mRNA_H-elongata_contig75182.15198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75182.15198.1
Unique NamemRNA_H-elongata_contig75182.15198.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75182.15198.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.490e-26
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 RPECEGTLRAVFRYVIQTLSQEDMVSYDCLKRWIKLRRATPKGSPERALFEQKKVQEFVKWLEDSES 201
            RPECEGTLRAVFRYV+Q+  QE+MVS DCL+RWI+LRRATP+GSPER LFEQK+VQ FV WLEDSES
Sbjct:  569 RPECEGTLRAVFRYVVQSFFQEEMVSEDCLERWIQLRRATPQGSPERGLFEQKEVQAFVAWLEDSES 635
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75182.15198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA1_ECTSI6.490e-2680.60eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75182contigH-elongata_contig75182:478..1409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog2880.D8LKA1
Preferred nameEIF2B5
KEGG koko:K03240,ko:K03859
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
GOsGO:0000003,GO:0001541,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0014002,GO:0014003,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0030900,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032045,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034284,GO:0034641,GO:0034645,GO:0034976,GO:0042063,GO:0042221,GO:0042552,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045727,GO:0045948,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048708,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060322,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1461@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B epsilon subunit
Ec32 orthologEc-01_009500.3
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75182.15198.1prot_H-elongata_contig75182.15198.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75182 547..1154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.9998546-UTR-H-elongata_contig75182:477..5461622931156.9998546-UTR-H-elongata_contig75182:477..546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75182 478..546 +
1691679721.6893249-UTR-H-elongata_contig75182:477..5461691679721.6893249-UTR-H-elongata_contig75182:477..546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75182 478..546 +
1622931157.0553956-UTR-H-elongata_contig75182:1154..14091622931157.0553956-UTR-H-elongata_contig75182:1154..1409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75182 1155..1409 +
1691679721.7283382-UTR-H-elongata_contig75182:1154..14091691679721.7283382-UTR-H-elongata_contig75182:1154..1409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75182 1155..1409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.0181851-CDS-H-elongata_contig75182:546..5901622931157.0181851-CDS-H-elongata_contig75182:546..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75182 547..590 +
1691679721.708579-CDS-H-elongata_contig75182:546..5901691679721.708579-CDS-H-elongata_contig75182:546..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75182 547..590 +
1622931157.0392294-CDS-H-elongata_contig75182:1006..11541622931157.0392294-CDS-H-elongata_contig75182:1006..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75182 1007..1154 +
1691679721.7188494-CDS-H-elongata_contig75182:1006..11541691679721.7188494-CDS-H-elongata_contig75182:1006..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75182 1007..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75182.15198.1

>prot_H-elongata_contig75182.15198.1 ID=prot_H-elongata_contig75182.15198.1|Name=mRNA_H-elongata_contig75182.15198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVSYDCLKRWIKLRRATPKGSPERALFEQKKVQEFVKWLEDSESEEDDDD
DEEDDDEEDEDND*
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mRNA from alignment at H-elongata_contig75182:478..1409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75182.15198.1 ID=mRNA_H-elongata_contig75182.15198.1|Name=mRNA_H-elongata_contig75182.15198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig75182:478..1409+ (Himanthalia elongata Himel1 dioecious)
AGGCCCGAGTGCGAGGGGACCTTGAGAGCGGTGTTCCGGTACGTGATTCA
GACCTTGTCGCAAGAAGACATGGTGTCGTACGACTGCCTCAAGCGCTGGA
TAAAGCTGCGTAGGTGAGAGAGACAGCATTACATTCTATGAAGGAGAGCA
GTACACAACTGAGCGGGCGATAAGCTCTTGTTGGGTTTTGTAGGGGAGGT
GTGAAGGCGACTGCAGCGCGGGCCGCGACGGTCGTTGTCTTGCCTGGCAG
TATTTTTTAAGTAGGTTGCCTCCTTTTGGTTATTATTTTGCCGAACCAGC
TCCTATCGGGCGCGCTCATTTAGCACACGCGATCGCGTGGAGGCAGTGGG
GCCAGCGTCGCAATCTCTGCTGTTTTTATGTCCCAAGTGGCCTTTGGGGC
GATCTTTATCTTTAGCAGCCTGTCTTCCTTCATAGGAGGGGCCCGCAGTG
GAGGCGATTTATCTCTTGTTCTTAGATCCCCTCCTTCGCCGCCATTTTTT
TGTTTTTGTTTTTTCCCCGCGGCGAACAGAGCGACGCCAAAGGGATCGCC
TGAGAGGGCACTGTTCGAGCAGAAGAAGGTGCAGGAGTTCGTAAAGTGGC
TGGAAGATTCCGAGTCCGAAGAGGATGACGACGATGACGAGGAGGATGAC
GACGAAGAAGACGAGGATAATGACTAAATAGTGACCGATGCCTTCGAAAG
AGCCGTTTGGGTGGAGTCGCGGACGGGGAAGATGGCGATGATAATAAGGA
GGACTAAAGAGTGGTGCGGTGCCGTAGTCGGCCCGATTGAAGGAAACTTG
ATCTATGTAAGGACACATACACCTAGAGCGATAATGACACTTTTGGTTGA
TACACCTCACAAGGGGTTTCCGTTGCTGGACTAGAACGGTCTTAAAAGGC
GGGTTCTCATCGTATCCCACCACCCAACTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig75182:478..1409+

>mRNA_H-elongata_contig75182.15198.1 ID=mRNA_H-elongata_contig75182.15198.1|Name=mRNA_H-elongata_contig75182.15198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig75182:478..1409+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTCGTACGACTGCCTCAAGCGCTGGATAAAGCTGCGTAGATGGTG
TCGTACGACTGCCTCAAGCGCTGGATAAAGCTGCGTAGAGCGACGCCAAA
GGGATCGCCTGAGAGGGCACTGTTCGAGCAGAAGAAGGTGCAGGAGTTCG
TAAAGTGGCTGGAAGATTCCGAGTCCGAAGAGGATGACGACGATGACGAG
GAGGATGACGACGAAGAAGACGAGGATAATGACTAAAGCGACGCCAAAGG
GATCGCCTGAGAGGGCACTGTTCGAGCAGAAGAAGGTGCAGGAGTTCGTA
AAGTGGCTGGAAGATTCCGAGTCCGAAGAGGATGACGACGATGACGAGGA
GGATGACGACGAAGAAGACGAGGATAATGACTAA
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