mRNA_H-elongata_contig75217.15204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75217.15204.1
Unique NamemRNA_H-elongata_contig75217.15204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 250 bits (638), Expect = 2.080e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:   34 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: UPI001C0866E4 (histone H3-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0866E4)

HSP 1 Score: 250 bits (638), Expect = 2.380e-83
Identity = 135/145 (93.10%), Postives = 140/145 (96.55%), Query Frame = 1 
Query:   10 LFNSKSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            LFNS+    MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 LFNSEEYVAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 146
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.430e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   37 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (640), Expect = 9.810e-83
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    4 RQLFNSKSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            R  F+ +    MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   63 RPTFHQQQTVKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.110e-82
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:   22 KSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            K+   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   10 KNKKIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (632), Expect = 1.400e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   37 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: W5PHG0_SHEEP (Histone H3 n=3 Tax=Boreoeutheria TaxID=1437010 RepID=W5PHG0_SHEEP)

HSP 1 Score: 248 bits (633), Expect = 1.470e-82
Identity = 134/145 (92.41%), Postives = 138/145 (95.17%), Query Frame = 1 
Query:   10 LFNSKSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            LF   +V  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 LFRDTTVQAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 148
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: UPI0015C3C017 (LOW QUALITY PROTEIN: histone H3 isoform X2 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=UPI0015C3C017)

HSP 1 Score: 249 bits (636), Expect = 2.330e-82
Identity = 134/141 (95.04%), Postives = 140/141 (99.29%), Query Frame = 1 
Query:   22 KSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            +S+STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   53 RSLSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 193
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: A0A2A2JS84_9BILA (Histone domain-containing protein n=2 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2JS84_9BILA)

HSP 1 Score: 249 bits (636), Expect = 3.150e-82
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:   25 SVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            SVS MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   63 SVSVMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERN 202
[Close]
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Match: A0A1L8DWN3_9DIPT (Putative histones h3 and h4 (Fragment) n=1 Tax=Nyssomyia neivai TaxID=330878 RepID=A0A1L8DWN3_9DIPT)

HSP 1 Score: 247 bits (631), Expect = 4.010e-82
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:   22 KSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 444
            KS  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   17 KSRKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75217.15204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK2.080e-8398.54Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
UPI001C0866E42.380e-8393.10histone H3-like n=1 Tax=Alosa sapidissima TaxID=34... [more]
W4GZ05_9STRA3.430e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
K0S7I6_THAOC9.810e-8393.20Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A7S1BJN3_9STRA1.110e-8295.74Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A1Z5K8H0_FISSO1.400e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
W5PHG0_SHEEP1.470e-8292.41Histone H3 n=3 Tax=Boreoeutheria TaxID=1437010 Rep... [more]
UPI0015C3C0172.330e-8295.04LOW QUALITY PROTEIN: histone H3 isoform X2 n=1 Tax... [more]
A0A2A2JS84_9BILA3.150e-8296.43Histone domain-containing protein n=2 Tax=Diplosca... [more]
A0A1L8DWN3_9DIPT4.010e-8295.04Putative histones h3 and h4 (Fragment) n=1 Tax=Nys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75217contigH-elongata_contig75217:2340..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue4.4e-66
Seed eggNOG ortholog159749.K0S7I6
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
EggNOG free text desc.Histone H3
EggNOG OGs2XDZK@2836,COG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categorymitochondrion
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.5335784-CDS-H-elongata_contig75217:2339..27861622931157.5335784-CDS-H-elongata_contig75217:2339..2786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75217 2340..2786 +
1691679721.9081495-CDS-H-elongata_contig75217:2339..27861691679721.9081495-CDS-H-elongata_contig75217:2339..2786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75217 2340..2786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75217.15204.1prot_H-elongata_contig75217.15204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75217 2340..2786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75217.15204.1

>prot_H-elongata_contig75217.15204.1 ID=prot_H-elongata_contig75217.15204.1|Name=mRNA_H-elongata_contig75217.15204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
LRQLFNSKSVSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGS
AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-elongata_contig75217:2340..2786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75217.15204.1 ID=mRNA_H-elongata_contig75217.15204.1|Name=mRNA_H-elongata_contig75217.15204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig75217:2340..2786+ (Himanthalia elongata Himel1 dioecious)
CTCAGACAACTATTCAATTCAAAAAGCGTCAGCACTATGGCCCGCACGAA
GCAGACAGCACGAAAGTCTACCGGAGGAAAGGCTCCGCGCAAACAGCTCG
CCACAAAGGCGGCCCGTAAGTCGGCACCCGCTACAGGGGGTGTGAAGAAA
CCCCACCGCTACAGGCCCGGTACCGTCGCCTTGCGCGAGATTCGCCGGTA
CCAGAAGTCTACCGAGCTCCTGATCCGTAAGCTACCTTTCCAGCGTCTGG
TGCGCGAGATCGCGCAAGACTTCAAAAGTGATTTGCGCTTCCAAGGCTCA
GCCGTGCTCGCTCTTCAGGAGGCTGCCGAAGCCTACCTCGTTGGCCTGTT
CGAAGACACAAACCTCTGTGCTATCCACGCCAAACGTGTAACCATCATGC
CCAAGGACATCCAGCTGGCCAGGCGCATCCGAGGCGAGCGGTCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig75217:2340..2786+

>mRNA_H-elongata_contig75217.15204.1 ID=mRNA_H-elongata_contig75217.15204.1|Name=mRNA_H-elongata_contig75217.15204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig75217:2340..2786+ (Himanthalia elongata Himel1 dioecious)
CTCAGACAACTATTCAATTCAAAAAGCGTCAGCACTATGGCCCGCACGAA
GCAGACAGCACGAAAGTCTACCGGAGGAAAGGCTCCGCGCAAACAGCTCG
CCACAAAGGCGGCCCGTAAGTCGGCACCCGCTACAGGGGGTGTGAAGAAA
CCCCACCGCTACAGGCCCGGTACCGTCGCCTTGCGCGAGATTCGCCGGTA
CCAGAAGTCTACCGAGCTCCTGATCCGTAAGCTACCTTTCCAGCGTCTGG
TGCGCGAGATCGCGCAAGACTTCAAAAGTGATTTGCGCTTCCAAGGCTCA
GCCGTGCTCGCTCTTCAGGAGGCTGCCGAAGCCTACCTCGTTGGCCTGTT
CGAAGACACAAACCTCTGTGCTATCCACGCCAAACGTGTAACCATCATGC
CCAAGGACATCCAGCTGGCCAGGCGCATCCGAGGCGAGCGGTCGTAACTC
AGACAACTATTCAATTCAAAAAGCGTCAGCACTATGGCCCGCACGAAGCA
GACAGCACGAAAGTCTACCGGAGGAAAGGCTCCGCGCAAACAGCTCGCCA
CAAAGGCGGCCCGTAAGTCGGCACCCGCTACAGGGGGTGTGAAGAAACCC
CACCGCTACAGGCCCGGTACCGTCGCCTTGCGCGAGATTCGCCGGTACCA
GAAGTCTACCGAGCTCCTGATCCGTAAGCTACCTTTCCAGCGTCTGGTGC
GCGAGATCGCGCAAGACTTCAAAAGTGATTTGCGCTTCCAAGGCTCAGCC
GTGCTCGCTCTTCAGGAGGCTGCCGAAGCCTACCTCGTTGGCCTGTTCGA
AGACACAAACCTCTGTGCTATCCACGCCAAACGTGTAACCATCATGCCCA
AGGACATCCAGCTGGCCAGGCGCATCCGAGGCGAGCGGTCGTAA
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