mRNA_H-elongata_contig75326.15217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75326.15217.1
Unique NamemRNA_H-elongata_contig75326.15217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A6H5KT28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT28_9PHAE)

HSP 1 Score: 385 bits (989), Expect = 5.320e-127
Identity = 195/229 (85.15%), Postives = 205/229 (89.52%), Query Frame = 1 
Query:    1 PAPARRWPPPRRLVPIDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIEA 687
            P P+   P PR  VPID +AAKTWIYPVNYP+R YQ QIVT ALF NTLVALPTGLGKTLIAAVVMYN+YRWFPEGKVVFLAPTKPLVAQQISACY+IMGVPE+DTAELQGSV P+KR +LW +RRVFFCTPQSM NDIK KRCDP RFVCVVVDEAHRGTGNYAYVNVIREVAAAT HFRVLALSATPGSD K    VLVNLRI+HIECRSEDDPEVARHTHARQIEA
Sbjct:   85 PRPSSAKPLPR--VPIDKEAAKTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYNIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVVDEAHRGTGNYAYVNVIREVAAATSHFRVLALSATPGSDIK----VLVNLRIAHIECRSEDDPEVARHTHARQIEA 307
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: D7FP48_ECTSI (DEAD box helicase similar to CG7922-PA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP48_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 1.220e-122
Identity = 196/228 (85.96%), Postives = 206/228 (90.35%), Query Frame = 1 
Query:    1 PAPARRWPPPRRLVPIDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            P P+   P PR  VPID +AA+TWIYPVNYP+R YQ QIVT ALF NTLVALPTGLGKTLIAAVVMYN+YRWFP GKVVFLAPTKPLVAQQISACYDIMGVPE+DTAELQGSV P+KR +LW +RRVFFCTPQSM NDIK KRCDP RFVCVVVDEAHRGTGNYAYVNVIREVAAAT HFRVLALSATPGSD K IQQVLVNLRI+HIECRSEDDPEVARHTHARQIE
Sbjct:   89 PRPSSAKPLPR--VPIDEEAAQTWIYPVNYPIRQYQLQIVTQALFQNTLVALPTGLGKTLIAAVVMYNYYRWFPRGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVVDEAHRGTGNYAYVNVIREVAAATAHFRVLALSATPGSDIKTIQQVLVNLRIAHIECRSEDDPEVARHTHARQIE 314
[Close]
BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A1V9Z2F6_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2F6_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.310e-94
Identity = 145/213 (68.08%), Postives = 171/213 (80.28%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            ID D A  WIYP NYPVR YQQ I  AALF NTLV LPTGLGKTLIAAVVMYN+YRWFP GK+VF+APTKPLV+QQI AC+++M     D AELQG+VAP +R++LW ++RVFFCTPQSM ND++   CD  +FVCVVVDEAHR TGNYAYV V++ +AA    FRVLALSATPG+    IQ+V+ NLRISHIECRS DDP+V ++TH+RQ E
Sbjct:  168 IDRDLATQWIYPSNYPVRTYQQTITRAALFHNTLVCLPTGLGKTLIAAVVMYNYYRWFPTGKIVFMAPTKPLVSQQIQACHNVMPFAHSDMAELQGNVAPTRRKQLWAEKRVFFCTPQSMQNDVELGNCDVTKFVCVVVDEAHRATGNYAYVMVVKAIAAKISGFRVLALSATPGAKFDVIQEVISNLRISHIECRSGDDPDVRKYTHSRQEE 380
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A067CCY2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CCY2_SAPPC)

HSP 1 Score: 302 bits (773), Expect = 7.990e-94
Identity = 143/213 (67.14%), Postives = 169/213 (79.34%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            ID D A  WIYP NYPVR YQQ I  AALF NTLV LPTGLGKTLIAAVVMYN+YRWFP GK+VF+APTKPLV+QQI AC+ +M +P  D AELQG+V P +R++LW  +RVFFCTPQSM NDI++  CD   FVCVVVDEAHR TGNYAY  V++ +A+    FRVLALSATPG+    IQ+V+ NLRISHIEC+S DDP+V ++TH+RQ E
Sbjct:  182 IDRDLATHWIYPSNYPVRTYQQTITRAALFQNTLVCLPTGLGKTLIAAVVMYNYYRWFPSGKIVFMAPTKPLVSQQIEACHSVMPIPHDDMAELQGNVPPARRKQLWAQKRVFFCTPQSMQNDIERGNCDVSSFVCVVVDEAHRATGNYAYTVVVKAIASKISGFRVLALSATPGAKFDVIQEVISNLRISHIECKSGDDPDVRKYTHSRQEE 394
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A4W5NCS5_9TELE (Helicase ATP-binding domain-containing protein n=2 Tax=Salmonidae TaxID=8015 RepID=A0A4W5NCS5_9TELE)

HSP 1 Score: 289 bits (739), Expect = 1.140e-93
Identity = 133/213 (62.44%), Postives = 165/213 (77.46%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            +DS +AK WIYP NYP+R+YQ +I  AALF NTLV LPTGLGKT IAAVVMYNFYRW+P GK+VF+APTKPLVAQQI ACY +MG+P+   AEL GS   ++R+ELWR RR+FF TPQ +VND+ +  C      CVV+DEAH+  GN+AY  V+R++ + T  FRVLALSATPG DTK++QQVL NL ISHIE RSE+ P++  H+H R +E
Sbjct:  147 LDSSSAKVWIYPTNYPIRDYQLKISEAALFQNTLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACYKVMGIPQTHMAELTGSTQAQQRQELWRSRRIFFLTPQVLVNDLSRATCPALHVKCVVIDEAHKALGNHAYCQVVRQLGSQTQQFRVLALSATPGGDTKSVQQVLYNLLISHIELRSEESPDIQAHSHQRSLE 359
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A3N0YYC0_ANAGA (Fanconi anemia group M protein n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YYC0_ANAGA)

HSP 1 Score: 289 bits (739), Expect = 1.170e-93
Identity = 137/213 (64.32%), Postives = 159/213 (74.65%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
             D  A + WIYP NYPVR YQ QI  AAL  NTLV LPTGLGKT IAAV+MYN+YRWFP GK+VF+APTKPLVAQQI ACY +MG+P++  AEL GS A  +RRELWR RRVFF TPQ MVND+ +  C   +  CVV+DEAH+ TGN+AY  V+RE+      FRVLALSATPG D KA+QQV+ NL ISHIE RSED P+V  H H R +E
Sbjct:  155 FDPSAGRVWIYPTNYPVRQYQLQICEAALLRNTLVCLPTGLGKTFIAAVLMYNYYRWFPAGKIVFMAPTKPLVAQQIQACYGVMGIPQQHMAELTGSTAAPQRRELWRSRRVFFLTPQVMVNDLSRNTCPAAQVKCVVIDEAHKATGNHAYCQVVRELCNQMQQFRVLALSATPGGDVKAVQQVISNLLISHIELRSEDSPDVQTHVHQRSLE 367
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A6G0X567_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X567_9STRA)

HSP 1 Score: 309 bits (791), Expect = 3.180e-93
Identity = 149/213 (69.95%), Postives = 171/213 (80.28%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            ID D A  WIYP NYPVR YQQ I  AALF NTLV LPTGLGKTLIAAVVMYNFYRWFP GK+VF+APTKPLV+QQI AC+D+M +P+ D AELQG+VAP KR+ LW  +RVFFCTPQS+ NDI++  CD   FVCVVVDEAHR TGNYAYV  IR +AA    FR+LALSATPGS    IQ+V+ NLRISHIEC+S DDP+V ++TH+RQ E
Sbjct:   26 IDRDLATQWIYPSNYPVRIYQQTIARAALFQNTLVCLPTGLGKTLIAAVVMYNFYRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQHDMAELQGNVAPAKRKLLWSTKRVFFCTPQSLQNDIERGNCDVRSFVCVVVDEAHRATGNYAYVVAIRHIAAKISGFRILALSATPGSKFDVIQEVITNLRISHIECKSGDDPDVRKYTHSRQEE 238
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A3B5ANG5_9TELE (Fanconi anemia group M protein-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5ANG5_9TELE)

HSP 1 Score: 285 bits (729), Expect = 3.310e-93
Identity = 133/218 (61.01%), Postives = 165/218 (75.69%), Query Frame = 1 
Query:   31 RRLVPIDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            R L   DS +AK WIYP NYP+R YQ +I  AALF NTLV LPTGLGKT IA+VVMYNFYRW+P GK+VF+APTKPLVAQQI AC+ +MG+P+   AEL GS A ++R+ELWR +RVFF TPQ M ND+ +  C   +  CVV+DEAH+  GN+AY  VIR++ + T  FRVLALSATPG DTK++Q V+ NL ISHIE RSE+ P++  H+H R +E
Sbjct:   53 RNLPGFDSSSAKVWIYPTNYPIREYQLKISEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACFKVMGIPQAHMAELTGSTAAKQRQELWRSKRVFFLTPQVMANDLSRDTCPAQQVKCVVIDEAHKALGNHAYCQVIRQLGSQTLQFRVLALSATPGGDTKSVQAVISNLLISHIELRSEESPDIRAHSHQRSVE 270
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BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A060WEB4_ONCMY (Helicase ATP-binding domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060WEB4_ONCMY)

HSP 1 Score: 285 bits (730), Expect = 4.290e-93
Identity = 130/213 (61.03%), Postives = 164/213 (77.00%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
            +DS +AK WIYP NYP+R+YQ +I  AALF NTLV LPTGLGKT IAAVVMYNFYRW+P GK+VF+APTKPLVAQQI ACY++MG+P+   AEL GS   + R+ELWR RR+FF TPQ +VND+ +  C      CVV+DEAH+  GN+AY  V+R++ + T  FR+LALSATPG DT ++QQV+ NL ISHIE RSE+ P++  H+H R +E
Sbjct:   73 LDSSSAKVWIYPTNYPIRDYQLKISEAALFQNTLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACYNVMGIPQTHMAELTGSTQAQHRQELWRSRRIFFLTPQVLVNDLSRATCPALHVKCVVIDEAHKALGNHAYCQVVRQLGSQTQQFRILALSATPGGDTNSVQQVISNLLISHIELRSEESPDIQAHSHQRSLE 285
[Close]
BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Match: A0A2R8QLE4_DANRE (Helicase ATP-binding domain-containing protein n=1 Tax=Danio rerio TaxID=7955 RepID=A0A2R8QLE4_DANRE)

HSP 1 Score: 283 bits (725), Expect = 6.130e-93
Identity = 134/213 (62.91%), Postives = 159/213 (74.65%), Query Frame = 1 
Query:   46 IDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLVALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFVCVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVLVNLRISHIECRSEDDPEVARHTHARQIE 684
             D  A + WIYP N P+R YQ ++  AAL  NTLV LPTGLGKT IA+V+MYN+YRWFP GK+VF+APTKPLVAQQI ACY +MG+P++ TAEL GS A  +RR LW  RRVFF TPQ MVND+ +  C   +  CVV+DEAH+ TGN+AY  VIRE+   TP FRVLALSATPG D KA+QQV+ NL ISHIE RSED P+V  H H R +E
Sbjct:   13 FDYSAGRVWIYPTNLPLREYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPAGKIVFMAPTKPLVAQQIEACYRVMGIPQEHTAELTGSTAAPQRRSLWSSRRVFFLTPQVMVNDLCRNTCPAAQVRCVVIDEAHKATGNHAYCQVIRELRKQTPQFRVLALSATPGGDVKAVQQVISNLLISHIELRSEDSPDVQTHVHQRSLE 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75326.15217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT28_9PHAE5.320e-12785.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP48_ECTSI1.220e-12285.96DEAD box helicase similar to CG7922-PA n=1 Tax=Ect... [more]
A0A1V9Z2F6_9STRA2.310e-9468.08DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna... [more]
A0A067CCY2_SAPPC7.990e-9467.14Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A4W5NCS5_9TELE1.140e-9362.44Helicase ATP-binding domain-containing protein n=2... [more]
A0A3N0YYC0_ANAGA1.170e-9364.32Fanconi anemia group M protein n=1 Tax=Anabarilius... [more]
A0A6G0X567_9STRA3.180e-9369.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3B5ANG5_9TELE3.310e-9361.01Fanconi anemia group M protein-like n=1 Tax=Stegas... [more]
A0A060WEB4_ONCMY4.290e-9361.03Helicase ATP-binding domain-containing protein n=1... [more]
A0A2R8QLE4_DANRE6.130e-9362.91Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75326contigH-elongata_contig75326:902..2493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.0
Seed ortholog evalue1.2e-107
Seed eggNOG ortholog2880.D7FP48
Preferred nameFANCM
KEGG koko:K10896
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0031297,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045003,GO:0045005,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071821,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1903046
EggNOG free text desc.helicase activity
EggNOG OGsCOG1111@1,COG5141@1,KOG0354@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75326.15217.1prot_H-elongata_contig75326.15217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75326 902..2493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.9973922-CDS-H-elongata_contig75326:901..11161622931158.9973922-CDS-H-elongata_contig75326:901..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 902..1116 +
1691679722.4913213-CDS-H-elongata_contig75326:901..11161691679722.4913213-CDS-H-elongata_contig75326:901..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 902..1116 +
1622931159.014299-CDS-H-elongata_contig75326:1399..16521622931159.014299-CDS-H-elongata_contig75326:1399..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 1400..1652 +
1691679722.511338-CDS-H-elongata_contig75326:1399..16521691679722.511338-CDS-H-elongata_contig75326:1399..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 1400..1652 +
1622931159.0373528-CDS-H-elongata_contig75326:2063..21771622931159.0373528-CDS-H-elongata_contig75326:2063..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 2064..2177 +
1691679722.521774-CDS-H-elongata_contig75326:2063..21771691679722.521774-CDS-H-elongata_contig75326:2063..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 2064..2177 +
1622931159.0542421-CDS-H-elongata_contig75326:2373..24931622931159.0542421-CDS-H-elongata_contig75326:2373..2493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 2374..2493 +
1691679722.530627-CDS-H-elongata_contig75326:2373..24931691679722.530627-CDS-H-elongata_contig75326:2373..2493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75326 2374..2493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75326.15217.1

>prot_H-elongata_contig75326.15217.1 ID=prot_H-elongata_contig75326.15217.1|Name=mRNA_H-elongata_contig75326.15217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
PAPARRWPPPRRLVPIDSDAAKTWIYPVNYPVRNYQQQIVTAALFSNTLV
ALPTGLGKTLIAAVVMYNFYRWFPEGKVVFLAPTKPLVAQQISACYDIMG
VPEKDTAELQGSVAPEKRRELWRDRRVFFCTPQSMVNDIKQKRCDPGRFV
CVVVDEAHRGTGNYAYVNVIREVAAATPHFRVLALSATPGSDTKAIQQVL
VNLRISHIECRSEDDPEVARHTHARQIEARLPRL
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mRNA from alignment at H-elongata_contig75326:902..2493+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75326.15217.1 ID=mRNA_H-elongata_contig75326.15217.1|Name=mRNA_H-elongata_contig75326.15217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1592bp|location=Sequence derived from alignment at H-elongata_contig75326:902..2493+ (Himanthalia elongata Himel1 dioecious)
CCCGCCCCTGCGCGTCGGTGGCCCCCTCCACGTCGTCTCGTGCCGATAGA
CTCCGACGCCGCGAAGACGTGGATCTACCCCGTGAACTACCCCGTGCGGA
ATTACCAGCAGCAGATCGTGACCGCGGCACTCTTCAGCAACACGCTCGTG
GCGCTTCCGACCGGTCTGGGCAAGACTCTCATCGCCGCGGTCGTCATGTA
CAATTTCTATCGGTGGTACGAGAGAGGGAAAAAGACAGAAAAGGATGTTT
TAGTCCTTGATTCACTATTCATATAAGCGTTTTATCAGATAGTGGCAGTA
CTTCTCAATAGGATCGATATTCAGTGCTGCACTGTACACTGCTGCCGTAG
GCCAACAGAGATACTACTTCTGTAGCAATTTATATGCGCAATCCTATGCG
CATCGGCAAACCCTTACAGCGCGCTTTCTCGTCGAGGCAGTACTCAGGCT
CACCACGCCCACTTGCATCTGCTCGCCGCCCGCCCCGTCATGTCTCAGGT
TTCCAGAGGGGAAAGTTGTGTTTCTGGCCCCTACCAAGCCTCTCGTAGCC
CAGCAGATCAGCGCGTGCTACGACATTATGGGAGTCCCCGAGAAGGACAC
AGCCGAACTTCAGGGAAGCGTCGCCCCGGAAAAGCGGCGCGAGCTGTGGA
GAGATCGAAGGGTATTCTTCTGCACCCCGCAAAGCATGGTCAACGATATC
AAGCAGAAGCGCTGCGACCCCGGGAGGTTTGTCTGCGTCGTTGTGGACGA
GGTAAGCCGCGGAGTTGCACTCCGGATGGGCGTGACCTAGAGAGGATTTG
CGCGTTGCGTGGAACGAAAGCTGCCGCAAGGCGTTCCCCCAAGGGCCCAA
ACCGGGAATCGCAAAGCATCAAGCGTTGTTGTGGTTCTGCAGAAGATACT
AGCTTGAGGAGGCGTTTTGTCGTCAGTATTTCCGATTGAAGCAGAGCAAT
GCGATGTTTTACAGCGGTGTGATGAGTACAACTAGAGGCGACGGCGGGGA
TCCCGTCGCGAAAGAGAATCAAGCGCCACCCAAGAATTATCCGAAGAATA
ACTTTAAGACGCTTCAACACCGTTGTGTTACCCGCGTGGCGCTGATTATC
GCCGCAGCGGGTGTCGAGGTCTTATTAAATTGTGGATGAACCTCCCCCTG
ATCCAAACGCAGGCGCATCGAGGCACTGGCAACTACGCCTACGTCAACGT
CATCCGCGAGGTGGCCGCTGCGACGCCACACTTCCGAGTACTGGCGCTAA
GCGCGACCCCTGGGAGTGATACCAAGGTCGGCGTTATGATGCCTCGCAGG
CCACATGAAACGCCTCAAATCGGACCATACGCTCTTACAAAGTAACCCAT
CACGTTGCCATAAATACACGAGGTTCTTGCTCGCCTAGCGCATCGACCGC
GATGCTTGTTGCCCCGCGCTTCCACCCGTGTCTTCGGCTCCTTGTACCAT
CCCTATCTCCGTCTTCGAAAAGGCGATCCAGCAGGTGCTAGTGAATCTCC
GTATCTCGCACATCGAGTGCCGCAGCGAGGACGACCCGGAAGTCGCAAGG
CACACTCACGCACGACAGATCGAGGCGAGACTTCCCCGCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig75326:902..2493+

>mRNA_H-elongata_contig75326.15217.1 ID=mRNA_H-elongata_contig75326.15217.1|Name=mRNA_H-elongata_contig75326.15217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig75326:902..2493+ (Himanthalia elongata Himel1 dioecious)
CCCGCCCCTGCGCGTCGGTGGCCCCCTCCACGTCGTCTCGTGCCGATAGA
CTCCGACGCCGCGAAGACGTGGATCTACCCCGTGAACTACCCCGTGCGGA
ATTACCAGCAGCAGATCGTGACCGCGGCACTCTTCAGCAACACGCTCGTG
GCGCTTCCGACCGGTCTGGGCAAGACTCTCATCGCCGCGGTCGTCATGTA
CAATTTCTATCGGTGCCCGCCCCTGCGCGTCGGTGGCCCCCTCCACGTCG
TCTCGTGCCGATAGACTCCGACGCCGCGAAGACGTGGATCTACCCCGTGA
ACTACCCCGTGCGGAATTACCAGCAGCAGATCGTGACCGCGGCACTCTTC
AGCAACACGCTCGTGGCGCTTCCGACCGGTCTGGGCAAGACTCTCATCGC
CGCGGTCGTCATGTACAATTTCTATCGGTGGTTTCCAGAGGGGAAAGTTG
TGTTTCTGGCCCCTACCAAGCCTCTCGTAGCCCAGCAGATCAGCGCGTGC
TACGACATTATGGGAGTCCCCGAGAAGGACACAGCCGAACTTCAGGGAAG
CGTCGCCCCGGAAAAGCGGCGCGAGCTGTGGAGAGATCGAAGGGTATTCT
TCTGCACCCCGCAAAGCATGGTCAACGATATCAAGCAGAAGCGCTGCGAC
CCCGGGAGGTTTGTCTGCGTCGTTGTGGACGAGGTTTCCAGAGGGGAAAG
TTGTGTTTCTGGCCCCTACCAAGCCTCTCGTAGCCCAGCAGATCAGCGCG
TGCTACGACATTATGGGAGTCCCCGAGAAGGACACAGCCGAACTTCAGGG
AAGCGTCGCCCCGGAAAAGCGGCGCGAGCTGTGGAGAGATCGAAGGGTAT
TCTTCTGCACCCCGCAAAGCATGGTCAACGATATCAAGCAGAAGCGCTGC
GACCCCGGGAGGTTTGTCTGCGTCGTTGTGGACGAGGCGCATCGAGGCAC
TGGCAACTACGCCTACGTCAACGTCATCCGCGAGGTGGCCGCTGCGACGC
CACACTTCCGAGTACTGGCGCTAAGCGCGACCCCTGGGAGTGATACCAAG
GCGCATCGAGGCACTGGCAACTACGCCTACGTCAACGTCATCCGCGAGGT
GGCCGCTGCGACGCCACACTTCCGAGTACTGGCGCTAAGCGCGACCCCTG
GGAGTGATACCAAGGCGATCCAGCAGGTGCTAGTGAATCTCCGTATCTCG
CACATCGAGTGCCGCAGCGAGGACGACCCGGAAGTCGCAAGGCACACTCA
CGCACGACAGATCGAGGCGAGACTTCCCCGCTTGGCGATCCAGCAGGTGC
TAGTGAATCTCCGTATCTCGCACATCGAGTGCCGCAGCGAGGACGACCCG
GAAGTCGCAAGGCACACTCACGCACGACAGATCGAGGCGAGACTTCCCCG
CTTG
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