mRNA_H-elongata_contig74952.15173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74952.15173.1
Unique NamemRNA_H-elongata_contig74952.15173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: D7G8W6_ECTSI (N-alpha-acetyltransferase 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W6_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 4.450e-78
Identity = 134/237 (56.54%), Postives = 167/237 (70.46%), Query Frame = 1
Query:    1 ISMEIRTASTLSEVDAQKMYELLTANMHDLYVEAGWGWDEAGKRREIKHRQARLLIARCG-----GTSASAGG-------EEG---------PGPAVRAEKSDAIAEQGTVE-KVIERGE-LAGFCHFRFSWDQDEG-DGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSKPTRHWGGR 639
            + +EIR+  TL + D Q MY+LL +NMHD+Y+ AGWGW++A K RE++HR +R LIARCG     G  A+A G       EEG          G A  +E++     +G  E K    GE +AG+C FRF+WDQDE  DG G+   +DVLYV+E+QVAPWA +RGLGRRMMQ +ELLAN+HGM+KVMLTVFK N QAMSFYTKKMKY +D+DSPSNW++PDEVYEILSKPTR    R
Sbjct:   74 VRLEIRSPKTLLDGDTQVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGTEDDSGPEAAAVGVARLRVAEEGVSESSAVNGAGGATDSEEAARARSRGGEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHGMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKPTRQGAAR 310          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: B7FVF1_PHATC (N-alpha-acetyltransferase 40 (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVF1_PHATC)

HSP 1 Score: 120 bits (301), Expect = 1.050e-30
Identity = 74/205 (36.10%), Postives = 113/205 (55.12%), Query Frame = 1
Query:    4 SMEIRTASTLSEVDAQKMYELLTANMHDLYVEAGWGWDEAGKRREIKHRQARLLIARCGGTSASAGGEEGPGPAVRAEKSDAIAEQGTVEKVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSKP 618
            S+    +  LSE D      L  ANM  +Y+++ WG D   K  E +HR+AR ++     ++A              E +  I   G  ++ +    LA F HFRF +D ++      + S  VLY++EIQVA   +++GLG+++M ++E +     MSK++LTVFK N QAM FYT+K+ Y +DE SPS + +  + YEILSKP
Sbjct:    3 SLSYVPSEDLSEEDLDSCLNLFRANMGQMYLDSSWGLDMTKKAAEFQHRKARFVLIHQINSNA--------------EDNHDI---GISDRPVTASTLAAFVHFRFEYDDND------DPSTIVLYIYEIQVAEAYRRKGLGQKLMALMEQIGCAVQMSKILLTVFKKNTQAMQFYTEKLCYGVDESSPSKFGKFAD-YEILSKP 183          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A7S1K199_9ALVE (N-alpha-acetyltransferase 40 n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K199_9ALVE)

HSP 1 Score: 122 bits (306), Expect = 1.660e-30
Identity = 79/224 (35.27%), Postives = 119/224 (53.12%), Query Frame = 1
Query:    1 ISMEIRTASTLSEVDAQKMYELLTANMHDLYVEA---GWGWDEAGKRREIKHRQARLLIARC-----GGTSASAGGEEGPGPAVRAEKSDAIAEQGTVEKVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDID----EDSPSNWNRPDEVYEILSKPTRHWGG 636
            +++E R AS +S  + Q+ ++L  ANM   Y EA   G GWD+  K +E+    AR ++AR         S + G + GP            A  GTV K  +  ++  F H+RF           IE  ++V Y+ E+QV    + +GLGR +MQ+LEL++ K  M+K+M T FKAN +A+SFY  K+KY +D    E++P  ++  +  YEILSK     GG
Sbjct:   60 VTIEDRRASVMSRGEIQRCFDLTKANMETFYDEAQPGGKGWDDRAKWKELSEDDARFILARSVPSQEAAPSTADGSDAGP------------ATNGTVSKDGDGSDIVAFVHYRFE----------IELEEEVCYIWELQVDNKTRSKGLGRFLMQLLELVSRKLQMAKMMCTCFKANARALSFYKDKLKYVVDHTSPEENPDEFDEEEMTYEILSKSLPAPGG 261          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A7S0P602_9EUKA (N-alpha-acetyltransferase 40 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P602_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 2.360e-29
Identity = 77/207 (37.20%), Postives = 106/207 (51.21%), Query Frame = 1
Query:    1 ISMEIRTASTLSEVDAQKMYELLTANMHDLYVEAGWGWDEAGKRREIKHRQARLLIARCGGTSASAGGEEGPGPAVRAEKSD-AIAEQGTVEKVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSKP 618
            + +E  +   L E D      LL +NM  LY  + WGWDEA KR  +     R+++ R   T           P + A + D  I E              GF H  F+          IED   VLYV E+Q+    +++GLG+ +MQ+ E+LA K+GM  +MLTVFK + +A+ FY +K++Y IDE SPS WN  D  YEILSKP
Sbjct:   68 VRVEAFSGPQLCESDIDACMSLLRSNMGTLYERSSWGWDEATKRAGLVDAATRVVLLRMQPTR----------PDLAACEDDWVIVEHPEHPPTPPPQRNVGFLHLSFT----------IEDERPVLYVLELQLEEEVREKGLGKFLMQLAEVLARKYGMEALMLTVFKTHKKALDFYRQKLRYAIDESSPSLWNH-DADYEILSKP 253          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A7S1ZW93_TRICV (N-alpha-acetyltransferase 40 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZW93_TRICV)

HSP 1 Score: 116 bits (290), Expect = 9.950e-29
Identity = 76/204 (37.25%), Postives = 107/204 (52.45%), Query Frame = 1
Query:   28 TLSEVDAQKMYELLTANMHDLYVEAGWGWDEAGKRREIKHRQARLLIARCGGTSASAGGEEGPGPAVRAEKSDAIAEQGTVEKVIE--------RGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSK 615
            +L+ V ++   +L   NM ++Y  + WG D   K  E +H +AR L+                      EK DA    G +EK +E        + EL  F HFRF  D D+          +VLY++E+QV+P   +RGLG+++M ++E +A K GM KV+LTVFKAN  AM+FY   M Y +DE SPS +   D  YEILSK
Sbjct:   37 SLAPVASKSCLDLFETNMAEMYQRSSWGLDLRKKADEFRHERARFLLL---------------------EKVDA----GNMEKSVELMGESSEGKNELLAFGHFRFEPDDDD------HPKLEVLYLYELQVSPLYHRRGLGQKLMSIMEDVAKKRGMKKVVLTVFKANVAAMTFYKDGMVYGVDETSPSKFGE-DADYEILSK 208          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A1V9YDV1_9STRA (N-alpha-acetyltransferase 40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDV1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.100e-27
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  274 KVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSKP 618
            + +  G++ GF HFRF  D          D  +VLYV+E+Q+ P  +++GLG+R+MQ+LEL+  K+ M  ++LTVFKAN  A++FYT K+ YDIDE SPS     DE YEILSKP
Sbjct:   96 RYLVAGDVDGFLHFRFVED----------DGAEVLYVYELQIGPSLQRKGLGKRLMQLLELIGRKYKMKWILLTVFKANTSALTFYTHKLGYDIDETSPSQHGNLDESYEILSKP 200          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: B8BWT3_THAPS (N-alpha-acetyltransferase 40 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWT3_THAPS)

HSP 1 Score: 111 bits (278), Expect = 2.540e-26
Identity = 71/193 (36.79%), Postives = 106/193 (54.92%), Query Frame = 1
Query:   49 QKMYELLTANMHDLYVEAGWGWDEAGKRREIKHRQARLLIARCGGTSASAGGEEGPGPAVRAEKSDAIAEQ---GTVEKVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEV-YEILSK 615
            ++  EL   NM  +Y  + WG D   KR+E+ H  AR L+     TS     E+  G A     +  +A+     T        ++ GF HFR+  + DE        +  + Y++E+Q+ P  ++ G+G+R+M ++ELL+ K  M KVMLTVFK N++AM FY  KMKY +DE SPSN+   ++  YEILSK
Sbjct:   82 EQCLELFEMNMGAMYRRSSWGLDMDEKRKELMHVDARFLVVVE--TSNVEKEEDXXGGATTRVDAVEVADDTDGATATLTTADDKVLGFTHFRYEPNDDESS----TPTQPITYLYELQIHPTLQKLGMGKRLMTIVELLSFKCHMEKVMLTVFKMNDRAMGFYLNKMKYGVDECSPSNYEGCEDCDYEILSK 268          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A0G4EPU0_VITBC (N-alpha-acetyltransferase 40 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EPU0_VITBC)

HSP 1 Score: 115 bits (288), Expect = 4.440e-26
Identity = 75/209 (35.89%), Postives = 110/209 (52.63%), Query Frame = 1
Query:    1 ISMEIRTASTLSEVDAQKMYELLTANMHDLYVEA---GWGWDEAGKRREIKHRQARLLIARC-----GGTSASAGGEEGPGPAVRAEKSDAIAEQGTVEKVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYE 603
            +++E R AS +S  + Q+ ++L  ANM   Y EA   G GWD+  K +E+    AR ++AR         S + G + GP            A  GTV K  +  ++  F H+RF           IE  ++V Y+ E+QV    + +GLGR +MQ+LEL++ K  M+K+M T FKAN +A+SFY  K+KY +D  SP     PDE  E
Sbjct:   60 VTIEDRRASVMSRGEIQRCFDLTKANMETFYDEAQPGGKGWDDRAKWKELSEDDARFILARSVPSQEAAPSTADGSDAGP------------ATNGTVSKDGDGSDIVAFVHYRFE----------IELEEEVCYIWELQVDNKTRSKGLGRFLMQLLELVSRKLQMAKMMCTCFKANARALSFYKDKLKYVVDHTSPEE--NPDEFDE 244          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A485KW98_9STRA (N-alpha-acetyltransferase 40 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW98_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.240e-25
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  268 VEKVIERGELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSKP 618
            VE+    G +  F HFRF  D          D D V+YV+EIQV    +++GLG+R+MQVLEL+  KH M  ++LTVFK N  AM FYTK M +DIDE SPS      E YEILSKP
Sbjct:  106 VERASSPGHIEAFLHFRFLED----------DGDVVVYVYEIQVGAGMQRQGLGKRLMQVLELIGRKHKMKFILLTVFKTNVHAMQFYTKTMGFDIDETSPSANGDDTESYEILSKP 212          
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Match: A0A024UNC3_9STRA (N-alpha-acetyltransferase 40 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNC3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.160e-22
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  277 VIER--GELAGFCHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLELLANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEILSK 615
            V+ER  G++  F HFRF   +DEGD         V+YV+EIQV P  +++GLG+R+MQ+L+L+  K+ M  ++LTVFK+N  AM FYT+KM + ID+ SPS      E YEILSK
Sbjct:  105 VVERTPGQIDAFLHFRFV--EDEGDA--------VVYVYEIQVGPGMQRQGLGKRLMQLLQLIGRKYKMKLILLTVFKSNIAAMKFYTEKMGFVIDDTSPSAQGDTSESYEILSK 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74952.15173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W6_ECTSI4.450e-7856.54N-alpha-acetyltransferase 40 n=2 Tax=Ectocarpus Ta... [more]
B7FVF1_PHATC1.050e-3036.10N-alpha-acetyltransferase 40 (Fragment) n=1 Tax=Ph... [more]
A0A7S1K199_9ALVE1.660e-3035.27N-alpha-acetyltransferase 40 n=1 Tax=Vitrella bras... [more]
A0A7S0P602_9EUKA2.360e-2937.20N-alpha-acetyltransferase 40 n=1 Tax=Calcidiscus l... [more]
A0A7S1ZW93_TRICV9.950e-2937.25N-alpha-acetyltransferase 40 n=1 Tax=Trieres chine... [more]
A0A1V9YDV1_9STRA9.100e-2748.70N-alpha-acetyltransferase 40 n=1 Tax=Achlya hypogy... [more]
B8BWT3_THAPS2.540e-2636.79N-alpha-acetyltransferase 40 n=1 Tax=Thalassiosira... [more]
A0A0G4EPU0_VITBC4.440e-2635.89N-alpha-acetyltransferase 40 n=1 Tax=Vitrella bras... [more]
A0A485KW98_9STRA5.240e-2550.43N-alpha-acetyltransferase 40 n=1 Tax=Aphanomyces s... [more]
A0A024UNC3_9STRA1.160e-2248.70N-alpha-acetyltransferase 40 n=1 Tax=Aphanomyces i... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74952contigH-elongata_contig74952:497..1860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue8.5e-63
Seed eggNOG ortholog2880.D7G8W6
Preferred nameNAT4
KEGG koko:K20405,ko:K20794
KEGG Pathwayko04150,map04150
GOsGO:0003674,GO:0003824,GO:0004402,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0008080,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010485,GO:0010556,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018205,GO:0018206,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031365,GO:0031935,GO:0033043,GO:0033044,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043967,GO:0043968,GO:0043998,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0051276,GO:0051604,GO:0060255,GO:0060968,GO:0061187,GO:0061733,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1902275,GO:1903506,GO:1990189,GO:2000112,GO:2001141
EggNOG free text desc.H2A histone acetyltransferase activity
EggNOG OGsKOG2488@1,KOG2488@2759
EC2.3.1.257
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-15_004510.1
Exons4
Model size642
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74952.15173.1prot_H-elongata_contig74952.15173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74952 503..1860 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.1829557-UTR-H-elongata_contig74952:496..5021622931154.1829557-UTR-H-elongata_contig74952:496..502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74952 497..502 +
1691679720.5918841-UTR-H-elongata_contig74952:496..5021691679720.5918841-UTR-H-elongata_contig74952:496..502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74952 497..502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.1999068-CDS-H-elongata_contig74952:502..7191622931154.1999068-CDS-H-elongata_contig74952:502..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 503..719 +
1691679720.605117-CDS-H-elongata_contig74952:502..7191691679720.605117-CDS-H-elongata_contig74952:502..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 503..719 +
1622931154.2153547-CDS-H-elongata_contig74952:857..10871622931154.2153547-CDS-H-elongata_contig74952:857..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 858..1087 +
1691679720.613212-CDS-H-elongata_contig74952:857..10871691679720.613212-CDS-H-elongata_contig74952:857..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 858..1087 +
1622931154.2296305-CDS-H-elongata_contig74952:1396..14821622931154.2296305-CDS-H-elongata_contig74952:1396..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 1397..1482 +
1691679720.6215181-CDS-H-elongata_contig74952:1396..14821691679720.6215181-CDS-H-elongata_contig74952:1396..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 1397..1482 +
1622931154.2437632-CDS-H-elongata_contig74952:1757..18601622931154.2437632-CDS-H-elongata_contig74952:1757..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 1758..1860 +
1691679720.629806-CDS-H-elongata_contig74952:1757..18601691679720.629806-CDS-H-elongata_contig74952:1757..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74952 1758..1860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74952.15173.1

>prot_H-elongata_contig74952.15173.1 ID=prot_H-elongata_contig74952.15173.1|Name=mRNA_H-elongata_contig74952.15173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MEIRTASTLSEVDAQKMYELLTANMHDLYVEAGWGWDEAGKRREIKHRQA
RLLIARCGGTSASAGGEEGPGPAVRAEKSDAIAEQGTVEKVIERGELAGF
CHFRFSWDQDEGDGGGIEDSDDVLYVHEIQVAPWAKQRGLGRRMMQVLEL
LANKHGMSKVMLTVFKANNQAMSFYTKKMKYDIDEDSPSNWNRPDEVYEI
LSKPTRHWGGR*
back to top

mRNA from alignment at H-elongata_contig74952:497..1860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74952.15173.1 ID=mRNA_H-elongata_contig74952.15173.1|Name=mRNA_H-elongata_contig74952.15173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1364bp|location=Sequence derived from alignment at H-elongata_contig74952:497..1860+ (Himanthalia elongata Himel1 dioecious)
ATCAGCATGGAGATCCGAACGGCGTCCACTCTCTCCGAGGTCGACGCGCA GAAGATGTACGAGCTGCTAACGGCAAACATGCACGACCTCTACGTCGAGG CTGGGTGGGGCTGGGACGAGGCGGGAAAGAGGCGCGAGATTAAGCACCGA CAAGCCCGTCTCTTAATTGCTCGCTGCGGTGGCACAAGCGCGAGCGCGGG AGGGGAAGAGGGGCCCGGGCCCGGTGCAACCCCGCTTGGAAAAGCTTCCT CGTCGGCGGGAGCGGAAGCTGAAGTGGGGAGCGACGGCGAACGAATAAGG TTCGTGAAGAAGCCCAAGGGTGACGCGACGGTGACGAGTGTGAGCACGGC CGACTGCCAAGCTGTTCGTGCGGAAAAGAGTGACGCCATCGCCGAGCAAG GGACGGTCGAGAAGGTGATAGAGCGGGGTGAGCTCGCAGGATTTTGCCAC TTCCGCTTCTCTTGGGATCAGGACGAAGGCGATGGTGGGGGAATCGAAGA TTCGGACGACGTGTTGTACGTTCACGAGATTCAGGTGGCGCCGTGGGCGA AACAAAGGGGTCTGGGCCGACGCATGATGCAGGTGCTGGAGGTGAGAGCT CTCTCTCTCCTCTAAATACTTCTTGAAATACAAAATTATTAGAGCCTAGC TCTGGATGAGTCAAGACAAAGTAGACGTGATCAAGGCTATTGTGGAGAAA AGGATTGCTGTACTTGTCTCGAAACAGTTTTTATCGCGTGGCCGGTTGTC ATTGCAATCCAGGTTTGTCGTTAAAATTTTCGTGTCGAGGAAAAGTAGTT TCGGGCTTGCGGTGTTCCAAGGCTATAACTGAAAGCCTATTTCCAAGTTC CTAAAACCCTTATGTCGCTACCTCGTCATCCTTTTTTACCCGCCCCAAAG CTTTTGGCGAACAAACACGGCATGTCCAAGGTGATGCTGACCGTCTTCAA GGCGAACAATCAGGCCATGTCGTTCTACACGAAGAAGTGAGTCTCTACCG AAAGGCACCACCGCCTTTGGAAGGAAGGAAAATAGTTGGGGCAGAGAGTT CCATACCTCGAGAAGCGATGAGATAATTAGGAACGTACGCGCTATGTGCG TCCTCTGTCCCACTACCCTAAACCATCCCACCAGTTATACGCGACTATCG GTGCCACACCGCTGTCGAAAGAAGCCCTCAAACTCCCGTGTCCGCCGCCT GGATTCGTAAGCGCACCCGCTCGTGGCTTTGGTCCCCTTGAAATACATGG CACGCGCACAGGATGAAATACGACATCGACGAGGATTCGCCGTCAAACTG GAATCGCCCCGACGAAGTCTATGAGATCCTGAGCAAGCCGACCAGGCACT GGGGTGGAAGGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74952:497..1860+

>mRNA_H-elongata_contig74952.15173.1 ID=mRNA_H-elongata_contig74952.15173.1|Name=mRNA_H-elongata_contig74952.15173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig74952:497..1860+ (Himanthalia elongata Himel1 dioecious)
ATGGAGATCCGAACGGCGTCCACTCTCTCCGAGGTCGACGCGCAGAAGAT
GTACGAGCTGCTAACGGCAAACATGCACGACCTCTACGTCGAGGCTGGGT
GGGGCTGGGACGAGGCGGGAAAGAGGCGCGAGATTAAGCACCGACAAGCC
CGTCTCTTAATTGCTCGCTGCGGTGGCACAAGCGCGAGCGCGGGAGGGGA
AGAGGGGCCCGGGCCCGATGGAGATCCGAACGGCGTCCACTCTCTCCGAG
GTCGACGCGCAGAAGATGTACGAGCTGCTAACGGCAAACATGCACGACCT
CTACGTCGAGGCTGGGTGGGGCTGGGACGAGGCGGGAAAGAGGCGCGAGA
TTAAGCACCGACAAGCCCGTCTCTTAATTGCTCGCTGCGGTGGCACAAGC
GCGAGCGCGGGAGGGGAAGAGGGGCCCGGGCCCGCTGTTCGTGCGGAAAA
GAGTGACGCCATCGCCGAGCAAGGGACGGTCGAGAAGGTGATAGAGCGGG
GTGAGCTCGCAGGATTTTGCCACTTCCGCTTCTCTTGGGATCAGGACGAA
GGCGATGGTGGGGGAATCGAAGATTCGGACGACGTGTTGTACGTTCACGA
GATTCAGGTGGCGCCGTGGGCGAAACAAAGGGGTCTGGGCCGACGCATGA
TGCAGGTGCTGGAGCTGTTCGTGCGGAAAAGAGTGACGCCATCGCCGAGC
AAGGGACGGTCGAGAAGGTGATAGAGCGGGGTGAGCTCGCAGGATTTTGC
CACTTCCGCTTCTCTTGGGATCAGGACGAAGGCGATGGTGGGGGAATCGA
AGATTCGGACGACGTGTTGTACGTTCACGAGATTCAGGTGGCGCCGTGGG
CGAAACAAAGGGGTCTGGGCCGACGCATGATGCAGGTGCTGGAGCTTTTG
GCGAACAAACACGGCATGTCCAAGGTGATGCTGACCGTCTTCAAGGCGAA
CAATCAGGCCATGTCGTTCTACACGAAGAACTTTTGGCGAACAAACACGG
CATGTCCAAGGTGATGCTGACCGTCTTCAAGGCGAACAATCAGGCCATGT
CGTTCTACACGAAGAAGATGAAATACGACATCGACGAGGATTCGCCGTCA
AACTGGAATCGCCCCGACGAAGTCTATGAGATCCTGAGCAAGCCGACCAG
GCACTGGGGTGGAAGGTAGGATGAAATACGACATCGACGAGGATTCGCCG
TCAAACTGGAATCGCCCCGACGAAGTCTATGAGATCCTGAGCAAGCCGAC
CAGGCACTGGGGTGGAAGGTAG
back to top