mRNA_H-elongata_contig74869.15164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74869.15164.1
Unique NamemRNA_H-elongata_contig74869.15164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74869.15164.1 vs. uniprot
Match: A0A6H5KM98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM98_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.870e-70
Identity = 143/278 (51.44%), Postives = 170/278 (61.15%), Query Frame = 1 
Query:    1 DSRPMLVPGVMLTISCRGAEAIMRFAEEVQQKDGEHVGGREKAALDIVAEAIMQVPFVTRRDGPRTGLLVTKLQATVRGWLARRLARSMILRGGCRREIDDRSGAWVYVWSCDPASP--ENTTYPPTGSSYRESGEADGGVPYWS--------------WRPPAVLKSESLPSPRAARRRAETEERKKNATLTFFYSLLESQREYLCLRGAREESLVELAAVVRLVERAEKSLRDVSLDHRFGSNSSPGRISIRVLHPRGGEPWDGTRDRIAADIAAA 786
            DSRP LVPG MLT+S     A+  FAEEV  +  E+   R K AL IV EA  +V F  RR+ PRTG+LV    A VRGWLARRLAR ++LRGGCRRE+D  SGAW YVWS   A P     T  P  +SY  +G   GG  Y S              W PPA+LK+ESLPSPRAA RR E E RK+ A L    SLL+ QR  L  R AR   L+ L  VV+LVERA  SL D +L   FG++S P  IS++VLHPRGGEPWDG R+ +  +I +A
Sbjct:   91 DSRPKLVPGAMLTLSNTAVAAVKAFAEEVLAE--ENPAQRAKKALAIVKEATTEVAFANRRNHPRTGVLV----AVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPTATAGPGRASY--AGGGSGGXXYRSPVXXXXXXEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEDAALSC-FGTDSEPLAISVKVLHPRGGEPWDGAREAVVTEIISA 359
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BLAST of mRNA_H-elongata_contig74869.15164.1 vs. uniprot
Match: D7G1T7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T7_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.120e-63
Identity = 139/276 (50.36%), Postives = 166/276 (60.14%), Query Frame = 1 
Query:    1 DSRPMLVPGVMLTISCRGAEAIMRFAEEVQQKDGEHVGGREKAALDIVAEAIMQVPFVTRRDGPRTGLLVTKLQATVRGWLARRLARSMILRGGCRREIDDRSGAWVYVWS---CDPASPENTTYPPT---------GSSYRESG-EADGGVPYW-SWRPPAVLKSESLPSPRAARRRAETEERKKNATLTFFYSLLESQREYLCLRGAREESLVELAAVVRLVERAEKSLRDVSLDHRFGSNSSPGRISIRVLHPRGGEPWDGTRDRIAADIAAA 786
            DSRP LVPG MLT S     A+  FAEEV  +  E    R   A  IV EA  +V F  RR+ PRT +LVT+LQA VRGWLARRLAR ++LRGGCRRE+D  SGAW YVWS     P +P      P          G  YR      DGG   + +W PPA+LK+ESLPSPRAA RR E E RK+ A L    SLL+ QR  L  R AR   L+ L  VV+LVERA  SL + +L   FG+ S P  IS++VLHPRGGEP DG R+ +  +I +A
Sbjct:   88 DSRPKLVPGAMLTFSNTAVAAVKAFAEEVLAE--EDPPRRATKAAAIVKEATTEVSFANRRNHPRTEVLVTRLQAVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPGAAATAPGRASYAGGIGGGGYRSPACGGDGGEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEEAALTC-FGTGSEPLAISVKVLHPRGGEPGDGAREAVVTEIMSA 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74869.15164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM98_9PHAE1.870e-7051.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T7_ECTSI2.120e-6350.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74869contigH-elongata_contig74869:809..2879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size844
Cds size831
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.0996828-UTR-H-elongata_contig74869:808..8201622931153.0996828-UTR-H-elongata_contig74869:808..820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74869 809..820 +
1691679720.0672145-UTR-H-elongata_contig74869:808..8201691679720.0672145-UTR-H-elongata_contig74869:808..820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74869 809..820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.11763-CDS-H-elongata_contig74869:820..8921622931153.11763-CDS-H-elongata_contig74869:820..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 821..892 +
1691679720.085082-CDS-H-elongata_contig74869:820..8921691679720.085082-CDS-H-elongata_contig74869:820..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 821..892 +
1622931153.1341538-CDS-H-elongata_contig74869:1024..11501622931153.1341538-CDS-H-elongata_contig74869:1024..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 1025..1150 +
1691679720.0973196-CDS-H-elongata_contig74869:1024..11501691679720.0973196-CDS-H-elongata_contig74869:1024..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 1025..1150 +
1622931153.1513531-CDS-H-elongata_contig74869:1452..18041622931153.1513531-CDS-H-elongata_contig74869:1452..1804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 1453..1804 +
1691679720.1090004-CDS-H-elongata_contig74869:1452..18041691679720.1090004-CDS-H-elongata_contig74869:1452..1804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 1453..1804 +
1622931153.1642947-CDS-H-elongata_contig74869:2028..21551622931153.1642947-CDS-H-elongata_contig74869:2028..2155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 2029..2155 +
1691679720.1222167-CDS-H-elongata_contig74869:2028..21551691679720.1222167-CDS-H-elongata_contig74869:2028..2155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 2029..2155 +
1622931153.1834795-CDS-H-elongata_contig74869:2550..26711622931153.1834795-CDS-H-elongata_contig74869:2550..2671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 2551..2671 +
1691679720.1396117-CDS-H-elongata_contig74869:2550..26711691679720.1396117-CDS-H-elongata_contig74869:2550..2671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 2551..2671 +
1622931153.201475-CDS-H-elongata_contig74869:2846..28791622931153.201475-CDS-H-elongata_contig74869:2846..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 2847..2879 +
1691679720.1505058-CDS-H-elongata_contig74869:2846..28791691679720.1505058-CDS-H-elongata_contig74869:2846..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74869 2847..2879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74869.15164.1prot_H-elongata_contig74869.15164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74869 821..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74869.15164.1

>prot_H-elongata_contig74869.15164.1 ID=prot_H-elongata_contig74869.15164.1|Name=mRNA_H-elongata_contig74869.15164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MLVPGVMLTISCRGAEAIMRFAEEVQQKDGEHVGGREKAALDIVAEAIMQ
VPFVTRRDGPRTGLLVTKLQATVRGWLARRLARSMILRGGCRREIDDRSG
AWVYVWSCDPASPENTTYPPTGSSYRESGEADGGVPYWSWRPPAVLKSES
LPSPRAARRRAETEERKKNATLTFFYSLLESQREYLCLRGAREESLVELA
AVVRLVERAEKSLRDVSLDHRFGSNSSPGRISIRVLHPRGGEPWDGTRDR
IAADIAAARKQKKEEKAKQKVRRPNFH
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mRNA from alignment at H-elongata_contig74869:809..2879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74869.15164.1 ID=mRNA_H-elongata_contig74869.15164.1|Name=mRNA_H-elongata_contig74869.15164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2071bp|location=Sequence derived from alignment at H-elongata_contig74869:809..2879+ (Himanthalia elongata Himel1 dioecious)
GACTCTCGGCCGATGCTGGTTCCGGGGGTCATGTTGACCATTTCCTGTCG
AGGCGCTGAGGCCATCATGCGATTTGCGGAAGAAGTGAGCTAGCTCCCTC
TGTGCTGTGCGCAGGTCTTGAACCTCCGTGTATCCTCTCGGACATCTCGG
GCTTTAGTCAGATTCCGAAATATAATTGGAAGCTTTTTAGTCCCCTGCCG
ATGCCAACCATAACAGGTTCAACAAAAAGACGGCGAGCACGTCGGGGGAA
GGGAGAAGGCGGCGCTTGACATCGTTGCGGAGGCGATCATGCAGGTGCCG
TTCGTGACTCGGCGGGATGGTCCTCGCACAGGACTTCTCGTGGTGAGTGT
GAACTTTTGGCCTTCTCGACGACAACGGAAGATGCATTAAGAGACTCACC
GGTTCCATCGCCTCGGAGTTAACATGAAGCGCTATCCCGCAGCTGCTGAA
ACACTTACGTGAGTTCTAAGGGTTTCCTTCATGTGCGTATACAGAACCGT
GGAAAACCGGTATTCAGAAGATCGATTTTTTTATGGCGGCACGCGCGCGT
GGTGCGTGGTGCAGTTCCATCTTCCGTGTCCCGTCCCGGATAACCATCTG
AGACGCCACCCTCTCGCGCCCTCCCTAACTCCCGCGATGTTAAGACCAAG
CTACAAGCCACGGTGCGCGGATGGCTTGCACGACGCCTCGCCCGGTCGAT
GATTCTCCGCGGCGGCTGTCGTCGTGAGATAGACGATCGCTCAGGCGCGT
GGGTGTACGTCTGGTCGTGCGACCCAGCCTCTCCTGAAAATACAACATAC
CCTCCTACTGGTTCTTCGTACCGCGAGAGCGGCGAGGCGGATGGTGGGGT
ACCGTACTGGTCTTGGCGTCCCCCTGCCGTGCTAAAGAGCGAGAGCTTGC
CGAGTCCGCGAGCAGCACGAAGAAGGGCGGAGACGGAAGAGAGGAAGAAA
AACGCCACACTTACGTTCTTTTACTCATTGCTGGAGAGTCAAAGAGGTGG
GACAATTCAATTTCTGACCCGTGTGCGAAGGGTGGGGTGAGGGCGTTGTA
TGCTTTTTTAAAGCATGCCAATCAAGATGGTACGAACACTCGATATACGG
AGAGCTCATCGAAAACGCGGGCCTTTCCCTTCGTGGCTCTATCGAAGGGT
CTGAAGATCGCTCCCGCCTCCCCTCGCGCCCGCCTTCGCCTCCGTCCCCG
CCCCGTTTTCGTTTTGGCAGAATATCTCTGTCTGCGTGGAGCGCGGGAAG
AGTCGCTGGTCGAGCTGGCCGCAGTTGTGAGGCTGGTTGAACGAGCGGAA
AAGTCTCTCAGGGACGTATCCCTTGACCATCGTTTCGGCAGCAACAGGTC
AGCAAGAACACGCAGAGTGAACGCGTATTACATTTCCTCTCAATGATTTT
CGTCGCGATGGTCCATATCGACACATGGCAAAAACTAGCGAAGTGTAAGC
GAGGTGGCCATATTTCGTCTTTGCTTGGTCAAGGGGATATTTCCGTTAAT
CCTTCGTTCAATCCGCGGCAGTTTTGCCGTGAAGATTCTAACATAGCGTC
TGGGAGTCTCTCGCACGCAACCAACCACTCTAAGACTCCGGCTGAGGCAA
CAACTGCCTTCTACCACGTCATCGCCGAAATTTGCTCTGGTCGCTGTTGA
TATTTACATGGCTACGCTGCTGTATCTTATTTTGTCCGTTCTTTTCTTCG
GGAACGATCGTGGACCGCCTGGGGCTGTGCGGGGTCTCCCAGCTCGCCAG
GAAGGATTTCCATCCGGGTGCTGCACCCGCGCGGAGGGGAACCCTGGGAC
GGGACGCGGGACAGGATTGCCGCCGACATCGCGGCCGCGCGCAAGCAAAA
AAAAGAAGAGAAGGCAAGCTAAGCCAAGCGCGCCCCTCCTTGGAATAATA
ACACGTAAGTCACCGTGGCGAAAACATCATCGTGAAAAGTATTATCCTGG
TCAATTAGGCTGTTTGTTGTCTCTGAGGAACAGCCGTGGGGAGAAAAATC
CGCAGCCAACGTATGTTTTTGATACTTTCGGCGGGCAGGCGAAACAAAAG
GTCCGGAGACCGAATTTTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig74869:809..2879+

>mRNA_H-elongata_contig74869.15164.1 ID=mRNA_H-elongata_contig74869.15164.1|Name=mRNA_H-elongata_contig74869.15164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig74869:809..2879+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGTTCCGGGGGTCATGTTGACCATTTCCTGTCGAGGCGCTGAGGC
CATCATGCGATTTGCGGAAGAAATGCTGGTTCCGGGGGTCATGTTGACCA
TTTCCTGTCGAGGCGCTGAGGCCATCATGCGATTTGCGGAAGAAGTTCAA
CAAAAAGACGGCGAGCACGTCGGGGGAAGGGAGAAGGCGGCGCTTGACAT
CGTTGCGGAGGCGATCATGCAGGTGCCGTTCGTGACTCGGCGGGATGGTC
CTCGCACAGGACTTCTCGTGGTTCAACAAAAAGACGGCGAGCACGTCGGG
GGAAGGGAGAAGGCGGCGCTTGACATCGTTGCGGAGGCGATCATGCAGGT
GCCGTTCGTGACTCGGCGGGATGGTCCTCGCACAGGACTTCTCGTGACCA
AGCTACAAGCCACGGTGCGCGGATGGCTTGCACGACGCCTCGCCCGGTCG
ATGATTCTCCGCGGCGGCTGTCGTCGTGAGATAGACGATCGCTCAGGCGC
GTGGGTGTACGTCTGGTCGTGCGACCCAGCCTCTCCTGAAAATACAACAT
ACCCTCCTACTGGTTCTTCGTACCGCGAGAGCGGCGAGGCGGATGGTGGG
GTACCGTACTGGTCTTGGCGTCCCCCTGCCGTGCTAAAGAGCGAGAGCTT
GCCGAGTCCGCGAGCAGCACGAAGAAGGGCGGAGACGGAAGAGAGGAAGA
AAAACGCCACACTTACGTTCTTTTACTCATTGCTGGAGAGTCAAAGAGAC
CAAGCTACAAGCCACGGTGCGCGGATGGCTTGCACGACGCCTCGCCCGGT
CGATGATTCTCCGCGGCGGCTGTCGTCGTGAGATAGACGATCGCTCAGGC
GCGTGGGTGTACGTCTGGTCGTGCGACCCAGCCTCTCCTGAAAATACAAC
ATACCCTCCTACTGGTTCTTCGTACCGCGAGAGCGGCGAGGCGGATGGTG
GGGTACCGTACTGGTCTTGGCGTCCCCCTGCCGTGCTAAAGAGCGAGAGC
TTGCCGAGTCCGCGAGCAGCACGAAGAAGGGCGGAGACGGAAGAGAGGAA
GAAAAACGCCACACTTACGTTCTTTTACTCATTGCTGGAGAGTCAAAGAG
AATATCTCTGTCTGCGTGGAGCGCGGGAAGAGTCGCTGGTCGAGCTGGCC
GCAGTTGTGAGGCTGGTTGAACGAGCGGAAAAGTCTCTCAGGGACGTATC
CCTTGACCATCGTTTCGGCAGCAACAGAATATCTCTGTCTGCGTGGAGCG
CGGGAAGAGTCGCTGGTCGAGCTGGCCGCAGTTGTGAGGCTGGTTGAACG
AGCGGAAAAGTCTCTCAGGGACGTATCCCTTGACCATCGTTTCGGCAGCA
ACAGCTCGCCAGGAAGGATTTCCATCCGGGTGCTGCACCCGCGCGGAGGG
GAACCCTGGGACGGGACGCGGGACAGGATTGCCGCCGACATCGCGGCCGC
GCGCAAGCAAAAAAAAGAAGAGAAGCTCGCCAGGAAGGATTTCCATCCGG
GTGCTGCACCCGCGCGGAGGGGAACCCTGGGACGGGACGCGGGACAGGAT
TGCCGCCGACATCGCGGCCGCGCGCAAGCAAAAAAAAGAAGAGAAGGCGA
AACAAAAGGTCCGGAGACCGAATTTTCACGCGAAACAAAAGGTCCGGAGA
CCGAATTTTCAC
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