mRNA_H-elongata_contig75022.15186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75022.15186.1
Unique NamemRNA_H-elongata_contig75022.15186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75022.15186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75022contigH-elongata_contig75022:23..2884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size778
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75022.15186.1prot_H-elongata_contig75022.15186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75022 23..2883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.8444774-CDS-H-elongata_contig75022:22..791622931155.8444774-CDS-H-elongata_contig75022:22..79Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 23..79 +
1691679721.2439423-CDS-H-elongata_contig75022:22..791691679721.2439423-CDS-H-elongata_contig75022:22..79Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 23..79 +
1622931155.8597193-CDS-H-elongata_contig75022:606..8311622931155.8597193-CDS-H-elongata_contig75022:606..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 607..831 +
1691679721.2525854-CDS-H-elongata_contig75022:606..8311691679721.2525854-CDS-H-elongata_contig75022:606..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 607..831 +
1622931155.8738663-CDS-H-elongata_contig75022:1374..15291622931155.8738663-CDS-H-elongata_contig75022:1374..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 1375..1529 +
1691679721.2700162-CDS-H-elongata_contig75022:1374..15291691679721.2700162-CDS-H-elongata_contig75022:1374..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 1375..1529 +
1622931155.8854408-CDS-H-elongata_contig75022:1962..21591622931155.8854408-CDS-H-elongata_contig75022:1962..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 1963..2159 +
1691679721.2797632-CDS-H-elongata_contig75022:1962..21591691679721.2797632-CDS-H-elongata_contig75022:1962..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 1963..2159 +
1622931155.898524-CDS-H-elongata_contig75022:2740..28831622931155.898524-CDS-H-elongata_contig75022:2740..2883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 2741..2883 +
1691679721.2885485-CDS-H-elongata_contig75022:2740..28831691679721.2885485-CDS-H-elongata_contig75022:2740..2883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75022 2741..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75022.15186.1

>prot_H-elongata_contig75022.15186.1 ID=prot_H-elongata_contig75022.15186.1|Name=mRNA_H-elongata_contig75022.15186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
VQTYRCLQHYLKNAPAIGADLVNNAYNAARAPSEAQFHSFMGRVQREKPA
TYNHLMNVLPLSLWTHHACKQGTRIGDTVTSNNVESLINMVGAEVRDKMP
LLMVESIVDQIASKCAAYAKTGSTSGELYTPHAVKTFDTERTLSNGLVAT
DYGGDTFKVESFGGVHPGSNTVDLKLGTPGTSEEGNHTMKCTCSFPARHG
IPCRHVLAAAKHLSKMDVARQLIDKGYKAEKYRAAYGNSSFRIRPPSLPT
LVIDPTLFP
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mRNA from alignment at H-elongata_contig75022:23..2884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75022.15186.1 ID=mRNA_H-elongata_contig75022.15186.1|Name=mRNA_H-elongata_contig75022.15186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2862bp|location=Sequence derived from alignment at H-elongata_contig75022:23..2884+ (Himanthalia elongata Himel1 dioecious)
GTGCAGACGTACCGGTGTTTACAGCACTATCTCAAGAACGCCCCTGCGAT
TGGCGCGGTGAGTAGTAGATTGGTATTTGCTTTCTTTGTTGTTTGTGTTG
CTCAAGCTTGAAGTGTACTGTTCTTGTGCCACTCATATTTTTCGCGCGGC
ACAGACTAGTTTCCATGTTACCGAATTCCATCGCCCCCGTGATGTCCTCG
TCAGTTTTTGTGAGTGAAGCTGACTTCATTAGTAGTGTCAATGTCTGTGG
TGGTAGTGGTGGTTATGGTGCAAAATGATATAACACATACGGTACCAGAT
AGGTGTTGAACGAAAACTACATGAGTGAGTGTAGATAGCTCTGAAGTTTT
GGTTGGTGTCGGTTTACCATAACAAAGGGTACGACACCCACTCATGCATA
CTACGTAGCATACCCCGCAGAGGAGCGCCGCTGTACTACAGCAGTAGTGC
TACTGTAGGCCCAGGGTCCAACCGTTTTCAGGAACATCGCTTGTTTTTGC
AGCAGCCTACAAACTATGGTTTGGCTGAACCTAAAAAATTGTCCATGACC
CCCCTTTCCCCCGCCCCTCCTTTTCCCCCCGCAGGACCTCGTCAACAACG
CGTATAACGCAGCGCGTGCCCCGTCCGAAGCGCAGTTCCACAGCTTCATG
GGGCGGGTGCAGAGGGAGAAGCCAGCCACGTACAACCACCTGATGAACGT
GCTGCCCTTGTCGCTATGGACCCATCATGCTTGCAAGCAGGGCACAAGAA
TCGGTGACACCGTCACGAGCAACAACGTCGAGTCCCTCATTAACATGGTT
GGCGCGGAGGTGATATTACTGAAGCTACGGTTACGGTGCGAGCGCCGTGC
GCAGTACCTCCTCCGCTAATTTGCTTCCTGGTGTAAGGTGTTGAGGGGGT
CTTAAGTGAAGGCCTTTGGGAAGGCCGTGTATTCTGCTCGCGGATAAATC
GTTCTGTTAGTTTGCTGTGTTCAAATATGGCACGGCCTCGGGGGCCCATG
CATAGCCTAGGCCCTTGCTTCTTAGGCGCCCTAAAGTCCTATTTTTCGGC
GCCCAAGCGGAAAAACCTCGATTTTGTTTTTTCAGCGCCGCGTCGTTATG
GCGTTCGGCGGCCAAATGACTTTTTTGACCCCTCAAACCTTTTTTTCGAC
CCCCCCAAAAAATATCGGCTTGGGCGGGTGACCAATCAGCGGGTTTTTGT
TGTTTTTTTCGGCTCTCCGGAAAACCGCCGGTTTTCGGCGCCCAACACTA
AATATTTCGGCGGGCGCCGAAGGCGCAACGGCCTAGCATAGCCGGGACCC
ATCTCTTGTTTTGCGACCCCGTGCTCCCTTCGACCGAACGTGTGATTTAC
AGGTCCGGGACAAGATGCCTCTCTTGATGGTGGAGAGTATCGTGGATCAG
ATCGCCTCGAAGTGCGCAGCGTACGCAAAGACCGGCAGCACCTCCGGCGA
GCTCTACACGCCGCACGCTGTGAAGACGTTCGACACGGAGAGAACCCTCA
GCAACGGGTGAGTCTTTGTGGTATTTCTGTCGTCTGCATCCAATATTCAG
TGTATACGAGTAGGTGGAGTGTTGTGTTGATGATTTCCGTACACCATCTT
AGTTGAAGTGATGCCGTAATGTTGTACCTTGCAAAAATGCACAAACTGCC
TTTGGTATTCTCACGAGAAAAGGCCCAAACTTTCATGCCGTTATTGTTGA
AAATACGATTACACACACAGCAGCAGCATTAAACGATCTCGGTACAAATT
CGTAAACGGCGCAAAAGTGTTACGGCTAATAAAGTGTATTTTTCTCCATA
GTCTCGTCTTATGGTTTGGTTCTCAATTATGTTGCGATCGAGTGCATGTA
CTCACATCTACCCAAGTATTTGGTGTCCTTCTCAGTTTTCGTCTGCGCTC
TTGCCGATGCTGTCGTCACCGCCCAAACCACGGGTCATAGGTTGGTCGCG
ACGGACTATGGAGGCGACACCTTCAAAGTCGAGAGCTTCGGAGGCGTGCA
CCCGGGGTCGAACACGGTTGACTTGAAGTTAGGGACTCCCGGGACTTCCG
AGGAAGGCAACCATACCATGAAGTGCACGTGCAGCTTCCCCGCGCGTCAC
GGGATTCCATGCCGCCATGTCCTGGCTGCCGCGAAACGTAAGCATTCTTT
CCATTCTTACAATTTCACGGTGTTGGTATACCGGCATTATTTCGTGTATA
AAGGTTGGGGCCCTAGAGCTACTACCTGCACAGTGTCGTGTACAACGATT
CGGACTCAAGAGCGTCATTGCTCCTGATGTGGATTGACTCGGTCTTTACA
CCGCTACTGCTGGTATTACTATGTATGCTCGTCATATCTAGTGCTTAAAA
GAAAAATGTGAACGGCACCTAAACCTTCTGATCCTGTTACATCTGCTATC
TGTGCTTGGAGCATGCTTTGAGCTGTACATGAGTTGGAGTTTCCAAATGG
CAAATAGTTTTGCCATGTCACACTTGGGGATGCATCTAGCACCCAACTAC
AGGAGGCCGAGTCAGTTTTTAGGAAGCCACACTGCTGGTGTTCCCGCGGA
ACACTTGTACATGCTTTTCATCCCTTTAAATCCCTTACATCATCGCCGGT
GCAAGACAAGTTTACTTGAGCCTGAGATGTGTTTTTTGTGGTTTGTTTGG
GAGCTCTGCCGCCGAAAATTAACGATTAACGCATCAGTGTCCTCCTTTTT
TGTTGCCTGTACTTTCAGACCTCAGCAAGATGGACGTGGCCCGCCAACTC
ATCGACAAAGGGTACAAGGCCGAGAAGTACAGGGCTGCCTACGGCAACAG
CAGCTTCCGCATTCGCCCACCCTCCCTCCCCACCCTAGTCATCGACCCCA
CCCTGTTCCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig75022:23..2884+

>mRNA_H-elongata_contig75022.15186.1 ID=mRNA_H-elongata_contig75022.15186.1|Name=mRNA_H-elongata_contig75022.15186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig75022:23..2884+ (Himanthalia elongata Himel1 dioecious)
GTGCAGACGTACCGGTGTTTACAGCACTATCTCAAGAACGCCCCTGCGAT
TGGCGCGGTGCAGACGTACCGGTGTTTACAGCACTATCTCAAGAACGCCC
CTGCGATTGGCGCGGACCTCGTCAACAACGCGTATAACGCAGCGCGTGCC
CCGTCCGAAGCGCAGTTCCACAGCTTCATGGGGCGGGTGCAGAGGGAGAA
GCCAGCCACGTACAACCACCTGATGAACGTGCTGCCCTTGTCGCTATGGA
CCCATCATGCTTGCAAGCAGGGCACAAGAATCGGTGACACCGTCACGAGC
AACAACGTCGAGTCCCTCATTAACATGGTTGGCGCGGAGGACCTCGTCAA
CAACGCGTATAACGCAGCGCGTGCCCCGTCCGAAGCGCAGTTCCACAGCT
TCATGGGGCGGGTGCAGAGGGAGAAGCCAGCCACGTACAACCACCTGATG
AACGTGCTGCCCTTGTCGCTATGGACCCATCATGCTTGCAAGCAGGGCAC
AAGAATCGGTGACACCGTCACGAGCAACAACGTCGAGTCCCTCATTAACA
TGGTTGGCGCGGAGGTCCGGGACAAGATGCCTCTCTTGATGGTGGAGAGT
ATCGTGGATCAGATCGCCTCGAAGTGCGCAGCGTACGCAAAGACCGGCAG
CACCTCCGGCGAGCTCTACACGCCGCACGCTGTGAAGACGTTCGACACGG
AGAGAACCCTCAGCAACGGGTCCGGGACAAGATGCCTCTCTTGATGGTGG
AGAGTATCGTGGATCAGATCGCCTCGAAGTGCGCAGCGTACGCAAAGACC
GGCAGCACCTCCGGCGAGCTCTACACGCCGCACGCTGTGAAGACGTTCGA
CACGGAGAGAACCCTCAGCAACGGGTTGGTCGCGACGGACTATGGAGGCG
ACACCTTCAAAGTCGAGAGCTTCGGAGGCGTGCACCCGGGGTCGAACACG
GTTGACTTGAAGTTAGGGACTCCCGGGACTTCCGAGGAAGGCAACCATAC
CATGAAGTGCACGTGCAGCTTCCCCGCGCGTCACGGGATTCCATGCCGCC
ATGTCCTGGCTGCCGCGAAACGTTGGTCGCGACGGACTATGGAGGCGACA
CCTTCAAAGTCGAGAGCTTCGGAGGCGTGCACCCGGGGTCGAACACGGTT
GACTTGAAGTTAGGGACTCCCGGGACTTCCGAGGAAGGCAACCATACCAT
GAAGTGCACGTGCAGCTTCCCCGCGCGTCACGGGATTCCATGCCGCCATG
TCCTGGCTGCCGCGAAACACCTCAGCAAGATGGACGTGGCCCGCCAACTC
ATCGACAAAGGGTACAAGGCCGAGAAGTACAGGGCTGCCTACGGCAACAG
CAGCTTCCGCATTCGCCCACCCTCCCTCCCCACCCTAGTCATCGACCCCA
CCCTGTTCCCGACCTCAGCAAGATGGACGTGGCCCGCCAACTCATCGACA
AAGGGTACAAGGCCGAGAAGTACAGGGCTGCCTACGGCAACAGCAGCTTC
CGCATTCGCCCACCCTCCCTCCCCACCCTAGTCATCGACCCCACCCTGTT
CCCG
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