mRNA_H-elongata_contig75200.15201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75200.15201.1
Unique NamemRNA_H-elongata_contig75200.15201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75200.15201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75200contigH-elongata_contig75200:2754..2965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.2810621-CDS-H-elongata_contig75200:2753..28501622931157.2810621-CDS-H-elongata_contig75200:2753..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75200 2754..2850 +
1691679721.7934182-CDS-H-elongata_contig75200:2753..28501691679721.7934182-CDS-H-elongata_contig75200:2753..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75200 2754..2850 +
1622931157.2981632-CDS-H-elongata_contig75200:2862..29631622931157.2981632-CDS-H-elongata_contig75200:2862..2963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75200 2863..2963 +
1691679721.8102746-CDS-H-elongata_contig75200:2862..29631691679721.8102746-CDS-H-elongata_contig75200:2862..2963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75200 2863..2963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75200.15201.1prot_H-elongata_contig75200.15201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75200 2754..2963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75200.15201.1

>prot_H-elongata_contig75200.15201.1 ID=prot_H-elongata_contig75200.15201.1|Name=mRNA_H-elongata_contig75200.15201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
PVGASLLCDATLHNSYNEKTKQLIYYRCFVYFTRVKRGSPNNVQTFLRII
LTVSERYSDSQIPGTF
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mRNA from alignment at H-elongata_contig75200:2754..2965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75200.15201.1 ID=mRNA_H-elongata_contig75200.15201.1|Name=mRNA_H-elongata_contig75200.15201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=212bp|location=Sequence derived from alignment at H-elongata_contig75200:2754..2965+ (Himanthalia elongata Himel1 dioecious)
CCAGTAGGGGCTAGTCTCCTGTGCGATGCTACCCTGCATAATAGCTACAA
CGAGAAAACAAAACAACTAATCTACTACCGTTGTTTTGTTTACTTTAGTT
TCCCCGAAGCACGTGTAAAACGAGGGTCCCCAAACAACGTCCAAACGTTT
CTACGGATTATCCTGACAGTCTCGGAACGGTATTCTGATTCACAAATTCC
AGGAACGTTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig75200:2754..2965+

>mRNA_H-elongata_contig75200.15201.1 ID=mRNA_H-elongata_contig75200.15201.1|Name=mRNA_H-elongata_contig75200.15201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig75200:2754..2965+ (Himanthalia elongata Himel1 dioecious)
CCAGTAGGGGCTAGTCTCCTGTGCGATGCTACCCTGCATAATAGCTACAA
CGAGAAAACAAAACAACTAATCTACTACCGTTGTTTTGTTTACTTTACCA
GTAGGGGCTAGTCTCCTGTGCGATGCTACCCTGCATAATAGCTACAACGA
GAAAACAAAACAACTAATCTACTACCGTTGTTTTGTTTACTTTACACGTG
TAAAACGAGGGTCCCCAAACAACGTCCAAACGTTTCTACGGATTATCCTG
ACAGTCTCGGAACGGTATTCTGATTCACAAATTCCAGGAACGTTCCACGT
GTAAAACGAGGGTCCCCAAACAACGTCCAAACGTTTCTACGGATTATCCT
GACAGTCTCGGAACGGTATTCTGATTCACAAATTCCAGGAACGTTC
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