mRNA_H-elongata_contig75317.15214.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.080e-36 Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = 1
Query: 1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
LG Q+TELKRVRAVAQYM+KELQMVPWT+T N+LK G+ SS A LL LSG GDPSG GEGFSFL R AEQAK +++LT+SQKI A+RSVQKVTGT+ DLR
Sbjct: 1009 LGTQLTELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATASLTTSQKIVAERSVQKVTGTNSDLR 1110
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE) HSP 1 Score: 139 bits (349), Expect = 5.020e-36 Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 1
Query: 1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
LG Q+ ELKRVRAVAQYM+KELQMVPWT+T N+LK G+ SS A LL LSG GDPSG GEGFSFL R AEQAK +++LT+SQKI A+RSVQKVTGT+ DLR
Sbjct: 223 LGTQLAELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATTSLTTSQKIVAERSVQKVTGTNSDLR 324
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: K0T8U3_THAOC (Bromo domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8U3_THAOC) HSP 1 Score: 65.5 bits (158), Expect = 3.160e-10 Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
L Q +LKR +++A+++++ELQ+ PW ++ +F+ T ++L+G GDPSGRGE +SFL + + SSA A + ++K+TGT DLR
Sbjct: 881 LDGQYHDLKRKQSIAKFIYEELQLSPWNLSGDFIDVHKRAIRNQT--MKLTGIGDPSGRGEAYSFLREEGGRGSKSSAAVDG---ALNAQIKKITGTENDLR 977
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: H3GM70_PHYRM (Bromo domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM70_PHYRM) HSP 1 Score: 64.7 bits (156), Expect = 5.910e-10 Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 19 ELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 306
+L++ VA+Y++++LQ+ PW +T N+++ G +L+L G GDP+GRGEGFSF+ +AK T+ + TS++ A ++V VTGT+ DLR
Sbjct: 851 KLEKDIQVARYVNEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKTSAETTAMQKAVAAVTGTTADLR 954
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A7S2VAC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAC4_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.670e-9 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 40 VAQYMHKELQMVPWTITANFLK-HRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
VAQ++H+EL + PW +T FL H+ ++ T +++L+G GDPSG GEGFSFL R+ + + S A + V+K+TGT+ DLR
Sbjct: 4 VAQFIHQELLLAPWHLTGEFLDVHK---KAEGTGMMKLTGLGDPSGTGEGFSFL-REVDSKPSKSV----GNAAINAQVKKITGTNDDLR 85
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A7S3XPI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPI2_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 1.810e-9 Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQ--AEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
L AQ+ EL+RV VA+Y+ EL PW T +F++ G LRL+G GDPSG GEGFSF+ + A +A+ ++AL + D V++VTGT+ DLR
Sbjct: 16 LQAQVRELQRVIEVARYIRTELLWSPWYQTQSFVQVHLQGKESGK--LRLTGVGDPSGVGEGFSFVREEKVAGKAEKANAL---KLTGTDELVKQVTGTTADLR 114
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: M4BEB5_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEB5_HYAAE) HSP 1 Score: 63.2 bits (152), Expect = 2.050e-9 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 40 VAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTS-----SALTSSQKIAAD-----RSVQKVTGTSGDLR 306
VA+Y++++LQ+ PW +T N+++ G +L+L G GDP+GRGEGFSF+ +AK SA T+ KI+A+ ++V VTGT+ DLR
Sbjct: 873 VARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDSAPTAESKISAETAAVQKAVAAVTGTTADLR 969
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A067DXS5_CITSI (DUF3591 domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DXS5_CITSI) HSP 1 Score: 61.6 bits (148), Expect = 2.550e-9 Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 37 AVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
A A ++ +ELQ+ PW +++NF+ L ++G GDPSGRG GFS++ R A +A SSA+ +K+AA+R VTGT DLR
Sbjct: 120 AAASHIERELQITPWNLSSNFVACTNQDRENIE-RLEITGVGDPSGRGLGFSYV-RAAPKASVSSAMVK-KKVAANRGGSNVTGTDADLR 206
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A6G0SI53_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SI53_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 2.770e-9 Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 40 VAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 306
VA+Y++++LQ+ PW +T N+++ G +L+L G GDP+GRGEGFSF+ +AK T+ + S++ A ++V VTGT+ DLR
Sbjct: 869 VARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAESAAVQKAVAAVTGTTADLR 965
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO) HSP 1 Score: 62.8 bits (151), Expect = 2.790e-9 Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 22 LKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
L++ VAQ++ +ELQ+ PW +T F+ G + T +++L+G GDPSG GEGFSFL R+A+ + S A + ++K+TGT DLR
Sbjct: 794 LRQKYEVAQFIFEELQLAPWHLTVEFIDVHKKG--EGTGMMKLTGLGDPSGMGEGFSFL-READSKPSKSV----GNAALNSQIKKITGTENDLR 881 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75317.15214.1 >prot_H-elongata_contig75317.15214.1 ID=prot_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp MTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGback to top mRNA from alignment at H-elongata_contig75317:396..1297- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75317.15214.1 ID=mRNA_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=902bp|location=Sequence derived from alignment at H-elongata_contig75317:396..1297- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75317:396..1297- >mRNA_H-elongata_contig75317.15214.1 ID=mRNA_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig75317:396..1297- (Himanthalia elongata Himel1 dioecious)back to top |