mRNA_H-elongata_contig75281.15211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75281.15211.1
Unique NamemRNA_H-elongata_contig75281.15211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75281.15211.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 124 bits (310), Expect = 3.910e-27
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 2 
Query:  170 RQMMGVHYRIDSTEGLVLGETIAIRALHQELMSFPEKYSFEFRLFTGEVIELFQNGTFSIDGGTCSGEVYTGVAECRA 403
            RQM+G+HYR D  +GL+LGETI +R LHQELM+F E+ +FEFRLFTGEVI+LFQ+GTFSIDG  CSG VYTGVA+C+A
Sbjct:  599 RQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDMCSGLVYTGVADCQA 676
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BLAST of mRNA_H-elongata_contig75281.15211.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 115 bits (288), Expect = 1.970e-24
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 2 
Query:  170 RQMMGVHYRIDSTEGLVLGETIAIRALHQELMSFPEKYSFEFRLFTGEVIELFQNGTFSIDGGTCSGEVYTGVAEC 397
            RQM+G+HYR D  +GL+LGETI +R LHQELM+F E+ +FEFRLFTGEVI+LFQ+GTF+IDG  C G VYTGV  C
Sbjct:  480 RQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTGVENC 555
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BLAST of mRNA_H-elongata_contig75281.15211.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.630e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  170 RQMMGVHYRIDSTEGLVLGETIAIRALHQELMSFPEKYSFEFRLFTGEVIELFQNGTFSIDGGTCSGEVYTGVAEC 397
            R M+GVH+RIDS  GL+LGET A+R L QE +++PE   +EFRL +G+ I L  +GTF ID   CSG+ + G   C
Sbjct:  549 RNMLGVHWRIDSELGLLLGETAAVRILQQEAVAYPENAGYEFRLMSGKTIRLETDGTFFIDDTLCSGDAFMGADLC 624
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BLAST of mRNA_H-elongata_contig75281.15211.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.470e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:  170 RQMMGVHYRIDSTEGLVLGETIAIRALHQELMSFPEKYSFEFRLFTGEVIELFQNGTFSIDGGTCSGEVYTGVAEC 397
            R M GVH+RIDS +GL+LGE  A+R L QE ++FPE   +EF L +GE I L  +GTF I+   CSG+ + G   C
Sbjct:  538 RNMCGVHWRIDSEQGLLLGEMAAVRILQQEAVTFPENAGYEFNLMSGETIRLETDGTFFINDRLCSGDAFMGADLC 613
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BLAST of mRNA_H-elongata_contig75281.15211.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 63.2 bits (152), Expect = 4.430e-7
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:  170 RQMMGVHYRIDSTEGLVLGETIAIRALHQELMSFPEKYSFEFRLFTGE 313
            R  MGVH+R+D+ EGL+LGET+A+R L QEL  FPE   +EFR+ +GE
Sbjct:  526 RNWMGVHWRMDAQEGLLLGETVAVRILMQELAGFPELEPYEFRVMSGE 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75281.15211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
O82433_FUCDI3.910e-2771.79Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO1.970e-2468.42Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
Q4LDE6_9PHAE4.630e-1451.32Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
B7ZGM6_9PHAE3.470e-1350.00Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
A0A3G3BM28_SACJA4.430e-758.33Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75281contigH-elongata_contig75281:204..1710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1189
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75281.15211.1prot_H-elongata_contig75281.15211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75281 352..927 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.21519-UTR-H-elongata_contig75281:203..3511622931158.21519-UTR-H-elongata_contig75281:203..351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75281 204..351 +
1691679722.1489968-UTR-H-elongata_contig75281:203..3511691679722.1489968-UTR-H-elongata_contig75281:203..351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75281 204..351 +
1622931158.2695777-UTR-H-elongata_contig75281:927..17101622931158.2695777-UTR-H-elongata_contig75281:927..1710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75281 928..1710 +
1691679722.1863582-UTR-H-elongata_contig75281:927..17101691679722.1863582-UTR-H-elongata_contig75281:927..1710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75281 928..1710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.2320645-CDS-H-elongata_contig75281:351..4591622931158.2320645-CDS-H-elongata_contig75281:351..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75281 352..459 +
1691679722.1626513-CDS-H-elongata_contig75281:351..4591691679722.1626513-CDS-H-elongata_contig75281:351..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75281 352..459 +
1622931158.2491584-CDS-H-elongata_contig75281:777..9271622931158.2491584-CDS-H-elongata_contig75281:777..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75281 778..927 +
1691679722.1781433-CDS-H-elongata_contig75281:777..9271691679722.1781433-CDS-H-elongata_contig75281:777..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75281 778..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75281.15211.1

>prot_H-elongata_contig75281.15211.1 ID=prot_H-elongata_contig75281.15211.1|Name=mRNA_H-elongata_contig75281.15211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MLMIVHYRQMMGVHYRIDSTEGLVLGETIAIRALHQELMSFPEKYSFEFR
LFTGEVIELFQNGTFSIDGGTCSGEVYTGVAECRA*
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mRNA from alignment at H-elongata_contig75281:204..1710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75281.15211.1 ID=mRNA_H-elongata_contig75281.15211.1|Name=mRNA_H-elongata_contig75281.15211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1507bp|location=Sequence derived from alignment at H-elongata_contig75281:204..1710+ (Himanthalia elongata Himel1 dioecious)
TTTAAAATTCGAAAATGCACATATCGCTGAAGCTCCGCATAGACGCAGGG
CAGGAATGAACCGAGCACGTTGGTGCGGACAGCTATAAAGAACTTTCGAG
ACTTCTCAACGATTTAGTCTGATGTAAAACGCTTGTTACACTGCTTCCAT
GCTCATGATTGTGCACTACAGGCAGATGATGGGCGTCCACTATCGAATCG
ACAGTACTGAGGGGTTAGTTCTCGGTGAAACTATCGCCATAAGAGCACTT
CACCAGGTACATTCATCATCAATGCTTGGGTCATGTGCTCCTATCGACAA
GGGTAGCTTCCAAGAGTATAAACTATCTCAAAATAATATTTTCGCTTGCA
CTGTCTTTTGTACATGTATTGAGCTTTGTAGCGGGCTTTGGTCACCGTCA
GGCACGGGAACTACTAGACGCCAAACTTTATCACCACCATTAGAATTTCA
TCACGAACACCTCGGCAAGGCCACAATCGTTTGTAGCGTGAAGGTTACGG
GTATCTGCTTAGTCGGTGTTCTTAACGTTCCTACATCACTTGACACGTTC
GTGCAACATCGTCCCCTGATTCAGGAGCTGATGTCTTTCCCCGAGAAATA
CTCCTTCGAGTTCCGACTTTTCACCGGCGAGGTCATCGAACTTTTCCAGA
ACGGCACTTTTTCCATCGACGGTGGCACATGCTCAGGAGAGGTATATACC
GGCGTGGCGGAATGCCGGGCTTAACTCCGGAGGCGATTTCAGATGCCGTG
TCATTTTGAAACAAAGCACTCTGCTTGAGTCAAGGCGCGCTAGCGTTCGT
TGTGAAGTGGTACATGAGGTACATGGGGTGCCCATATTTTCAAAAGGTGG
AACAAGGACTACGAGAGCAATAGTTTCGGCTGGGGAAGAAGCAGCAAAAG
GGGCACGACAGTTGTAGCAAAATTACTCTGTATGAGATATTCGTTAGTTA
AAGGAATATAACAGTATAAACGTTTGTCTTCGTTGTTAACTTGGACAGTC
GTATGTTCAGGGATTGTCTGCCGTAATTTTACGAGGGCGTATTCGTTCGA
TGTAGTTGCAGCATTATTCCGCACAAATCGACGGTGGATGGTGTATTCCT
GACAACGGCGAAAAGTTAACAACCTGAGCTCCCAAGAGATGTCCCTCATT
TATGACAAAAGCCTCTGCTGGTTTTGGCTATTAATAATACTAACGCCCAT
CGAATTATTTCACGCGTGTTTCGCCTGGTGTAGATGCGTGTTCACGGCTC
AAAAGAGGGAGAGGGAGAAGGGGCGGAGGTATAAAAAATGGCGGTTAGGA
ACAGAGAAACGGACTAAGCAATAACCTAATCAGGCGTGGAGAACATATAA
TATATGTTTATGGGCCTTAGAGGGGAAAAACGAGAAAGCAGTCGAAGCTC
CACATAACATAGAGAAGAAATAAGGCGACAAGTGTATCGATGGACACCTG
GATTGATTGATTGGTTGATTCTTCATCACACTAACAGCCGACCGGTCTCC
TCCACCC
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Coding sequence (CDS) from alignment at H-elongata_contig75281:204..1710+

>mRNA_H-elongata_contig75281.15211.1 ID=mRNA_H-elongata_contig75281.15211.1|Name=mRNA_H-elongata_contig75281.15211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig75281:204..1710+ (Himanthalia elongata Himel1 dioecious)
ATGCTCATGATTGTGCACTACAGGCAGATGATGGGCGTCCACTATCGAAT
CGACAGTACTGAGGGGTTAGTTCTCGGTGAAACTATCGCCATAAGAGCAC
TTCACCAGATGCTCATGATTGTGCACTACAGGCAGATGATGGGCGTCCAC
TATCGAATCGACAGTACTGAGGGGTTAGTTCTCGGTGAAACTATCGCCAT
AAGAGCACTTCACCAGGAGCTGATGTCTTTCCCCGAGAAATACTCCTTCG
AGTTCCGACTTTTCACCGGCGAGGTCATCGAACTTTTCCAGAACGGCACT
TTTTCCATCGACGGTGGCACATGCTCAGGAGAGGTATATACCGGCGTGGC
GGAATGCCGGGCTTAAGAGCTGATGTCTTTCCCCGAGAAATACTCCTTCG
AGTTCCGACTTTTCACCGGCGAGGTCATCGAACTTTTCCAGAACGGCACT
TTTTCCATCGACGGTGGCACATGCTCAGGAGAGGTATATACCGGCGTGGC
GGAATGCCGGGCTTAA
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