mRNA_H-elongata_contig74784.15157.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: D7FQJ3_ECTSI (Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ3_ECTSI) HSP 1 Score: 207 bits (526), Expect = 5.810e-64 Identity = 102/127 (80.31%), Postives = 112/127 (88.19%), Query Frame = 1
Query: 1 EKVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARDLDLMGKASHYLGPVGKGTEMKLVVRFL 381
++VVE+C +TYSMLSTPEAAS+VF+D DGVLAGLS GK LVDCATLQVEDMQDMY EA +GAKFLEAPVSGSKGPAAAGQLVFLC GD DLF+ A+ DLDLMGKASHYLGP GKGTEMKLVV +
Sbjct: 103 KEVVEQCSITYSMLSTPEAASEVFFDPHDGVLAGLSKGKCLVDCATLQVEDMQDMYSEAIGRGAKFLEAPVSGSKGPAAAGQLVFLCGGDEDLFERASEDLDLMGKASHYLGPAGKGTEMKLVVNMI 229
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A6V1VYN4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VYN4_HETAK) HSP 1 Score: 154 bits (388), Expect = 2.430e-43 Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 4 KVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARDLDLMGKASHYLGPVGKGTEMKLVV 372
+V+ T+SMLSTP+AA VFY + DG+LAG GKS+VDCATLQ EDMQ+ + TEKG +FLEAPVSGSKGPA AGQL+FL AG+R LFDA +LDLMGKAS YLG +G+GT MKLVV
Sbjct: 65 EVIGSTQTTFSMLSTPKAARAVFY-ADDGILAGAFEGKSIVDCATLQEEDMQEFSLKFTEKGGRFLEAPVSGSKGPAEAGQLIFLTAGERALFDAVQPELDLMGKASFYLGDIGQGTRMKLVV 186
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A835YH89_9STRA (2-hydroxy-3-oxopropionate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH89_9STRA) HSP 1 Score: 149 bits (377), Expect = 4.120e-42 Identity = 79/126 (62.70%), Postives = 94/126 (74.60%), Query Frame = 1
Query: 4 KVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARDLDLMGKASHYLGPVGKGTEMKLVVRFL 381
+V+E VT+SMLSTPEA+S VF + GVLAG++ GKS+VDCATL V DMQ M ++ T G FLEAPVSGSKGPAAAGQL+FLC G LF+ +L+LMGKAS LG VGKGTEMKLV +
Sbjct: 62 EVIESVDVTFSMLSTPEASSAVF-NGDSGVLAGVTDGKSIVDCATLTVADMQGMAQQVTANGGDFLEAPVSGSKGPAAAGQLIFLCGGSEPLFERVKGELELMGKASFLLGGVGKGTEMKLVANMI 186
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A7S1V398_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V398_9STRA) HSP 1 Score: 146 bits (369), Expect = 3.480e-41 Identity = 81/129 (62.79%), Postives = 95/129 (73.64%), Query Frame = 1
Query: 1 EKVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARD-LDLMGKASHYLGP-VGKGTEMKLVVRFL 381
++VVE CG+TYSMLSTPEA+ VF + + GVLAG+SAGKS+VDCATL DM M + T G +FLEAPVSGSKGPAA G L+FLCAG +DLFD D L++MGKASHY VG GT KLVV L
Sbjct: 21 KEVVEACGITYSMLSTPEASKIVF-EGETGVLAGVSAGKSIVDCATLAESDMLRMNEAVTAAGGRFLEAPVSGSKGPAAQGSLIFLCAGSKDLFDEIKEDGLNVMGKASHYFSATVGYGTRAKLVVNSL 148
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A7S0AZA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZA9_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.260e-40 Identity = 80/126 (63.49%), Postives = 91/126 (72.22%), Query Frame = 1
Query: 7 VVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARDLDLMGKASHYLG-PVGKGTEMKLVVRFL 381
VVE CGVTYS+LSTPEAA VF D+ DGVLAG+ G+S+VDCATL DMQ M + G +FLEAPVSGSKGPAA G L+FLCAG++ LFD A L MGKASH+ G VG GT KLVV L
Sbjct: 87 VVEACGVTYSILSTPEAAKAVF-DAADGVLAGVGEGRSIVDCATLAEADMQRMNEAIVATGGRFLEAPVSGSKGPAATGTLIFLCAGNKALFDEVAAGLSAMGKASHFFGNEVGAGTRAKLVVNSL 211
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A7S0LUL6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LUL6_9EUKA) HSP 1 Score: 144 bits (364), Expect = 3.930e-40 Identity = 73/123 (59.35%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 4 KVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARDLDLMGKASHYLGPVGKGTEMKLVV 372
+V + + Y MLSTPE V Y+ + GVLAG++AGK +VDCAT+ +DMQ +YK+ T+KG +FLEAPVSGSKGPA AGQL+FLCAGD LF A DLD MGKAS + G G G MKLVV
Sbjct: 62 EVFSKTNLVYCMLSTPEVVKSV-YEMEAGVLAGVTAGKCIVDCATIAPDDMQRLYKQVTDKGGRFLEAPVSGSKGPAHAGQLIFLCAGDEALFKEATADLDAMGKASFFFGEPGSGARMKLVV 183
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A7S1U922_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U922_9STRA) HSP 1 Score: 145 bits (365), Expect = 5.850e-40 Identity = 80/126 (63.49%), Postives = 91/126 (72.22%), Query Frame = 1
Query: 4 KVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARDLDLMGKASHYLGPVGKGTEMKLVVRFL 381
+V E VT+SMLSTPEAA+ VF D DGVLAGL GK+LVDCATL+ DMQ M A GA F+EAPVSGSKGPA G LVFL GD ++A A +LDLMGKA +YLG VGKGT MKLVV +
Sbjct: 93 EVCESADVTFSMLSTPEAAAAVF-DGPDGVLAGLGRGKTLVDCATLEEADMQRMALAAEGAGATFVEAPVSGSKGPAETGTLVFLAGGDEAAYEAIAPELDLMGKAKYYLGGVGKGTRMKLVVNMV 217
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A2V3IQN9_9FLOR (Glyoxylate/succinic semialdehyde reductase 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQN9_9FLOR) HSP 1 Score: 142 bits (359), Expect = 1.730e-39 Identity = 74/128 (57.81%), Postives = 90/128 (70.31%), Query Frame = 1
Query: 4 KVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLF--DAAARDLDLMGKASHYLGPVGKGTEMKLVVRFL 381
+VV VT+SMLSTPEA VF++ + + G+S GKS+VDC+TLQ+EDM K EK FLEAPVSGSKGPA GQL+FLCAGD +L+ + LDLMGK S +LGPVG GT+MKLVV L
Sbjct: 47 EVVANSEVTFSMLSTPEAVKSVFFEQDNAAIHGVSEGKSIVDCSTLQIEDMVQTDKAVREKNGAFLEAPVSGSKGPAEQGQLIFLCAGDENLYKSETVQTGLDLMGKRSFFLGPVGNGTKMKLVVNTL 174
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A7S4NXR3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NXR3_9EUKA) HSP 1 Score: 141 bits (356), Expect = 5.350e-39 Identity = 74/126 (58.73%), Postives = 87/126 (69.05%), Query Frame = 1
Query: 7 VVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAA-RDLDLMGKASHYLGPVGKGTEMKLVVRFL 381
VVE C VTYS L+TPE A V + + G G+SAGKSLV+C+TL V MQ + KG +FLEAPVSGSKGPA G L+FLC GD+ LFD DL+ MGKAS YLGP GKG+EMKLVV +
Sbjct: 59 VVEACDVTYSCLTTPEVARAVHFHEETGSFLGISAGKSLVECSTLDVATMQAFDEAIKAKGGRFLEAPVSGSKGPAEQGTLIFLCGGDKTLFDEVRPNDLEAMGKASFYLGPTGKGSEMKLVVNMI 184
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Match: A0A1Z5JKR4_FISSO (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKR4_FISSO) HSP 1 Score: 141 bits (355), Expect = 1.150e-38 Identity = 79/128 (61.72%), Postives = 89/128 (69.53%), Query Frame = 1
Query: 4 KVVERCGVTYSMLSTPEAASDVFYDSQDGVLAGLSAGKSLVDCATLQVEDMQDMYKEATEKGAKFLEAPVSGSKGPAAAGQLVFLCAGDRDLFDAAARD-LDLMGKASHYLGP-VGKGTEMKLVVRFL 381
+VVE C VTYSMLSTPEA+ VF DGVLAG+S GKS+VDCATL DM+ M KG +FLEAPVSGSK PAA G L+FLCAG DLF + L+ MGKASHY G VG+GT KLVV L
Sbjct: 63 EVVEACAVTYSMLSTPEASKAVFEMEGDGVLAGVSEGKSIVDCATLAEVDMKRMNDAVVAKGGRFLEAPVSGSKAPAATGALIFLCAGSEDLFKEIENNGLNAMGKASHYFGSEVGRGTRAKLVVNSL 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74784.15157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74784.15157.1 >prot_H-elongata_contig74784.15157.1 ID=prot_H-elongata_contig74784.15157.1|Name=mRNA_H-elongata_contig74784.15157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp MFFMTRRMACWLDCRRARAWSTAPRFRWRTCKTCTRRLLKRERSSSRRRFback to top mRNA from alignment at H-elongata_contig74784:112..1409- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74784.15157.1 ID=mRNA_H-elongata_contig74784.15157.1|Name=mRNA_H-elongata_contig74784.15157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1298bp|location=Sequence derived from alignment at H-elongata_contig74784:112..1409- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74784:112..1409- >mRNA_H-elongata_contig74784.15157.1 ID=mRNA_H-elongata_contig74784.15157.1|Name=mRNA_H-elongata_contig74784.15157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig74784:112..1409- (Himanthalia elongata Himel1 dioecious)back to top |