mRNA_H-elongata_contig75407.15226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75407.15226.1
Unique NamemRNA_H-elongata_contig75407.15226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75407.15226.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.690e-23
Identity = 71/149 (47.65%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:  160 AFEDYDEEEVAALEAYMKTHPAKEDEREALRKRAKELSARIGTSPQARAMPQGQRGTHGGRQAAKSPEPEAGEGKNRRYAT----EEQLEYTDSSGKLKFNKRPVGPLAA-----TERVGTRDKKKTKRTKLAKLSNAKLLSFGDNDDG 579
            AFEDYDEEEVAALEAYMKTHP+KE+++EALRKRA+ELSA IG+   + A         GGR A  +                   EE +EYTD+SGKLKFNKRPV   A                          SNAKLLSFGD++DG
Sbjct:   38 AFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQGSEAK--------GGRTAGGNXXXXXXXXXXXXXXXXXXXEEPIEYTDASGKLKFNKRPVSAAAGGXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 178
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BLAST of mRNA_H-elongata_contig75407.15226.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.320e-12
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  160 AFEDYDEEEVAALEAYMKTHPAKEDEREALRKRAKELSARIGT 288
            AFEDYDEEEVAALEAYMKTHP+KE+++EALRKRA+ELS  IG+
Sbjct:  102 AFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSVSIGS 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75407.15226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMH3_ECTSI5.690e-2347.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF2_9PHAE5.320e-1281.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75407contigH-elongata_contig75407:1029..2142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size584
Cds size582
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75407.15226.1prot_H-elongata_contig75407.15226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75407 1029..2142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.8734388-CDS-H-elongata_contig75407:1028..12141622931159.8734388-CDS-H-elongata_contig75407:1028..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75407 1029..1214 +
1691679722.854869-CDS-H-elongata_contig75407:1028..12141691679722.854869-CDS-H-elongata_contig75407:1028..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75407 1029..1214 +
1622931159.888019-CDS-H-elongata_contig75407:1536..16611622931159.888019-CDS-H-elongata_contig75407:1536..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75407 1537..1661 +
1691679722.866005-CDS-H-elongata_contig75407:1536..16611691679722.866005-CDS-H-elongata_contig75407:1536..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75407 1537..1661 +
1622931159.9009538-CDS-H-elongata_contig75407:1871..21421622931159.9009538-CDS-H-elongata_contig75407:1871..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75407 1872..2142 +
1691679722.8745172-CDS-H-elongata_contig75407:1871..21421691679722.8745172-CDS-H-elongata_contig75407:1871..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75407 1872..2142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75407.15226.1

>prot_H-elongata_contig75407.15226.1 ID=prot_H-elongata_contig75407.15226.1|Name=mRNA_H-elongata_contig75407.15226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
LEEEVFSGGGEPNEGARAGSGSNIGGSSSATAGVGKGSPQDQGRRPGGAG
SGEAFEDYDEEEVAALEAYMKTHPAKEDEREALRKRAKELSARIGTSPQA
RAMPQGQRGTHGGRQAAKSPEPEAGEGKNRRYATEEQLEYTDSSGKLKFN
KRPVGPLAATERVGTRDKKKTKRTKLAKLSNAKLLSFGDNDDG*
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mRNA from alignment at H-elongata_contig75407:1029..2142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75407.15226.1 ID=mRNA_H-elongata_contig75407.15226.1|Name=mRNA_H-elongata_contig75407.15226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1114bp|location=Sequence derived from alignment at H-elongata_contig75407:1029..2142+ (Himanthalia elongata Himel1 dioecious)
CTTGAAGAAGAGGTGTTTAGCGGTGGCGGGGAACCCAACGAAGGCGCCAG
GGCAGGCAGTGGAAGCAACATCGGCGGCAGTAGCAGCGCTACTGCAGGGG
TAGGAAAAGGTAGCCCACAAGACCAGGGTCGGAGACCAGGCGGTGCAGGC
AGTGGAGAAGCATTTGAAGACTATGATGAAGAAGAGGTAAATACCAATAC
CCCCGCCAGACGCACCGGGGGATAAGGCGCTAAGTACAAAATATTATGGT
ACTGCCCAAGGCACTCCAAATATATCAATCGCGCGGCTTTAGACGCCGGC
CGCGTGAGCTCGTGCGGTGGTTCCTTCATTGTGTGGCGAGGTGAAGAAAC
GGCAAAAGCTATACGGCCAGAGGACATGAGACCTTGAAAAATATTCAGGG
CAGAACTGTCACGAGTGATTCCCCCACATAAGCGCTGCCTCGATGATTCG
CGATCTTGCTTCTTAACTTATCATTGAAAATGGTCGTGTTTTGCCATGAA
CGCCACAGGTAGCCGCGCTAGAGGCATACATGAAGACGCACCCGGCCAAG
GAAGACGAAAGAGAGGCGTTGCGAAAACGTGCCAAAGAGCTCTCCGCAAG
AATAGGCACCAGTCCTCAGGCAAGGGCCATGCCGTTCCATAGCATTTTGC
GGTGTTCAGAGTCTCGGCTGTGGTTGGTTATGTTTTGGGGGGCAGAACCA
CGAGATGTAATATTAGCAGACAAGACGCGCCGGGGTTTTAGCCCTTTGCG
ATGCGTTTTCGAAGCATCTTGCCCCTTAGTTATGTACCGCTGTACAGCAG
GCACCGCACACTCACGTGGTCCCTCGTAATTGTTTCTGCAGAGCCAGGGA
CAACGAGGAACACACGGAGGACGGCAAGCAGCGAAGAGTCCAGAACCGGA
GGCAGGAGAGGGCAAAAATCGCAGATACGCAACCGAGGAGCAGCTCGAGT
ATACTGATTCCTCGGGAAAGTTAAAATTCAACAAGCGGCCCGTTGGTCCG
TTGGCGGCCACAGAAAGGGTGGGTACAAGGGACAAGAAAAAGACGAAGCG
GACCAAGTTAGCGAAGCTAAGCAACGCGAAGCTGTTATCCTTCGGAGACA
ACGACGACGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig75407:1029..2142+

>mRNA_H-elongata_contig75407.15226.1 ID=mRNA_H-elongata_contig75407.15226.1|Name=mRNA_H-elongata_contig75407.15226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig75407:1029..2142+ (Himanthalia elongata Himel1 dioecious)
CTTGAAGAAGAGGTGTTTAGCGGTGGCGGGGAACCCAACGAAGGCGCCAG
GGCAGGCAGTGGAAGCAACATCGGCGGCAGTAGCAGCGCTACTGCAGGGG
TAGGAAAAGGTAGCCCACAAGACCAGGGTCGGAGACCAGGCGGTGCAGGC
AGTGGAGAAGCATTTGAAGACTATGATGAAGAAGAGCTTGAAGAAGAGGT
GTTTAGCGGTGGCGGGGAACCCAACGAAGGCGCCAGGGCAGGCAGTGGAA
GCAACATCGGCGGCAGTAGCAGCGCTACTGCAGGGGTAGGAAAAGGTAGC
CCACAAGACCAGGGTCGGAGACCAGGCGGTGCAGGCAGTGGAGAAGCATT
TGAAGACTATGATGAAGAAGAGGTAGCCGCGCTAGAGGCATACATGAAGA
CGCACCCGGCCAAGGAAGACGAAAGAGAGGCGTTGCGAAAACGTGCCAAA
GAGCTCTCCGCAAGAATAGGCACCAGTCCTCAGGCAAGGGCCATGCCGTA
GCCGCGCTAGAGGCATACATGAAGACGCACCCGGCCAAGGAAGACGAAAG
AGAGGCGTTGCGAAAACGTGCCAAAGAGCTCTCCGCAAGAATAGGCACCA
GTCCTCAGGCAAGGGCCATGCCCCAGGGACAACGAGGAACACACGGAGGA
CGGCAAGCAGCGAAGAGTCCAGAACCGGAGGCAGGAGAGGGCAAAAATCG
CAGATACGCAACCGAGGAGCAGCTCGAGTATACTGATTCCTCGGGAAAGT
TAAAATTCAACAAGCGGCCCGTTGGTCCGTTGGCGGCCACAGAAAGGGTG
GGTACAAGGGACAAGAAAAAGACGAAGCGGACCAAGTTAGCGAAGCTAAG
CAACGCGAAGCTGTTATCCTTCGGAGACAACGACGACGGATAACCAGGGA
CAACGAGGAACACACGGAGGACGGCAAGCAGCGAAGAGTCCAGAACCGGA
GGCAGGAGAGGGCAAAAATCGCAGATACGCAACCGAGGAGCAGCTCGAGT
ATACTGATTCCTCGGGAAAGTTAAAATTCAACAAGCGGCCCGTTGGTCCG
TTGGCGGCCACAGAAAGGGTGGGTACAAGGGACAAGAAAAAGACGAAGCG
GACCAAGTTAGCGAAGCTAAGCAACGCGAAGCTGTTATCCTTCGGAGACA
ACGACGACGGATAA
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