mRNA_H-elongata_contig7519.15199.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7519.15199.1
Unique NamemRNA_H-elongata_contig7519.15199.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7519.15199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7519contigH-elongata_contig7519:1348..3137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1790
Cds size1551
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7519.15199.1prot_H-elongata_contig7519.15199.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7519 1446..2996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.1083164-UTR-H-elongata_contig7519:1347..14451622931157.1083164-UTR-H-elongata_contig7519:1347..1445Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7519 1348..1445 +
1691679721.7366343-UTR-H-elongata_contig7519:1347..14451691679721.7366343-UTR-H-elongata_contig7519:1347..1445Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7519 1348..1445 +
1622931157.1455665-UTR-H-elongata_contig7519:2996..31371622931157.1455665-UTR-H-elongata_contig7519:2996..3137Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7519 2997..3137 +
1691679721.7547817-UTR-H-elongata_contig7519:2996..31371691679721.7547817-UTR-H-elongata_contig7519:2996..3137Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7519 2997..3137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.126262-CDS-H-elongata_contig7519:1445..29961622931157.126262-CDS-H-elongata_contig7519:1445..2996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7519 1446..2996 +
1691679721.7469249-CDS-H-elongata_contig7519:1445..29961691679721.7469249-CDS-H-elongata_contig7519:1445..2996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7519 1446..2996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7519.15199.1

>prot_H-elongata_contig7519.15199.1 ID=prot_H-elongata_contig7519.15199.1|Name=mRNA_H-elongata_contig7519.15199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=517bp
MVHVSKKRCAGDGCSKQASYGKAGSTKREYCAKHALEGMVNVSNNMCAGD
ECSKLASYGKAGRKKRKYCAKHAFDDIVHLSNKICASDGCSKVPNYGNAG
STKREYCAGHAMEGMANVSIKKCAGDGCSKLASYGEAGSTTVEYCVKHAL
AGMINVLHKKCAADGCSKLPSYGKAGSTKKVYCAKHALDDMIYLSSKICV
GDGCSKFSTYGKAGSTKREYCAEHALEGMVNVAMKKCAGDGCSKLPSYGK
AGSTKREYCAEHALEGMVNVLHKRCAADGCSKQPNFGKVWSTKREYCSEH
ALEGMVNISQKRCAAHRCLKFASFGKTMSTKKKYCPEHALEGMVIVWNRR
CAGDGCVKEPNYGKAGSTKREYCTEHALEGMVNVSKKRCAGDGCSKIPSY
GKAGSTKREYCVEHALEGMVNVSKKRCPGDVFSEISPIEDAGSANRDYCA
KYAIEGMMSIVPHNSVSSGKRVSKIATSAESVSKISITDNKVRATFSETE
LGPVLVKSEVSVIKSN*
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mRNA from alignment at H-elongata_contig7519:1348..3137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7519.15199.1 ID=mRNA_H-elongata_contig7519.15199.1|Name=mRNA_H-elongata_contig7519.15199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-elongata_contig7519:1348..3137+ (Himanthalia elongata Himel1 dioecious)
AGGAATTATGTCACGACTTTGGGTACTTAAATCTACCAAATATCGGGAAG
GCTAGAAGCACGAGTAGGGCGTACTGCTCCAAGCAAGCGTTAGGCGAGAT
GGTTCATGTTTCCAAGAAAAGGTGTGCCGGTGATGGATGTTCTAAGCAAG
CGAGCTACGGAAAGGCCGGAAGCACAAAACGGGAGTACTGTGCTAAGCAT
GCCTTGGAGGGGATGGTCAATGTTTCGAACAATATGTGTGCCGGTGATGA
ATGTTCAAAGCTAGCGAGCTACGGAAAGGCCGGAAGAAAGAAACGAAAGT
ACTGCGCTAAACATGCCTTCGATGATATTGTCCACCTTTCAAACAAAATT
TGTGCCAGCGATGGCTGCTCTAAGGTACCAAACTACGGGAATGCTGGCAG
CACGAAACGGGAGTACTGCGCCGGACATGCAATGGAAGGGATGGCCAATG
TTTCGATCAAAAAGTGTGCCGGTGATGGATGTTCTAAGCTAGCGAGCTAC
GGAGAAGCCGGAAGTACGACAGTGGAGTACTGCGTTAAGCATGCCTTGGC
GGGTATGATCAATGTTTTGCACAAAAAGTGTGCCGCTGATGGATGTTCCA
AGCTTCCAAGCTACGGGAAGGCTGGAAGCACGAAAAAAGTATACTGCGCT
AAACATGCCTTGGATGATATGATCTACCTTTCAAGCAAAATTTGTGTCGG
CGATGGCTGCTCTAAGTTTTCAACCTACGGGAAGGCTGGCAGCACGAAAC
GGGAGTACTGCGCCGAACATGCATTGGAAGGGATGGTCAATGTTGCGATG
AAAAAGTGTGCCGGTGATGGATGTTCTAAGCTACCAAGCTACGGAAAGGC
CGGAAGCACGAAACGAGAGTACTGTGCTGAGCATGCCTTGGAGGGGATGG
TCAATGTTTTGCACAAAAGGTGTGCCGCTGATGGATGCTCAAAGCAACCG
AACTTTGGAAAAGTCTGGAGCACGAAGCGAGAGTACTGCTCCGAGCATGC
CTTGGAGGGGATGGTCAATATTTCGCAGAAAAGGTGCGCCGCTCATAGAT
GCTTGAAGTTTGCGAGCTTTGGGAAGACTATGAGCACGAAGAAAAAGTAC
TGCCCTGAGCATGCATTGGAGGGAATGGTTATTGTTTGGAACAGAAGGTG
TGCAGGTGATGGATGTGTTAAGGAGCCAAATTACGGAAAGGCAGGAAGCA
CGAAACGGGAGTACTGCACTGAGCATGCCTTGGAGGGGATGGTGAATGTT
TCAAAGAAAAGGTGTGCCGGCGATGGTTGCTCTAAGATACCAAGCTACGG
TAAGGCTGGCAGCACGAAACGGGAGTACTGCGTTGAGCACGCATTGGAGG
GGATGGTTAATGTTTCGAAGAAAAGGTGTCCTGGGGATGTATTCTCTGAA
ATATCTCCCATTGAGGATGCCGGCAGCGCGAATCGGGATTACTGCGCAAA
ATATGCTATAGAGGGCATGATGTCTATTGTCCCGCACAACAGTGTGAGTT
CCGGGAAGCGGGTTTCGAAGATCGCTACATCGGCCGAATCCGTTTCGAAG
ATATCTATTACCGATAATAAAGTTAGAGCCACCTTTTCCGAGACTGAATT
AGGTCCTGTTTTGGTGAAGTCAGAGGTATCAGTAATTAAATCCAACTAAG
TAATTTTTTGGCAAAGGATCTTAGTAGGGAGTCTACTGGAGAACGGGAGC
AGTGATATTTCGCTCCTTGAATTTCATTTTTTAATTATGATTTCTTGAGC
ATGTTCAGTTCACCACGAGCAGGAGGCAGCCAAATCCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig7519:1348..3137+

>mRNA_H-elongata_contig7519.15199.1 ID=mRNA_H-elongata_contig7519.15199.1|Name=mRNA_H-elongata_contig7519.15199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3102bp|location=Sequence derived from alignment at H-elongata_contig7519:1348..3137+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCATGTTTCCAAGAAAAGGTGTGCCGGTGATGGATGTTCTAAGCA
AGCGAGCTACGGAAAGGCCGGAAGCACAAAACGGGAGTACTGTGCTAAGC
ATGCCTTGGAGGGGATGGTCAATGTTTCGAACAATATGTGTGCCGGTGAT
GAATGTTCAAAGCTAGCGAGCTACGGAAAGGCCGGAAGAAAGAAACGAAA
GTACTGCGCTAAACATGCCTTCGATGATATTGTCCACCTTTCAAACAAAA
TTTGTGCCAGCGATGGCTGCTCTAAGGTACCAAACTACGGGAATGCTGGC
AGCACGAAACGGGAGTACTGCGCCGGACATGCAATGGAAGGGATGGCCAA
TGTTTCGATCAAAAAGTGTGCCGGTGATGGATGTTCTAAGCTAGCGAGCT
ACGGAGAAGCCGGAAGTACGACAGTGGAGTACTGCGTTAAGCATGCCTTG
GCGGGTATGATCAATGTTTTGCACAAAAAGTGTGCCGCTGATGGATGTTC
CAAGCTTCCAAGCTACGGGAAGGCTGGAAGCACGAAAAAAGTATACTGCG
CTAAACATGCCTTGGATGATATGATCTACCTTTCAAGCAAAATTTGTGTC
GGCGATGGCTGCTCTAAGTTTTCAACCTACGGGAAGGCTGGCAGCACGAA
ACGGGAGTACTGCGCCGAACATGCATTGGAAGGGATGGTCAATGTTGCGA
TGAAAAAGTGTGCCGGTGATGGATGTTCTAAGCTACCAAGCTACGGAAAG
GCCGGAAGCACGAAACGAGAGTACTGTGCTGAGCATGCCTTGGAGGGGAT
GGTCAATGTTTTGCACAAAAGGTGTGCCGCTGATGGATGCTCAAAGCAAC
CGAACTTTGGAAAAGTCTGGAGCACGAAGCGAGAGTACTGCTCCGAGCAT
GCCTTGGAGGGGATGGTCAATATTTCGCAGAAAAGGTGCGCCGCTCATAG
ATGCTTGAAGTTTGCGAGCTTTGGGAAGACTATGAGCACGAAGAAAAAGT
ACTGCCCTGAGCATGCATTGGAGGGAATGGTTATTGTTTGGAACAGAAGG
TGTGCAGGTGATGGATGTGTTAAGGAGCCAAATTACGGAAAGGCAGGAAG
CACGAAACGGGAGTACTGCACTGAGCATGCCTTGGAGGGGATGGTGAATG
TTTCAAAGAAAAGGTGTGCCGGCGATGGTTGCTCTAAGATACCAAGCTAC
GGTAAGGCTGGCAGCACGAAACGGGAGTACTGCGTTGAGCACGCATTGGA
GGGGATGGTTAATGTTTCGAAGAAAAGGTGTCCTGGGGATGTATTCTCTG
AAATATCTCCCATTGAGGATGCCGGCAGCGCGAATCGGGATTACTGCGCA
AAATATGCTATAGAGGGCATGATGTCTATTGTCCCGCACAACAGTGTGAG
TTCCGGGAAGCGGGTTTCGAAGATCGCTACATCGGCCGAATCCGTTTCGA
AGATATCTATTACCGATAATAAAGTTAGAGCCACCTTTTCCGAGACTGAA
TTAGGTCCTGTTTTGGTGAAGTCAGAGGTATCAGTAATTAAATCCAACTA
AATGGTTCATGTTTCCAAGAAAAGGTGTGCCGGTGATGGATGTTCTAAGC
AAGCGAGCTACGGAAAGGCCGGAAGCACAAAACGGGAGTACTGTGCTAAG
CATGCCTTGGAGGGGATGGTCAATGTTTCGAACAATATGTGTGCCGGTGA
TGAATGTTCAAAGCTAGCGAGCTACGGAAAGGCCGGAAGAAAGAAACGAA
AGTACTGCGCTAAACATGCCTTCGATGATATTGTCCACCTTTCAAACAAA
ATTTGTGCCAGCGATGGCTGCTCTAAGGTACCAAACTACGGGAATGCTGG
CAGCACGAAACGGGAGTACTGCGCCGGACATGCAATGGAAGGGATGGCCA
ATGTTTCGATCAAAAAGTGTGCCGGTGATGGATGTTCTAAGCTAGCGAGC
TACGGAGAAGCCGGAAGTACGACAGTGGAGTACTGCGTTAAGCATGCCTT
GGCGGGTATGATCAATGTTTTGCACAAAAAGTGTGCCGCTGATGGATGTT
CCAAGCTTCCAAGCTACGGGAAGGCTGGAAGCACGAAAAAAGTATACTGC
GCTAAACATGCCTTGGATGATATGATCTACCTTTCAAGCAAAATTTGTGT
CGGCGATGGCTGCTCTAAGTTTTCAACCTACGGGAAGGCTGGCAGCACGA
AACGGGAGTACTGCGCCGAACATGCATTGGAAGGGATGGTCAATGTTGCG
ATGAAAAAGTGTGCCGGTGATGGATGTTCTAAGCTACCAAGCTACGGAAA
GGCCGGAAGCACGAAACGAGAGTACTGTGCTGAGCATGCCTTGGAGGGGA
TGGTCAATGTTTTGCACAAAAGGTGTGCCGCTGATGGATGCTCAAAGCAA
CCGAACTTTGGAAAAGTCTGGAGCACGAAGCGAGAGTACTGCTCCGAGCA
TGCCTTGGAGGGGATGGTCAATATTTCGCAGAAAAGGTGCGCCGCTCATA
GATGCTTGAAGTTTGCGAGCTTTGGGAAGACTATGAGCACGAAGAAAAAG
TACTGCCCTGAGCATGCATTGGAGGGAATGGTTATTGTTTGGAACAGAAG
GTGTGCAGGTGATGGATGTGTTAAGGAGCCAAATTACGGAAAGGCAGGAA
GCACGAAACGGGAGTACTGCACTGAGCATGCCTTGGAGGGGATGGTGAAT
GTTTCAAAGAAAAGGTGTGCCGGCGATGGTTGCTCTAAGATACCAAGCTA
CGGTAAGGCTGGCAGCACGAAACGGGAGTACTGCGTTGAGCACGCATTGG
AGGGGATGGTTAATGTTTCGAAGAAAAGGTGTCCTGGGGATGTATTCTCT
GAAATATCTCCCATTGAGGATGCCGGCAGCGCGAATCGGGATTACTGCGC
AAAATATGCTATAGAGGGCATGATGTCTATTGTCCCGCACAACAGTGTGA
GTTCCGGGAAGCGGGTTTCGAAGATCGCTACATCGGCCGAATCCGTTTCG
AAGATATCTATTACCGATAATAAAGTTAGAGCCACCTTTTCCGAGACTGA
ATTAGGTCCTGTTTTGGTGAAGTCAGAGGTATCAGTAATTAAATCCAACT
AA
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