mRNA_H-elongata_contig75248.15208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75248.15208.1
Unique NamemRNA_H-elongata_contig75248.15208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: D8LG75_ECTSI (HELICc2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG75_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.290e-31
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFK 201
            QASRAVNQAIGRVIRHR DYGCVVLCDSRFA++RNR+SLSLWARPFVRECS FGKVAADLT+FFK
Sbjct:  149 QASRAVNQAIGRVIRHRLDYGCVVLCDSRFAEDRNRKSLSLWARPFVRECSGFGKVAADLTKFFK 213
[Close]
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A6H5KW94_9PHAE (HELICc2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW94_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.670e-30
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFK 201
            QASRAVNQAIGRVIRHR DYGCVVLCDSRFA++RNR+SLSLWARPFVRECS FGKVAADLT+FFK
Sbjct:  222 QASRAVNQAIGRVIRHRLDYGCVVLCDSRFAEDRNRKSLSLWARPFVRECSGFGKVAADLTKFFK 286
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BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A835IFC1_9MAGN (Helicase ATP-binding domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IFC1_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 6.550e-18
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFKVLL 210
            QASRAVNQA+GRVIRHR DYG ++ CD RF+  +N+  +S+W +P+++  S+FG+VA  LTRFF+ +L
Sbjct:  628 QASRAVNQAVGRVIRHRHDYGAIIFCDERFSHAKNQHQMSIWLQPYIKCYSNFGEVAFTLTRFFRDIL 695
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BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A1X7U2G6_AMPQE (HELICc2 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U2G6_AMPQE)

HSP 1 Score: 84.0 bits (206), Expect = 9.930e-18
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFKV 204
            QA+RAVNQAIGRVIRH+ DYG ++LCD RFA  R +  L LW RP +++   FG    DLT FFK+
Sbjct:   30 QATRAVNQAIGRVIRHKNDYGAIILCDERFAYSRGQDDLPLWLRPQLQKYDKFGPAQRDLTSFFKI 95
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BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A433Q1I5_9FUNG (HELICc2 domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q1I5_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-17
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFKVLLS 213
            QA RAVNQAIGRVIRHR+DYG ++LCD RFA       LS W RPFV+ C++FG+    +T+FFK + S
Sbjct:  126 QAIRAVNQAIGRVIRHRKDYGAILLCDERFASPAIISQLSGWVRPFVKVCNNFGEAQGQVTKFFKSIES 194
[Close]
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A6A4W3C5_AMPAM (Regulator of telomere elongation helicase 1 homolog n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W3C5_AMPAM)

HSP 1 Score: 88.2 bits (217), Expect = 1.630e-17
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFK 201
            +ASRAVNQA+GRVIRHRRDYG V+LCDSRF D      LS W RP++R  ++FG V  +LT+FFK
Sbjct:  690 EASRAVNQAVGRVIRHRRDYGAVILCDSRFGDAGFSGQLSAWVRPYLRVHANFGTVVRELTQFFK 754
[Close]
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A4W5JXI1_9TELE (HELICc2 domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5JXI1_9TELE)

HSP 1 Score: 82.0 bits (201), Expect = 1.970e-17
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFKV 204
            QASRAVNQAIGRVIRHR DYG + LCD RF     R  L  W RP+VR   +FG V  D+ +FF+V
Sbjct:   35 QASRAVNQAIGRVIRHRDDYGAIFLCDHRFKSTDARAQLPSWVRPYVRTYDNFGNVVRDVAQFFRV 100
[Close]
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: A0A507C178_9FUNG (Helicase ATP-binding domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C178_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 4.150e-17
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFK 201
            QA RAVNQAIGRVIRHRRDYG ++L D RFA  +N + L LW RP+V+  S+FG+   DL +FFK
Sbjct:  711 QAVRAVNQAIGRVIRHRRDYGAIILADERFAQPQNIKQLPLWVRPYVKVASNFGQAQMDLIKFFK 775
[Close]
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: UPI000BA816EE (regulator of telomere elongation helicase 1 homolog isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA816EE)

HSP 1 Score: 87.0 bits (214), Expect = 4.170e-17
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFK 201
            QASRAVNQA+GRVIRHR+DYG V+LCD+RFA++R    LSLW R  V+  ++FG    DL++FFK
Sbjct:  649 QASRAVNQAVGRVIRHRKDYGAVLLCDNRFAEKRINSQLSLWVRDRVKSYTTFGPALRDLSKFFK 713
[Close]
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Match: D8RJV6_SELML (DNA helicase (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RJV6_SELML)

HSP 1 Score: 86.3 bits (212), Expect = 7.500e-17
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    7 QASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVRECSSFGKVAADLTRFFK 201
            QASRAVNQA+GRVIRH+ DYG ++LCD RFA    +  LSLW RP V+  S FG  A  LTRFFK
Sbjct:  651 QASRAVNQAVGRVIRHKNDYGAIILCDERFAQAGAQSQLSLWLRPHVKLYSKFGDAAFTLTRFFK 715
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75248.15208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG75_ECTSI3.290e-3190.77HELICc2 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KW94_9PHAE2.670e-3090.77HELICc2 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835IFC1_9MAGN6.550e-1855.88Helicase ATP-binding domain-containing protein n=1... [more]
A0A1X7U2G6_AMPQE9.930e-1857.58HELICc2 domain-containing protein n=1 Tax=Amphimed... [more]
A0A433Q1I5_9FUNG1.180e-1757.97HELICc2 domain-containing protein n=1 Tax=Jimgerde... [more]
A0A6A4W3C5_AMPAM1.630e-1763.08Regulator of telomere elongation helicase 1 homolo... [more]
A0A4W5JXI1_9TELE1.970e-1759.09HELICc2 domain-containing protein n=1 Tax=Hucho hu... [more]
A0A507C178_9FUNG4.150e-1761.54Helicase ATP-binding domain-containing protein n=1... [more]
UPI000BA816EE4.170e-1761.54regulator of telomere elongation helicase 1 homolo... [more]
D8RJV6_SELML7.500e-1763.08DNA helicase (Fragment) n=4 Tax=Selaginella moelle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75248contigH-elongata_contig75248:1569..2008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D8LG75
Preferred nameRTEL1
KEGG koko:K11136
GOsGO:0000018,GO:0000723,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009892,GO:0009987,GO:0010569,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0032200,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0034645,GO:0036297,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048229,GO:0048364,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070716,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:1901360,GO:1901576,GO:2000779,GO:2001020
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP-dependent helicase, C-terminal
Ec32 orthologEc-17_004010.1
Exons1
Model size440
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.902676-CDS-H-elongata_contig75248:1568..17931622931157.902676-CDS-H-elongata_contig75248:1568..1793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75248 1569..1793 +
1691679722.04714-CDS-H-elongata_contig75248:1568..17931691679722.04714-CDS-H-elongata_contig75248:1568..1793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75248 1569..1793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.9254863-UTR-H-elongata_contig75248:1793..20081622931157.9254863-UTR-H-elongata_contig75248:1793..2008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75248 1794..2008 +
1691679722.0664427-UTR-H-elongata_contig75248:1793..20081691679722.0664427-UTR-H-elongata_contig75248:1793..2008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75248 1794..2008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75248.15208.1prot_H-elongata_contig75248.15208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75248 1569..1793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75248.15208.1

>prot_H-elongata_contig75248.15208.1 ID=prot_H-elongata_contig75248.15208.1|Name=mRNA_H-elongata_contig75248.15208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
ASQASRAVNQAIGRVIRHRRDYGCVVLCDSRFADERNRQSLSLWARPFVR
ECSSFGKVAADLTRFFKVLLSRVM*
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mRNA from alignment at H-elongata_contig75248:1569..2008+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75248.15208.1 ID=mRNA_H-elongata_contig75248.15208.1|Name=mRNA_H-elongata_contig75248.15208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=440bp|location=Sequence derived from alignment at H-elongata_contig75248:1569..2008+ (Himanthalia elongata Himel1 dioecious)
GCGTCACAGGCGTCGCGTGCGGTAAACCAAGCCATCGGCAGAGTCATCCG
ACACCGGCGAGATTACGGGTGCGTGGTGCTCTGCGATTCGCGCTTTGCCG
ACGAGCGCAACCGGCAGAGCTTGTCCCTGTGGGCGAGGCCCTTCGTGAGG
GAGTGTAGCAGCTTTGGCAAGGTCGCCGCCGACCTGACCAGGTTTTTCAA
GGTGCTGCTCAGCCGTGTTATGTGACGAGCCTTTGCGGGCGAAAAGCGAC
AATATATAGTCTAAATGTGTATATATAATATTATCGGACGTGCGTGCGCT
TATAGCCTGCTTAAGAACTTAGACGGCAACAGCCAAGTCACGATTGAGGT
GGATATTCTTCACGATTCTCGCGTCGACTGGAGGAAGGACATGGTGTAGA
CATGGGTGTATTGCTATTGGGTTGTGTGATGAAATACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig75248:1569..2008+

>mRNA_H-elongata_contig75248.15208.1 ID=mRNA_H-elongata_contig75248.15208.1|Name=mRNA_H-elongata_contig75248.15208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig75248:1569..2008+ (Himanthalia elongata Himel1 dioecious)
GCGTCACAGGCGTCGCGTGCGGTAAACCAAGCCATCGGCAGAGTCATCCG
ACACCGGCGAGATTACGGGTGCGTGGTGCTCTGCGATTCGCGCTTTGCCG
ACGAGCGCAACCGGCAGAGCTTGTCCCTGTGGGCGAGGCCCTTCGTGAGG
GAGTGTAGCAGCTTTGGCAAGGTCGCCGCCGACCTGACCAGGTTTTTCAA
GGTGCTGCTCAGCCGTGTTATGTGAGCGTCACAGGCGTCGCGTGCGGTAA
ACCAAGCCATCGGCAGAGTCATCCGACACCGGCGAGATTACGGGTGCGTG
GTGCTCTGCGATTCGCGCTTTGCCGACGAGCGCAACCGGCAGAGCTTGTC
CCTGTGGGCGAGGCCCTTCGTGAGGGAGTGTAGCAGCTTTGGCAAGGTCG
CCGCCGACCTGACCAGGTTTTTCAAGGTGCTGCTCAGCCGTGTTATGTGA
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