mRNA_H-elongata_contig7543.15228.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7543.15228.1
Unique NamemRNA_H-elongata_contig7543.15228.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7543.15228.1 vs. uniprot
Match: D7G6B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B1_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 6.910e-63
Identity = 161/397 (40.55%), Postives = 226/397 (56.93%), Query Frame = 1 
Query:  385 FVQPATAQGFGFPPMQNSLGNFFQ-------ANPFGFS---PGVLGRPAGVQDGRYFVEHALPRPLTSSSGGGSSGVPVQA--RVRVRENTPAEEIKEEP-DTLYPTQEELSSVEILRSHGLDVDEAVRFLRQNGHNLQAAIQQAMETVTNRSDWHLEDRVRLESEKEKDRVAAQRRQDDMSLTVVGDIVPRFRESLLLDEKEGCAPFRRAVRQVSKGKEGWAPALSAFREKAVKLLFLEQKSVRWYRQNISQVRGYFRQVITRLEDFVQNRNTQ------TRGDGEAAEGKSGVEMPVFTGKANGNGANSDHDNEADTIKGSEFLTSCLHSEIEALEKILFMLPSTAGGVPDAFL-KCNDHTATLETDGIEEICHESADVSRSRRSSKRLVIALDD 1515
            F  PA   G GF  M    G F Q       ANPF ++   P  L   AG+ + R+    A+     SS+GG SSG P +A  R RVRE   A+E+KEEP D L P  EE+  V++LR HG++  +AV  LRQ+G+ +  A++ AME    R +    D  R+ESEKEKDR A Q++++D  L V+G+++P F +S+LL+ ++GC  FR+ V ++S G     P L  FRE A+ LLFLE+ + R Y +N  Q+R YF ++I R+++    R T+      ++G  E A+  S  E      +AN  G +S+ D E      +E LT+ +  E+EAL  IL+  P T GGVPDAFL K   H+ATLE DG+EE      D SRS RS   +VI +DD
Sbjct:   10 FAMPA-GPGAGF--MFQQQGAFAQHLQASGGANPFVYAAAAPQALPHAAGL-NARFLAGSAMAHSGASSAGGASSGAPQRASPRARVREGPSAQEVKEEPEDPLRPRPEEVGMVDMLRRHGVNTPDAVHCLRQSGNRVDVALRYAMEMKNTRHENRQTDMARVESEKEKDRAAEQQQEEDKILMVLGEVIPHFPKSILLNAEDGCTTFRQFVERLSAGD----PKLCDFRETAITLLFLERDAFRHYPENDRQIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTETAKRSSSCEREP---RANRCGDSSERDEE------TESLTARVREEVEALRSILYGFPKTPGGVPDAFLDKQAAHSATLERDGVEE----DHDHSRSARSEDPVVIDVDD 385
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7543.15228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6B1_ECTSI6.910e-6340.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7543contigH-elongata_contig7543:4782..8294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001200.1
Exons4
Model size1759
Cds size1416
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7543.15228.1prot_H-elongata_contig7543.15228.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7543 5020..8189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.072967-UTR-H-elongata_contig7543:4781..50191622931160.072967-UTR-H-elongata_contig7543:4781..5019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7543 4782..5019 -
1691679722.96574-UTR-H-elongata_contig7543:4781..50191691679722.96574-UTR-H-elongata_contig7543:4781..5019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7543 4782..5019 -
1622931160.164035-UTR-H-elongata_contig7543:8189..82941622931160.164035-UTR-H-elongata_contig7543:8189..8294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7543 8190..8294 -
1691679723.0160804-UTR-H-elongata_contig7543:8189..82941691679723.0160804-UTR-H-elongata_contig7543:8189..8294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7543 8190..8294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.0927808-CDS-H-elongata_contig7543:5019..54361622931160.0927808-CDS-H-elongata_contig7543:5019..5436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 5020..5436 -
1691679722.9762862-CDS-H-elongata_contig7543:5019..54361691679722.9762862-CDS-H-elongata_contig7543:5019..5436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 5020..5436 -
1622931160.1136878-CDS-H-elongata_contig7543:5708..58821622931160.1136878-CDS-H-elongata_contig7543:5708..5882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 5709..5882 -
1691679722.9864798-CDS-H-elongata_contig7543:5708..58821691679722.9864798-CDS-H-elongata_contig7543:5708..5882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 5709..5882 -
1622931160.1306238-CDS-H-elongata_contig7543:6214..65551622931160.1306238-CDS-H-elongata_contig7543:6214..6555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 6215..6555 -
1691679722.996593-CDS-H-elongata_contig7543:6214..65551691679722.996593-CDS-H-elongata_contig7543:6214..6555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 6215..6555 -
1622931160.1501648-CDS-H-elongata_contig7543:7705..81891622931160.1501648-CDS-H-elongata_contig7543:7705..8189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 7706..8189 -
1691679723.0065563-CDS-H-elongata_contig7543:7705..81891691679723.0065563-CDS-H-elongata_contig7543:7705..8189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 7706..8189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7543.15228.1

>prot_H-elongata_contig7543.15228.1 ID=prot_H-elongata_contig7543.15228.1|Name=mRNA_H-elongata_contig7543.15228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=472bp
MPKRKAEVNGREKSPRLPPPPPSHDEDDSDFCEIIEAPPKAAALVPSSIP
PQRSAVASPLTPAPLSDIFYQNLNSHRDHASMSSFAGLTQEMPFVQPATA
QGFGFPPMQNSLGNFFQANPFGFSPGVLGRPAGVQDGRYFVEHALPRPLT
SSSGGGSSGVPVQARVRVRENTPAEEIKEEPDTLYPTQEELSSVEILRSH
GLDVDEAVRFLRQNGHNLQAAIQQAMETVTNRSDWHLEDRVRLESEKEKD
RVAAQRRQDDMSLTVVGDIVPRFRESLLLDEKEGCAPFRRAVRQVSKGKE
GWAPALSAFREKAVKLLFLEQKSVRWYRQNISQVRGYFRQVITRLEDFVQ
NRNTQTRGDGEAAEGKSGVEMPVFTGKANGNGANSDHDNEADTIKGSEFL
TSCLHSEIEALEKILFMLPSTAGGVPDAFLKCNDHTATLETDGIEEICHE
SADVSRSRRSSKRLVIALDDD*
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mRNA from alignment at H-elongata_contig7543:4782..8294-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7543.15228.1 ID=mRNA_H-elongata_contig7543.15228.1|Name=mRNA_H-elongata_contig7543.15228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3513bp|location=Sequence derived from alignment at H-elongata_contig7543:4782..8294- (Himanthalia elongata Himel1 dioecious)
AAAATAGGAAGGTATTTGGTATTTCCTACACGAGGTTAGAGAAGCAGCAC
TAGCACAAATTTCAGCGGCTAGAACAACAATCAGCCACATACTCTAGCAT
TTGTTATGCCAAAGCGGAAGGCCGAAGTAAACGGGAGGGAAAAGTCGCCG
AGGCTGCCGCCGCCACCCCCTTCTCATGATGAAGATGACAGCGATTTCTG
TGAAATAATTGAAGCACCACCAAAAGCTGCCGCACTGGTCCCGAGCAGCA
TACCTCCGCAGCGATCCGCCGTTGCTTCACCTCTGACTCCGGCACCCCTC
TCAGACATTTTTTACCAGAACTTGAATTCTCATAGGGATCACGCCTCAAT
GAGTTCGTTCGCGGGTCTGACGCAGGAAATGCCGTTCGTGCAGCCAGCCA
CAGCACAGGGCTTCGGCTTCCCACCAATGCAAAATTCTCTTGGCAACTTC
TTTCAGGCAAACCCGTTCGGGTTCAGCCCTGGTGTGCTTGGCCGTCCAGC
TGGTGTACAGGATGGAAGATATTTCGTCGAACACGCGTTACCTCGACCAT
TGACTTCGTCTTCCGGTGGAGGATCTAGTGGAGTGCCGGGTAAGAAAATA
TGCCCGCACCAGGTAGTTAGAGCTATCCTGGGAAACGATGCCATTGTTTC
TGCCCCCCTAATTCGAGTATCCCGTGACATTCCACTATAGTAATACAGTA
GGAAAGCGGCCTCTTGATTTGTGTTGGAATACTAATTAAACCTTAATATT
TTTATATGAAAAAATGAGCAGACTAGATTTAAGAGAAACCAAAGCCCATG
TGGGCAAAACGGTGACATACATGCTGTAGTTACAAAGCTCTGTCCTAAGG
GGCAATCGTGTCGGTTTTCGGGAAGCATTCCTCCATATCAAGAGAAGCTA
CCCCTCGACTGCGGTACGAGGTAAATCTCTGGAATGACTCGATTTGTTTT
TCACCTTTCAAAATTGCCCACTTGCCATGTTTTTTGTTGATTAGGTATAT
AGAGGCTGCTCCTAAGACTACGTGAGATATTCCAGTGACGAGCTTGGTGG
CTCTTCTTGTCTCCAAAAAATATATATAAAAATGTGATCATCCAGCGAGA
ATTACAATTTAACCCTTTTGGAACTGGATTCCAAGTTTTATATTGAATTT
AGTATCTAAAAAACAGATCGAGTTCCATAGGGGTTAAAGCTCTGAAATAA
TGTTGAATTTTCTATATCCCCGGTAGCCGAACAGCGATGGGAAATTAAAA
CCTGTAGAGCCCACAGTCGGTCATACGCCGCTTTTGATTGGGCGATGATC
TAACAGTAAATTATGGAAAGCTGGGCTACTCTTGTAGCCGGGCTGCTGCC
ACTTCGAACCAATCAGGATCTAACAGGGTTTTCGATTCTCCGCATCCGCT
AAATACAGGTATATCCGCCAAATACATTGCCTTCCTTGTTGCCGAATATT
TATTCCCGTGTAATTTCTCCGCCCCATTGACGGTTAACTCCTTTCATCTG
GCTTGAGTTATCGCTCGTTCTCCTGTACATACAAGCACAACGCTCAACAG
CACAGTTACTTGTTTTGAAAGGAAACGTGATCGTGCTCCTTGAAATATTC
AAGTATGCCTTATTGTTGAATGCTGCCTAAACTTTTCACCATTTCCCCGC
TTTGACAGCTTGTTGCGGGCTACTTTAGCTCCTCCTGCTGATCTGTCTCT
CTTTCTGTGTTTTTTCTCTCTGTTTTGATATTGGAACAGTCCAAGCTCGA
GTACGGGTACGAGAAAATACGCCAGCCGAAGAAATAAAGGAGGAACCGGA
TACTTTGTACCCTACTCAAGAAGAGCTTTCGTCAGTAGAAATTCTCAGGT
CGCACGGGCTGGATGTGGACGAAGCGGTCCGATTTCTGAGGCAGAATGGT
CACAACTTGCAGGCAGCTATTCAGCAGGCTATGGAGACCGTCACTAACCG
TAGCGATTGGCACCTGGAGGATAGAGTCCGTCTCGAGTCGGAGAAGGAAA
AGGATAGGGTCGCCGCTCAGCGACGGCAGGACGATATGAGCCTCACGGTC
GTCGGCGATATCGTACCACGATTCCGAGAGGTACGATTGTATCTGGGATG
TTAACTATGTGTGTGCAAGGATCATGGCCGTCGCCTAGTAGGTCGATGTG
GATTAAGACGGAGAGCTTGATTCAATAACTTAAGTAGGAGTGTCATACAC
GTGCTAAACTTCCGTGAAGTAGTTGTCATGTTTCTCCGTAGACAGTGGCG
GTGCTGGAATATGGATTTGAAAATGCGTCATCTTCGAAAGATCTCGAAGC
GAGCTTCTCGTCGTCCGAGAAAATTTGTGCCAATGTAAAACAGGGCTAGC
TATTATTTATTCCGTATAGGACCATGATATTTGATTGCGGTACCTTTCCT
TTGCCCCAGCAGTCCCTCCTTCTGGACGAAAAAGAAGGGTGTGCACCCTT
CCGACGAGCCGTGCGTCAAGTAAGCAAGGGGAAGGAGGGCTGGGCACCTG
CACTTAGTGCGTTCCGTGAGAAGGCTGTGAAGCTGCTATTCCTCGAGCAG
AAAAGTGTTCGTTGGTATCGCCAAAATATATCTCAGGTGCGTGAAAGTGG
TGTTAGTCGACCTAATAGGCGTAGAAAGTACAAGTAGTAAGTATATCGAT
GCCACGTGTGTTTTTCTTTTAAAATGCCCCGTGATTCAGCAGCGCACAAA
TCAACACCCCATGATTTTTAAAGTGACAAACCTTTGGTCTCGTCGATTGG
CACGTTTCTAGGTTATTTGACAGCGGCATGATTTAGTGATGGAAGTACTG
CAGCAAAACTTTACGAAATCTACATAAAACTCCACGTTCGGGAAAACTGT
CCAGCCAGGTCCGTGGATACTTTCGTCAAGTTATCACACGATTGGAGGAC
TTCGTTCAAAACCGCAACACGCAAACGAGAGGCGATGGAGAGGCGGCTGA
AGGCAAAAGTGGCGTCGAAATGCCTGTCTTCACCGGAAAAGCGAATGGGA
ATGGGGCCAATAGCGACCACGACAACGAGGCAGACACGATTAAGGGAAGC
GAGTTTCTGACATCCTGTTTACACTCAGAGATCGAAGCGTTGGAGAAGAT
ATTGTTCATGCTGCCGTCGACTGCAGGCGGCGTACCTGACGCCTTCCTTA
AATGTAACGATCATACAGCCACGTTGGAAACAGATGGTATCGAAGAAATA
TGTCACGAAAGCGCTGATGTCAGCCGGTCGAGGCGAAGTAGCAAGCGGTT
GGTTATTGCGCTCGATGACGATTAGGTCGGTTTGGCGTCGAGCTTTACTC
CGGAATCTGCTCACTGGGCGTCTTATTGAACATGTGCTCTCACCTCAAGA
TAAAAACCACTTAAGGCACGTGCCTAAAATTTGGAGCCCTTAAATTATGT
GAGTTTTGGGCGAGCGCGTGGATTCAGTGAACTTTGGAACGACCAGCTCT
TTGTCCTCGATTATTATGCACTTTTTTTTATAGATGCAGTGAGTAAACAA
TGTTTGATGTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig7543:4782..8294-

>mRNA_H-elongata_contig7543.15228.1 ID=mRNA_H-elongata_contig7543.15228.1|Name=mRNA_H-elongata_contig7543.15228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2832bp|location=Sequence derived from alignment at H-elongata_contig7543:4782..8294- (Himanthalia elongata Himel1 dioecious)
ATGCCAAAGCGGAAGGCCGAAGTAAACGGGAGGGAAAAGTCGCCGAGGCT
GCCGCCGCCACCCCCTTCTCATGATGAAGATGACAGCGATTTCTGTGAAA
TAATTGAAGCACCACCAAAAGCTGCCGCACTGGTCCCGAGCAGCATACCT
CCGCAGCGATCCGCCGTTGCTTCACCTCTGACTCCGGCACCCCTCTCAGA
CATTTTTTACCAGAACTTGAATTCTCATAGGGATCACGCCTCAATGAGTT
CGTTCGCGGGTCTGACGCAGGAAATGCCGTTCGTGCAGCCAGCCACAGCA
CAGGGCTTCGGCTTCCCACCAATGCAAAATTCTCTTGGCAACTTCTTTCA
GGCAAACCCGTTCGGGTTCAGCCCTGGTGTGCTTGGCCGTCCAGCTGGTG
TACAGGATGGAAGATATTTCGTCGAACACGCGTTACCTCGACCATTGACT
TCGTCTTCCGGTGGAGGATCTAGTGGAGTGCCGGATGCCAAAGCGGAAGG
CCGAAGTAAACGGGAGGGAAAAGTCGCCGAGGCTGCCGCCGCCACCCCCT
TCTCATGATGAAGATGACAGCGATTTCTGTGAAATAATTGAAGCACCACC
AAAAGCTGCCGCACTGGTCCCGAGCAGCATACCTCCGCAGCGATCCGCCG
TTGCTTCACCTCTGACTCCGGCACCCCTCTCAGACATTTTTTACCAGAAC
TTGAATTCTCATAGGGATCACGCCTCAATGAGTTCGTTCGCGGGTCTGAC
GCAGGAAATGCCGTTCGTGCAGCCAGCCACAGCACAGGGCTTCGGCTTCC
CACCAATGCAAAATTCTCTTGGCAACTTCTTTCAGGCAAACCCGTTCGGG
TTCAGCCCTGGTGTGCTTGGCCGTCCAGCTGGTGTACAGGATGGAAGATA
TTTCGTCGAACACGCGTTACCTCGACCATTGACTTCGTCTTCCGGTGGAG
GATCTAGTGGAGTGCCGGTCCAAGCTCGAGTACGGGTACGAGAAAATACG
CCAGCCGAAGAAATAAAGGAGGAACCGGATACTTTGTACCCTACTCAAGA
AGAGCTTTCGTCAGTAGAAATTCTCAGGTCGCACGGGCTGGATGTGGACG
AAGCGGTCCGATTTCTGAGGCAGAATGGTCACAACTTGCAGGCAGCTATT
CAGCAGGCTATGGAGACCGTCACTAACCGTAGCGATTGGCACCTGGAGGA
TAGAGTCCGTCTCGAGTCGGAGAAGGAAAAGGATAGGGTCGCCGCTCAGC
GACGGCAGGACGATATGAGCCTCACGGTCGTCGGCGATATCGTACCACGA
TTCCGAGAGTCCAAGCTCGAGTACGGGTACGAGAAAATACGCCAGCCGAA
GAAATAAAGGAGGAACCGGATACTTTGTACCCTACTCAAGAAGAGCTTTC
GTCAGTAGAAATTCTCAGGTCGCACGGGCTGGATGTGGACGAAGCGGTCC
GATTTCTGAGGCAGAATGGTCACAACTTGCAGGCAGCTATTCAGCAGGCT
ATGGAGACCGTCACTAACCGTAGCGATTGGCACCTGGAGGATAGAGTCCG
TCTCGAGTCGGAGAAGGAAAAGGATAGGGTCGCCGCTCAGCGACGGCAGG
ACGATATGAGCCTCACGGTCGTCGGCGATATCGTACCACGATTCCGAGAG
TCCCTCCTTCTGGACGAAAAAGAAGGGTGTGCACCCTTCCGACGAGCCGT
GCGTCAAGTAAGCAAGGGGAAGGAGGGCTGGGCACCTGCACTTAGTGCGT
TCCGTGAGAAGGCTGTGAAGCTGCTATTCCTCGAGCAGAAAAGTGTTCGT
TGGTATCGCCAAAATATATCTCAGTCCCTCCTTCTGGACGAAAAAGAAGG
GTGTGCACCCTTCCGACGAGCCGTGCGTCAAGTAAGCAAGGGGAAGGAGG
GCTGGGCACCTGCACTTAGTGCGTTCCGTGAGAAGGCTGTGAAGCTGCTA
TTCCTCGAGCAGAAAAGTGTTCGTTGGTATCGCCAAAATATATCTCAGGT
CCGTGGATACTTTCGTCAAGTTATCACACGATTGGAGGACTTCGTTCAAA
ACCGCAACACGCAAACGAGAGGCGATGGAGAGGCGGCTGAAGGCAAAAGT
GGCGTCGAAATGCCTGTCTTCACCGGAAAAGCGAATGGGAATGGGGCCAA
TAGCGACCACGACAACGAGGCAGACACGATTAAGGGAAGCGAGTTTCTGA
CATCCTGTTTACACTCAGAGATCGAAGCGTTGGAGAAGATATTGTTCATG
CTGCCGTCGACTGCAGGCGGCGTACCTGACGCCTTCCTTAAATGTAACGA
TCATACAGCCACGTTGGAAACAGATGGTATCGAAGAAATATGTCACGAAA
GCGCTGATGTCAGCCGGTCGAGGCGAAGTAGCAAGCGGTTGGTTATTGCG
CTCGATGACGATTAGGTCCGTGGATACTTTCGTCAAGTTATCACACGATT
GGAGGACTTCGTTCAAAACCGCAACACGCAAACGAGAGGCGATGGAGAGG
CGGCTGAAGGCAAAAGTGGCGTCGAAATGCCTGTCTTCACCGGAAAAGCG
AATGGGAATGGGGCCAATAGCGACCACGACAACGAGGCAGACACGATTAA
GGGAAGCGAGTTTCTGACATCCTGTTTACACTCAGAGATCGAAGCGTTGG
AGAAGATATTGTTCATGCTGCCGTCGACTGCAGGCGGCGTACCTGACGCC
TTCCTTAAATGTAACGATCATACAGCCACGTTGGAAACAGATGGTATCGA
AGAAATATGTCACGAAAGCGCTGATGTCAGCCGGTCGAGGCGAAGTAGCA
AGCGGTTGGTTATTGCGCTCGATGACGATTAG
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