalia elongata Himel1 dioecious)
ATGCGCCATTCGGTGGGGCTCGCGTGGGCGTCCGCAGCCTTGGTCTCGCC
CCTGGGTTCTCGAGCTCACACCGGTCCCGCGATGCTAAATTCCTTCAAGC
CGCCGAGCGTAGAGCTCGACCCCAACATAAGCGTTTCGGTGGGGCCCACG
GTGTTGATGAAAAGCGGACAGTGGGTGACCATCACGTACACAGGGATCGA
GTCCTGGAGGTTTCCCGACGCCTTCGTGGCGGCGTTTTCGCCGGGAAGCG
TGCTGGACGACCCCGAAACGGTTACGGAAGTCGCCCCGATCAAGTATCAG
TACCTCACGGCCGAGCGACCGCTTGCCGGCGATGGCGATGTCTCGGACAA
GGATAAAGACAAAAATACTGGCACGGACGGAGAAAAAGAAGAAGCAGAAG
AAGCTCGAGAGATAAGCACCGTGCAAACCCTAAGATTCCGACTGTTGAAC
ATGCGGGATCCTGAAGGATATTCGTTCGGCCTCTTCAAGGGCGGGATCCG
TCATCCAGTACTCGTTGCGACGACCAAGGAACGTGTGATCTTCGCACGCC
CGTACGAGGTGGGAGCTGGGTAGGAGGCAGGGAGAGTGGGGTACAGTATG
TTATGGTATGATATGGAACGGTATGATATGGTATTGTGTGTTATGGTATG
ATACGGTACCTCTCTCGGGCTTTGGACGACTGCTACTGCAGACCACATTT
TCTCACTGATGGGAGAGCACTCGTAGCACAGCAATCGTCGTTTCATGGAA
GATAAAAGTAAGATTTTAGGGAAGATTACGGATTTTAAAGTAAAATAAAT
GCCGAAGAATGCGATAGAACGGGCGTATCGATTCGTTCTAGGTCGCCCGA
CAACGCAGGAGAAAAATATCGCACCGACGCCGCTTTTGATCCCTCGACTG
TCCACAGGCTTTTCCTGTGAGAGGCCTGAACGGGACGCTCAATCTCCCTA
TCTTTGTTGTTCCTCAATCTCCTTCGGCGGCCTATCCGGCCAATTACCCG
ATCAATTAATTAGTCAATCAATTGATCAATCAATCAATTAATCAATCAAT
CAATTAATCAATCAATCGATTAATCGGTCCATCACCGGAAGAGATGATGC
ACCTGTACCTCGCTGATTTAAGGCGCCCCGCCCTTTGCCGATTTAGGTGA
TGCACTTGCACCTGGCCTTGACATCTGAGGCTTACTCCATGCGCGTCTCG
TGGGTCACCGGGGCCGCATCCCAGTCGCCCGCCGTGCGTTACCGCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig75498:413..1660-

>mRNA_H-elongata_contig75498.15232.1 ID=mRNA_H-elongata_contig75498.15232.1|Name=mRNA_H-elongata_contig75498.15232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig75498:413..1660- (Himanthalia elongata Himel1 dioecious)
ATGCGCCATTCGGTGGGGCTCGCGTGGGCGTCCGCAGCCTTGGTCTCGCC
CCTGGGTTCTCGAGCTCACACCGGTCCCGCGATGCTAAATTCCTTCAAGC
CGCCGAGCGTAGAGCTCGACCCCAACATAAGCGTTTCGGTGGGGCCCACG
GTGTTGATGAAAAGCGGACAGTGGGTGACCATCACGTACACAGGGATCGA
GTCCTGGAGGTTTCCCGACGCCTTCGTGGCGGCGTTTTCGCCGGGAAGCG
TGCTGGACGACCCCGAAACGGTTACGGAAGTCGCCCCGATCAAGTATCAG
TACCTCACGGCCGAGCGACCGCTTGCCGGCGATGGCGATATGCGCCATTC
GGTGGGGCTCGCGTGGGCGTCCGCAGCCTTGGTCTCGCCCCTGGGTTCTC
GAGCTCACACCGGTCCCGCGATGCTAAATTCCTTCAAGCCGCCGAGCGTA
GAGCTCGACCCCAACATAAGCGTTTCGGTGGGGCCCACGGTGTTGATGAA
AAGCGGACAGTGGGTGACCATCACGTACACAGGGATCGAGTCCTGGAGGT
TTCCCGACGCCTTCGTGGCGGCGTTTTCGCCGGGAAGCGTGCTGGACGAC
CCCGAAACGGTTACGGAAGTCGCCCCGATCAAGTATCAGTACCTCACGGC
CGAGCGACCGCTTGCCGGCGATGGCGATATAAGCACCGTGCAAACCCTAA
GATTCCGACTGTTGAACATGCGGGATCCTGAAGGATATTCGTTCGGCCTC
TTCAAGGGCGGGATCCGTCATCCAGTACTCGTTGCGACGACCAAGGAACG
TGTGATCTTCGCACGCCCGTACGAGATAAGCACCGTGCAAACCCTAAGAT
TCCGACTGTTGAACATGCGGGATCCTGAAGGATATTCGTTCGGCCTCTTC
AAGGGCGGGATCCGTCATCCAGTACTCGTTGCGACGACCAAGGAACGTGT
GATCTTCGCACGCCCGTACGAGGTGATGCACTTGCACCTGGCCTTGACAT
CTGAGGCTTACTCCATGCGCGTCTCGTGGGTCACCGGGGCCGCATCCCAG
TCGCCCGCCGTGCGTTACCGCCAAGTGATGCACTTGCACCTGGCCTTGAC
ATCTGAGGCTTACTCCATGCGCGTCTCGTGGGTCACCGGGGCCGCATCCC
AGTCGCCCGCCGTGCGTTACCGCCAA
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