mRNA_H-elongata_contig75134.15193.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388MBJ4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MBJ4_CHABU) HSP 1 Score: 67.4 bits (163), Expect = 2.680e-11 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 10 CRITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
C I + C AH + L+++DI P+A+ T+ A+K +KFI + QK+LA+ K L P TRFGT+++M+ER
Sbjct: 157 CVIPWIPCAAHCLSLLLRDIAAQPFARQTMRDAQKIVKFICNKQKTLALHKIMKKALVLRRPTKTRFGTTYLMLER 232
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388KP53_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP53_CHABU) HSP 1 Score: 65.5 bits (158), Expect = 1.280e-10 Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
RI + C ++ + L+++DI PWA + K +KF+ + Q++LA+ K N L P +TRFGT+F+M+ER
Sbjct: 267 RIPSIPCASYWLSLLVRDIAAQPWAATVMRKGHKLVKFMHNKQRALALHKTMRNALVLKRPAETRFGTTFMMLER 341
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388K744_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K744_CHABU) HSP 1 Score: 64.7 bits (156), Expect = 2.370e-10 Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 25 LKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
+ C AH ++L+++DIV P+A+ T+ A K +KF+++ Q +LA+ K L P TRFGTS++M+ER
Sbjct: 60 IPCAAHCLNLLLRDIVAQPFARQTMRDAHKIVKFMRNKQNTLALHKIMKKALVLKRPVKTRFGTSYVMLER 130
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388L930_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L930_CHABU) HSP 1 Score: 62.4 bits (150), Expect = 1.540e-9 Identity = 27/77 (35.06%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKS--NGRALLLPNDTRFGTSFIMMER 237
+I + C AH++ L++KD+V +PW V AK +KFIK+H +++++F S + L++P + RF ++F M+ R
Sbjct: 199 KIPWVPCAAHTLSLLLKDMVKLPWVSKIVKRAKMMVKFIKNHHRTVSLFSACSLEERKTLIMPTEVRFASTFEMLNR 275
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388K7Y5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K7Y5_CHABU) HSP 1 Score: 60.1 bits (144), Expect = 1.010e-8 Identity = 25/75 (33.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
I + C AH + L+++DI WA + A K +KF+++ Q++ A+ +D + L DTRFGT+++M++R
Sbjct: 86 HIPWVPCAAHCLRLLLRDIASQDWASPIMKRAHKIVKFLRNKQRAAAIHRDMTRALELTRSADTRFGTTYMMLQR 160
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388JQR0_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQR0_CHABU) HSP 1 Score: 58.5 bits (140), Expect = 3.530e-8 Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
RI + C + L+++DI P + T+ A K +KF+++ QK+L + K L L DTRFGTS++M+ER
Sbjct: 409 RIPWIPCATQCLSLLLRDIAAQPIERQTMKDAHKIVKFMRNKQKALILHKVMKKAMVLKLLADTRFGTSYMMLER 483
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: UPI001C4E9CB2 (uncharacterized protein LOC122086762 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E9CB2) HSP 1 Score: 58.2 bits (139), Expect = 4.250e-8 Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDI-VGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMME 234
I +KC AH + L++KDI +PW K AK + F+ H+ LA+ ++ +N R L P TRF ++F+M++
Sbjct: 93 HIQRIKCAAHGVQLLLKDIDAEIPWVKEVFEKAKLIVTFMYKHETVLALMRETTNNRELKKPCKTRFASNFLMLK 167
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388KUD9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KUD9_CHABU) HSP 1 Score: 58.2 bits (139), Expect = 4.800e-8 Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 25 LKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
+ C H L+++DI WA + A +KF+++ Q++LA+ K N L P +TRFG +F+M+ER
Sbjct: 400 IPCATHCFSLLLRDIAAHSWAATVMRKAHTLVKFMRNKQRALALHKTMKNALVLKRPAETRFGRTFMMLER 470
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A015KZ91_RHIIW (BED-type domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KZ91_RHIIW) HSP 1 Score: 55.5 bits (132), Expect = 4.250e-7 Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGR-----ALLLPNDTRFGTSFIMM 231
I L C AHS++L+I DI+ +PWA +T+ KK +K+ K HQ AV K +L LP TR+G+S I +
Sbjct: 260 NIVFLGCVAHSLNLLIGDIMKLPWADSTIKNGKKIVKYFKSHQIPAAVLKRYQRSSYDKQISLKLPVKTRWGSSAICL 337
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A2Z6S2F6_9GLOM (Uncharacterized protein n=4 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6S2F6_9GLOM) HSP 1 Score: 53.9 bits (128), Expect = 1.490e-6 Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFK-----DKSNGRALLLPNDTRFGTSFIMM 231
++ L C AHS++L+I DI+ +PWA T+ KK +K+ K HQ A+ K + +L LP TR+G+S I +
Sbjct: 265 KVVFLGCVAHSLNLLIGDIMKLPWADRTMKNGKKIVKYFKSHQVPAAILKRYQLSNYDRRISLKLPVKTRWGSSAICL 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75134.15193.1 >prot_H-elongata_contig75134.15193.1 ID=prot_H-elongata_contig75134.15193.1|Name=mRNA_H-elongata_contig75134.15193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp MSGCRITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLback to top mRNA from alignment at H-elongata_contig75134:1145..1381- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75134.15193.1 ID=mRNA_H-elongata_contig75134.15193.1|Name=mRNA_H-elongata_contig75134.15193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig75134:1145..1381- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75134:1145..1381- >mRNA_H-elongata_contig75134.15193.1 ID=mRNA_H-elongata_contig75134.15193.1|Name=mRNA_H-elongata_contig75134.15193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig75134:1145..1381- (Himanthalia elongata Himel1 dioecious)back to top |