mRNA_H-elongata_contig75066.15187.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75066.15187.1
Unique NamemRNA_H-elongata_contig75066.15187.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75066.15187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75066contigH-elongata_contig75066:142..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.9396942-CDS-H-elongata_contig75066:142..3841622931155.9396942-CDS-H-elongata_contig75066:142..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75066 143..384 -
1691679721.2987278-CDS-H-elongata_contig75066:142..3841691679721.2987278-CDS-H-elongata_contig75066:142..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75066 143..384 -
1622931156.0034845-CDS-H-elongata_contig75066:639..6731622931156.0034845-CDS-H-elongata_contig75066:639..673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75066 640..673 -
1691679721.3117938-CDS-H-elongata_contig75066:639..6731691679721.3117938-CDS-H-elongata_contig75066:639..673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75066 640..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75066.15187.1prot_H-elongata_contig75066.15187.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75066 143..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75066.15187.1

>prot_H-elongata_contig75066.15187.1 ID=prot_H-elongata_contig75066.15187.1|Name=mRNA_H-elongata_contig75066.15187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
YWNCADIEITSDGTSSDPAPAPTPESSTLAPIADEDPTPETFAPFAEMST
METPAPVHEIATKETPSPIAEIIVSETPAPVYKYSVMLETPT
back to top

mRNA from alignment at H-elongata_contig75066:142..673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75066.15187.1 ID=mRNA_H-elongata_contig75066.15187.1|Name=mRNA_H-elongata_contig75066.15187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=532bp|location=Sequence derived from alignment at H-elongata_contig75066:142..673- (Himanthalia elongata Himel1 dioecious)
TACTGGAACTGCGCCGACATCGAGATCACGTCCGGTGAGTCGTCGGCCTT
CCGTTAATGGGCAGCGGTTGCCGAACATATAGTTATTTTTACCATGTCAA
GTGAAGTACTAGGAGGTAAAGCCCTGAACTATCAACAAAGCGGTTGGTAA
ATATCCTCTGGCTGGTATTAGAAGGAATATTTTACTATCTTCTAGGCCTA
TCTGGCACGAATGTTCTTACCCTACGCTTTTTTCACTCCAAACGGTATTG
TCCGGTCCTCCGGTGTTCTTATATTGCTCCCTCGAACAGACGGAACTTCC
TCCGATCCTGCTCCAGCACCGACTCCGGAATCTTCGACGCTTGCTCCGAT
CGCTGATGAAGACCCCACGCCGGAGACGTTCGCGCCTTTCGCAGAAATGT
CTACCATGGAGACTCCGGCACCCGTCCACGAGATCGCCACTAAAGAAACA
CCCTCGCCTATCGCCGAAATTATCGTGTCTGAGACGCCCGCGCCCGTCTA
CAAGTATTCGGTTATGCTGGAAACGCCCACGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75066:142..673-

>mRNA_H-elongata_contig75066.15187.1 ID=mRNA_H-elongata_contig75066.15187.1|Name=mRNA_H-elongata_contig75066.15187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig75066:142..673- (Himanthalia elongata Himel1 dioecious)
TACTGGAACTGCGCCGACATCGAGATCACGTCCGTACTGGAACTGCGCCG
ACATCGAGATCACGTCCGACGGAACTTCCTCCGATCCTGCTCCAGCACCG
ACTCCGGAATCTTCGACGCTTGCTCCGATCGCTGATGAAGACCCCACGCC
GGAGACGTTCGCGCCTTTCGCAGAAATGTCTACCATGGAGACTCCGGCAC
CCGTCCACGAGATCGCCACTAAAGAAACACCCTCGCCTATCGCCGAAATT
ATCGTGTCTGAGACGCCCGCGCCCGTCTACAAGTATTCGGTTATGCTGGA
AACGCCCACGACGGAACTTCCTCCGATCCTGCTCCAGCACCGACTCCGGA
ATCTTCGACGCTTGCTCCGATCGCTGATGAAGACCCCACGCCGGAGACGT
TCGCGCCTTTCGCAGAAATGTCTACCATGGAGACTCCGGCACCCGTCCAC
GAGATCGCCACTAAAGAAACACCCTCGCCTATCGCCGAAATTATCGTGTC
TGAGACGCCCGCGCCCGTCTACAAGTATTCGGTTATGCTGGAAACGCCCA
CG
back to top