mRNA_H-elongata_contig75134.15193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75134.15193.1
Unique NamemRNA_H-elongata_contig75134.15193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388MBJ4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MBJ4_CHABU)

HSP 1 Score: 67.4 bits (163), Expect = 2.680e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   10 CRITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
            C I  + C AH + L+++DI   P+A+ T+  A+K +KFI + QK+LA+ K       L  P  TRFGT+++M+ER
Sbjct:  157 CVIPWIPCAAHCLSLLLRDIAAQPFARQTMRDAQKIVKFICNKQKTLALHKIMKKALVLRRPTKTRFGTTYLMLER 232          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388KP53_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP53_CHABU)

HSP 1 Score: 65.5 bits (158), Expect = 1.280e-10
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
            RI  + C ++ + L+++DI   PWA   +    K +KF+ + Q++LA+ K   N   L  P +TRFGT+F+M+ER
Sbjct:  267 RIPSIPCASYWLSLLVRDIAAQPWAATVMRKGHKLVKFMHNKQRALALHKTMRNALVLKRPAETRFGTTFMMLER 341          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388K744_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K744_CHABU)

HSP 1 Score: 64.7 bits (156), Expect = 2.370e-10
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   25 LKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
            + C AH ++L+++DIV  P+A+ T+  A K +KF+++ Q +LA+ K       L  P  TRFGTS++M+ER
Sbjct:   60 IPCAAHCLNLLLRDIVAQPFARQTMRDAHKIVKFMRNKQNTLALHKIMKKALVLKRPVKTRFGTSYVMLER 130          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388L930_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L930_CHABU)

HSP 1 Score: 62.4 bits (150), Expect = 1.540e-9
Identity = 27/77 (35.06%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKS--NGRALLLPNDTRFGTSFIMMER 237
            +I  + C AH++ L++KD+V +PW    V  AK  +KFIK+H +++++F   S    + L++P + RF ++F M+ R
Sbjct:  199 KIPWVPCAAHTLSLLLKDMVKLPWVSKIVKRAKMMVKFIKNHHRTVSLFSACSLEERKTLIMPTEVRFASTFEMLNR 275          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388K7Y5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K7Y5_CHABU)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-8
Identity = 25/75 (33.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
             I  + C AH + L+++DI    WA   +  A K +KF+++ Q++ A+ +D +    L    DTRFGT+++M++R
Sbjct:   86 HIPWVPCAAHCLRLLLRDIASQDWASPIMKRAHKIVKFLRNKQRAAAIHRDMTRALELTRSADTRFGTTYMMLQR 160          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388JQR0_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQR0_CHABU)

HSP 1 Score: 58.5 bits (140), Expect = 3.530e-8
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
            RI  + C    + L+++DI   P  + T+  A K +KF+++ QK+L + K       L L  DTRFGTS++M+ER
Sbjct:  409 RIPWIPCATQCLSLLLRDIAAQPIERQTMKDAHKIVKFMRNKQKALILHKVMKKAMVLKLLADTRFGTSYMMLER 483          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: UPI001C4E9CB2 (uncharacterized protein LOC122086762 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E9CB2)

HSP 1 Score: 58.2 bits (139), Expect = 4.250e-8
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDI-VGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMME 234
             I  +KC AH + L++KDI   +PW K     AK  + F+  H+  LA+ ++ +N R L  P  TRF ++F+M++
Sbjct:   93 HIQRIKCAAHGVQLLLKDIDAEIPWVKEVFEKAKLIVTFMYKHETVLALMRETTNNRELKKPCKTRFASNFLMLK 167          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A388KUD9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KUD9_CHABU)

HSP 1 Score: 58.2 bits (139), Expect = 4.800e-8
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   25 LKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGRALLLPNDTRFGTSFIMMER 237
            + C  H   L+++DI    WA   +  A   +KF+++ Q++LA+ K   N   L  P +TRFG +F+M+ER
Sbjct:  400 IPCATHCFSLLLRDIAAHSWAATVMRKAHTLVKFMRNKQRALALHKTMKNALVLKRPAETRFGRTFMMLER 470          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A015KZ91_RHIIW (BED-type domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KZ91_RHIIW)

HSP 1 Score: 55.5 bits (132), Expect = 4.250e-7
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFKDKSNGR-----ALLLPNDTRFGTSFIMM 231
             I  L C AHS++L+I DI+ +PWA +T+   KK +K+ K HQ   AV K           +L LP  TR+G+S I +
Sbjct:  260 NIVFLGCVAHSLNLLIGDIMKLPWADSTIKNGKKIVKYFKSHQIPAAVLKRYQRSSYDKQISLKLPVKTRWGSSAICL 337          
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Match: A0A2Z6S2F6_9GLOM (Uncharacterized protein n=4 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6S2F6_9GLOM)

HSP 1 Score: 53.9 bits (128), Expect = 1.490e-6
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   13 RITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSLAVFK-----DKSNGRALLLPNDTRFGTSFIMM 231
            ++  L C AHS++L+I DI+ +PWA  T+   KK +K+ K HQ   A+ K     +     +L LP  TR+G+S I +
Sbjct:  265 KVVFLGCVAHSLNLLIGDIMKLPWADRTMKNGKKIVKYFKSHQVPAAILKRYQLSNYDRRISLKLPVKTRWGSSAICL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75134.15193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A388MBJ4_CHABU2.680e-1140.79Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388KP53_CHABU1.280e-1037.33DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388K744_CHABU2.370e-1040.85Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L930_CHABU1.540e-935.06DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388K7Y5_CHABU1.010e-833.33Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388JQR0_CHABU3.530e-837.33DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
UPI001C4E9CB24.250e-836.00uncharacterized protein LOC122086762 n=1 Tax=Macad... [more]
A0A388KUD9_CHABU4.800e-835.21DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A015KZ91_RHIIW4.250e-739.74BED-type domain-containing protein n=3 Tax=Rhizoph... [more]
A0A2Z6S2F6_9GLOM1.490e-637.18Uncharacterized protein n=4 Tax=Rhizophagus clarus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75134contigH-elongata_contig75134:1145..1381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.528378-CDS-H-elongata_contig75134:1144..13811622931156.528378-CDS-H-elongata_contig75134:1144..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75134 1145..1381 -
1691679721.5132618-CDS-H-elongata_contig75134:1144..13811691679721.5132618-CDS-H-elongata_contig75134:1144..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75134 1145..1381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75134.15193.1prot_H-elongata_contig75134.15193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75134 1145..1381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75134.15193.1

>prot_H-elongata_contig75134.15193.1 ID=prot_H-elongata_contig75134.15193.1|Name=mRNA_H-elongata_contig75134.15193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MSGCRITGLKCGAHSIDLIIKDIVGMPWAKATVAAAKKCIKFIKHHQKSL
AVFKDKSNGRALLLPNDTRFGTSFIMMER
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mRNA from alignment at H-elongata_contig75134:1145..1381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75134.15193.1 ID=mRNA_H-elongata_contig75134.15193.1|Name=mRNA_H-elongata_contig75134.15193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig75134:1145..1381- (Himanthalia elongata Himel1 dioecious)
ATGTCCGGCTGCAGGATCACTGGTCTCAAGTGCGGCGCCCATAGCATCGA CCTTATCATTAAGGACATCGTCGGGATGCCTTGGGCAAAGGCCACGGTAG CAGCCGCGAAGAAGTGCATCAAGTTCATCAAGCATCACCAGAAGTCTCTG GCGGTGTTCAAGGACAAGAGCAACGGTCGAGCGCTCCTTCTGCCCAACGA CACTCGGTTTGGCACCTCCTTCATCATGATGGAGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig75134:1145..1381-

>mRNA_H-elongata_contig75134.15193.1 ID=mRNA_H-elongata_contig75134.15193.1|Name=mRNA_H-elongata_contig75134.15193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig75134:1145..1381- (Himanthalia elongata Himel1 dioecious)
ATGTCCGGCTGCAGGATCACTGGTCTCAAGTGCGGCGCCCATAGCATCGA
CCTTATCATTAAGGACATCGTCGGGATGCCTTGGGCAAAGGCCACGGTAG
CAGCCGCGAAGAAGTGCATCAAGTTCATCAAGCATCACCAGAAGTCTCTG
GCGGTGTTCAAGGACAAGAGCAACGGTCGAGCGCTCCTTCTGCCCAACGA
CACTCGGTTTGGCACCTCCTTCATCATGATGGAGCGTATGTCCGGCTGCA
GGATCACTGGTCTCAAGTGCGGCGCCCATAGCATCGACCTTATCATTAAG
GACATCGTCGGGATGCCTTGGGCAAAGGCCACGGTAGCAGCCGCGAAGAA
GTGCATCAAGTTCATCAAGCATCACCAGAAGTCTCTGGCGGTGTTCAAGG
ACAAGAGCAACGGTCGAGCGCTCCTTCTGCCCAACGACACTCGGTTTGGC
ACCTCCTTCATCATGATGGAGCGT
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