mRNA_H-elongata_contig75398.15223.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75398.15223.1
Unique NamemRNA_H-elongata_contig75398.15223.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 7.080e-51
Identity = 78/104 (75.00%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 QDRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDMTENYGRPYNALREKYAEDGKMEETGCPER 312
            QDRGGEYRSLLGVPGGL G MA+ I +EA  RGLAL  G+GGDPDTLM+N VFVMDTA FPF+KGE+YHQFHNDM+E+YGR YN LR++YAE+G M+ETGCPE+
Sbjct:  190 QDRGGEYRSLLGVPGGLSGPMADPIKQEAAARGLALREGNGGDPDTLMRNTVFVMDTATFPFFKGEIYHQFHNDMSEDYGRKYNNLRKQYAEEGTMQETGCPEK 293          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A7S4NE84_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NE84_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.680e-31
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            DRGGEYRSL+G+PGG      + + E A  +G+ L  G G DPDT  K  V+V DTAK+PFY+GE+YHQFHND  +  YG+ YN L +   +DG++  TGCP+R
Sbjct:   55 DRGGEYRSLIGLPGGTSHPEYSKVEEAASAKGMRLEPGKGNDPDTFGKKLVYVYDTAKYPFYQGEVYHQFHNDFQSPPYGKAYNKLADMAFDDGRLGVTGCPDR 158          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A7S0AHU9_9STRA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AHU9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.030e-30
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            DRGGEYRSL+G+PGG+       +   A  +G+ L  G G DPDTL +  V+V DTAKFPFY+GE YHQFHND  +  YG+ YN L ++  EDG+++ TGCP+R
Sbjct:  153 DRGGEYRSLIGLPGGVNHPRYAEVEAAATAKGMKLEEGKGNDPDTLGRKLVYVYDTAKFPFYQGEAYHQFHNDFQSPAYGKKYNDLAKEAVEDGRVKVTGCPDR 256          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A1E7F0B9_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0B9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.420e-30
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            D+GGEYRSL+G+PGG+   M  S+   A+K G  L+ G G D DTL K  V+V D+ KFPFY+GE+YHQ+HND  + NYG+ YN L +   E+G+++ TGCP+R
Sbjct:  192 DKGGEYRSLIGLPGGMSHVMYPSVENAAEKAGFKLVQGLGNDGDTLGKQTVWVYDSNKFPFYQGEIYHQYHNDFQSPNYGKDYNKLADLAFEEGRLKVTGCPDR 295          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A7S2M6J5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M6J5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.600e-30
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHND-MTENYGRPYNALREKYAEDGKMEETGCPER 312
            D+GGEYRSLLG+PGG +      +    K RG+ L+ G G DPDTL K  V+V D+ KFPFY+ E YHQ+HND +T  YG+ YN L E   +DG+++ TGCP+R
Sbjct:  167 DKGGEYRSLLGLPGGSKHPAFAQVEAAGKARGMTLVDGKGNDPDTLGKRLVYVYDSNKFPFYQAEFYHQYHNDFLTPAYGKEYNNLAEAALDDGRIKITGCPDR 270          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A7S4K336_9STRA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K336_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.200e-29
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            DRGGEYRSL+G+PGG      + + E A  +G+ L  G G DPDT  K  V+V DTAK+PFY+GE+YHQFHND  +  YG+ YN L +   +DG++  TGCP+R
Sbjct:  179 DRGGEYRSLIGLPGGTSHPEYSKVEEAASAKGMRLEPGKGNDPDTFGKKLVYVYDTAKYPFYQGEVYHQFHNDFQSPPYGKAYNKLADMAFDDGRLGVTGCPDR 282          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A448YZ63_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZ63_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.500e-29
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            DRG EYRSL+G+PGG++      +   A+K G  L+ G G DPDTL K  V+V D+ KFPFY+GE+YHQ+HND  +  YG+ YN L E   EDG+++ TGCP+R
Sbjct:  181 DRGAEYRSLIGLPGGMKHTSYPLVESAAEKAGFKLVEGKGNDPDTLGKQIVYVYDSTKFPFYQGEVYHQYHNDFQSPAYGKEYNNLVEVALEDGRIKGTGCPDR 284          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A7S2L8U9_9STRA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L8U9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.660e-29
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            D+GGEYRSLLG+PGG    M   +   A  +G+ L  G G DPDTL K  V+VMD+ KFPFY+ E+YHQFHND  +  YG+ YN L +   +DG++++TGCP+R
Sbjct:  183 DKGGEYRSLLGLPGGTSHPMYPQVEAAAAAKGMTLALGKGNDPDTLGKKLVYVMDSNKFPFYQAEVYHQFHNDFQSPAYGKAYNDLVKDAFDDGRVKDTGCPDR 286          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: A0A1Z5KRN0_FISSO (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRN0_FISSO)

HSP 1 Score: 115 bits (289), Expect = 1.750e-29
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHNDM-TENYGRPYNALREKYAEDGKMEETGCPER 312
            DRGGEYRSL+G+PGG    +   I + A+  G  L  G G DPDTL +  V+V DT +FPFY+ E+YHQFHND  ++ YG+ YNA+ +   EDG+++ TGCP+R
Sbjct:  172 DRGGEYRSLMGLPGGTSHPLYPDIVQVAQSAGFTLKPGKGSDPDTLRQQLVYVYDTKEFPFYQAEVYHQFHNDFQSKPYGKEYNAIADLALEDGRIKPTGCPDR 275          
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Match: B5YN67_THAPS (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YN67_THAPS)

HSP 1 Score: 119 bits (299), Expect = 3.720e-29
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    4 DRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKNKVFVMDTAKFPFYKGELYHQFHND-MTENYGRPYNALREKYAEDGKMEETGCPER 312
            D+GGEYRSLLG+PGG    M   +   AK RG+ L+ G G DPDTL K  V+VMD+ KFPFY+ E+YHQ+HND ++  YG+ YN L E    DG+++ TGCP+R
Sbjct:  181 DKGGEYRSLLGLPGGKGHPMYAQVEAAAKDRGMTLVDGKGNDPDTLGKRLVYVMDSNKFPFYQAEVYHQYHNDFLSSAYGKEYNNLVEAAVADGRIKITGCPDR 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75398.15223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK2_ECTSI7.080e-5175.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4NE84_9STRA8.680e-3151.92Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S0AHU9_9STRA1.030e-3052.88Peptide-methionine (S)-S-oxide reductase n=2 Tax=M... [more]
A0A1E7F0B9_9STRA2.420e-3051.92Peptide-methionine (S)-S-oxide reductase n=1 Tax=F... [more]
A0A7S2M6J5_9STRA5.600e-3051.92Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4K336_9STRA1.200e-2951.92Peptide-methionine (S)-S-oxide reductase n=2 Tax=O... [more]
A0A448YZ63_9STRA1.500e-2951.92Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]
A0A7S2L8U9_9STRA1.660e-2951.92Peptide-methionine (S)-S-oxide reductase n=2 Tax=L... [more]
A0A1Z5KRN0_FISSO1.750e-2950.96Peptide-methionine (S)-S-oxide reductase n=2 Tax=F... [more]
B5YN67_THAPS3.720e-2953.85Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75398contigH-elongata_contig75398:1810..2860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue3.1e-40
Seed eggNOG ortholog2880.D8LMK2
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs2DF2K@1,2RZE5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003060.1
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.5115874-CDS-H-elongata_contig75398:1809..19861622931159.5115874-CDS-H-elongata_contig75398:1809..1986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75398 1810..1986 -
1691679722.7018483-CDS-H-elongata_contig75398:1809..19861691679722.7018483-CDS-H-elongata_contig75398:1809..1986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75398 1810..1986 -
1622931159.5310414-CDS-H-elongata_contig75398:2707..28601622931159.5310414-CDS-H-elongata_contig75398:2707..2860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75398 2708..2860 -
1691679722.7154536-CDS-H-elongata_contig75398:2707..28601691679722.7154536-CDS-H-elongata_contig75398:2707..2860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75398 2708..2860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75398.15223.1prot_H-elongata_contig75398.15223.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75398 1810..2860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75398.15223.1

>prot_H-elongata_contig75398.15223.1 ID=prot_H-elongata_contig75398.15223.1|Name=mRNA_H-elongata_contig75398.15223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
QDRGGEYRSLLGVPGGLEGAMANSINEEAKKRGLALLGGSGGDPDTLMKN
KVFVMDTAKFPFYKGELYHQFHNDMTENYGRPYNALREKYAEDGKMEETG
CPERGFLGF*
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mRNA from alignment at H-elongata_contig75398:1810..2860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75398.15223.1 ID=mRNA_H-elongata_contig75398.15223.1|Name=mRNA_H-elongata_contig75398.15223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1051bp|location=Sequence derived from alignment at H-elongata_contig75398:1810..2860- (Himanthalia elongata Himel1 dioecious)
CAGGACCGAGGAGGAGAGTACCGATCTCTTCTGGGAGTTCCTGGGGGTCT GGAAGGGGCAATGGCTAATTCCATTAACGAAGAGGCTAAAAAGCGCGGGT TGGCGTTACTGGGCGGTTCGGGAGGAGACCCCGACACCCTTATGAAGAAC AAGGTGCGATAGCGCAGCCCAAATCCGTTTCCCAGCGATGGATCTGGGGA GAAGAGGGGGGGGTAACGCGCCTCTGGTTATTCTTATTCGATAAACTCAC AGCACTATCGCACGGAACTGTCTGCCCGAATGCCATTATCTCCCTCTCTT CCTTTTTTTTTAACATCGACTATACATAGCGCGCGCATTGCTGGCTCGCT ACGGGCTAAGGTACAGAACAACAACTAGCGCTAGGCCACCGTGAACCATT GCAATCATTAAGACTCTGGTCAAATTGAATCCGCCCTCCTCGCTCTCTAT TTTCTAGATATAATTTGCTGTAATAAACCTAGCACGCCACCCCTTTGAAA ATATCTTAACGATATATTCTTGAATCTTCCCGCCGAGAATTCACAGAAAA CATCATTGAGCATTGTCCCCCATCCCCGAGTGGAGGGAATTAAAAACGCC TCCTCCCCTCGCTTGGTGAGTGCAGATATACGATACCAACCATAAACACC GACTCGTGCTAATCTAGTGCGGGTAAATACTATAGCCATGGCAATTGTCG TAGCCAGCACGCCCCAATCACCCGAGAATAGGGGATGAATACGTTTTGTC TCTTGTAAGGGACGAATTTAACCTGTCCCCTGTCCCCTTAACGGGGACGT TTAAGTAATTTCCCCTCCTCTACCACCCTTACCATTGGATGGTTCACATC CCCCCCCCCACCCGCAAAAACCAGGTGTTCGTGATGGACACCGCCAAATT CCCTTTCTACAAGGGCGAGCTATACCATCAGTTCCACAACGACATGACGG AGAATTACGGCCGTCCGTACAACGCTCTGAGGGAAAAGTACGCCGAAGAT GGAAAAATGGAGGAGACTGGATGCCCAGAACGCGGCTTCCTCGGCTTCTA G
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Coding sequence (CDS) from alignment at H-elongata_contig75398:1810..2860-

>mRNA_H-elongata_contig75398.15223.1 ID=mRNA_H-elongata_contig75398.15223.1|Name=mRNA_H-elongata_contig75398.15223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig75398:1810..2860- (Himanthalia elongata Himel1 dioecious)
CAGGACCGAGGAGGAGAGTACCGATCTCTTCTGGGAGTTCCTGGGGGTCT
GGAAGGGGCAATGGCTAATTCCATTAACGAAGAGGCTAAAAAGCGCGGGT
TGGCGTTACTGGGCGGTTCGGGAGGAGACCCCGACACCCTTATGAAGAAC
AAGCAGGACCGAGGAGGAGAGTACCGATCTCTTCTGGGAGTTCCTGGGGG
TCTGGAAGGGGCAATGGCTAATTCCATTAACGAAGAGGCTAAAAAGCGCG
GGTTGGCGTTACTGGGCGGTTCGGGAGGAGACCCCGACACCCTTATGAAG
AACAAGGTGTTCGTGATGGACACCGCCAAATTCCCTTTCTACAAGGGCGA
GCTATACCATCAGTTCCACAACGACATGACGGAGAATTACGGCCGTCCGT
ACAACGCTCTGAGGGAAAAGTACGCCGAAGATGGAAAAATGGAGGAGACT
GGATGCCCAGAACGCGGCTTCCTCGGCTTCTAGGTGTTCGTGATGGACAC
CGCCAAATTCCCTTTCTACAAGGGCGAGCTATACCATCAGTTCCACAACG
ACATGACGGAGAATTACGGCCGTCCGTACAACGCTCTGAGGGAAAAGTAC
GCCGAAGATGGAAAAATGGAGGAGACTGGATGCCCAGAACGCGGCTTCCT
CGGCTTCTAG
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