mRNA_H-elongata_contig74764.15155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74764.15155.1
Unique NamemRNA_H-elongata_contig74764.15155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74764.15155.1 vs. uniprot
Match: A0A6H5JP61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP61_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 5.250e-36
Identity = 76/140 (54.29%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:    4 GYNAGAMLNEGRAIFQAGLSVRENSAVMNGGGFINESGARMVFYDGAEFVANIGTGSGGAILNRAELVFRAVNGEGS-----------------SSILTFQDNYSGEDECKDIQNESGSEVSGLHG-VDNLCEIGTQEIL 369
            GY AGA+LN GR +F+  +SVR+N+AVM+GGGFINESG R++F+ GAEF++N+GTGSGGAILN AEL F A  G+                   +  L FQDNY GE EC+DIQN+ GS + GLH  V +LC+IGTQ+I+
Sbjct:  136 GYQAGALLNAGRMVFRGEVSVRDNTAVMDGGGFINESGGRILFFHGAEFLSNVGTGSGGAILNHAELDF-APGGDXXXXXXXXXXXXXXXSTTRTFTLDFQDNYCGEQECQDIQNKDGSSILGLHQYVPDLCDIGTQDIV 274
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BLAST of mRNA_H-elongata_contig74764.15155.1 vs. uniprot
Match: D8LLD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD1_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.270e-34
Identity = 75/141 (53.19%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:    4 GYNAGAMLNEGRAIFQAGLSVRENSAVMNGGGFINESGARMVFYDGAEFVANIGTGSGGAILNRAELVFRAVNGEGS------------------SSILTFQDNYSGEDECKDIQNESGSEVSGLHG-VDNLCEIGTQEIL 369
            GY AGA+LN GR +F+  +SVR+N+AVM+GGGFINESG R++F+ GAEF++N+GTGSGGAILNR EL F                          +  L F+DNY GE EC+DIQN+ GS V GLH  V NLC+IGTQ+I+
Sbjct:  330 GYQAGALLNAGRMVFRGEVSVRDNTAVMDGGGFINESGGRVLFFHGAEFLSNVGTGSGGAILNRGELDFTPGGDXXXXXXXXXXXXXXXXXXTTRTFTLDFEDNYCGEQECQDIQNKDGSSVLGLHQYVSNLCDIGTQDIV 470
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74764.15155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP61_9PHAE5.250e-3654.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLD1_ECTSI3.270e-3453.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74764contigH-elongata_contig74764:304..2657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size905
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74764.15155.1prot_H-elongata_contig74764.15155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74764 1096..2636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.8823512-UTR-H-elongata_contig74764:303..7171622931151.8823512-UTR-H-elongata_contig74764:303..717Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74764 304..717 -
1691679719.4789462-UTR-H-elongata_contig74764:303..7171691679719.4789462-UTR-H-elongata_contig74764:303..717Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74764 304..717 -
1622931151.9020536-UTR-H-elongata_contig74764:979..10951622931151.9020536-UTR-H-elongata_contig74764:979..1095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74764 980..1095 -
1691679719.4943416-UTR-H-elongata_contig74764:979..10951691679719.4943416-UTR-H-elongata_contig74764:979..1095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74764 980..1095 -
1622931151.9735153-UTR-H-elongata_contig74764:2636..26571622931151.9735153-UTR-H-elongata_contig74764:2636..2657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74764 2637..2657 -
1691679719.5364535-UTR-H-elongata_contig74764:2636..26571691679719.5364535-UTR-H-elongata_contig74764:2636..2657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74764 2637..2657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.9185374-CDS-H-elongata_contig74764:1095..11911622931151.9185374-CDS-H-elongata_contig74764:1095..1191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74764 1096..1191 -
1691679719.5083218-CDS-H-elongata_contig74764:1095..11911691679719.5083218-CDS-H-elongata_contig74764:1095..1191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74764 1096..1191 -
1622931151.9361258-CDS-H-elongata_contig74764:1979..21481622931151.9361258-CDS-H-elongata_contig74764:1979..2148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74764 1980..2148 -
1691679719.5177772-CDS-H-elongata_contig74764:1979..21481691679719.5177772-CDS-H-elongata_contig74764:1979..2148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74764 1980..2148 -
1622931151.9543128-CDS-H-elongata_contig74764:2547..26361622931151.9543128-CDS-H-elongata_contig74764:2547..2636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74764 2548..2636 -
1691679719.5262728-CDS-H-elongata_contig74764:2547..26361691679719.5262728-CDS-H-elongata_contig74764:2547..2636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74764 2548..2636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74764.15155.1

>prot_H-elongata_contig74764.15155.1 ID=prot_H-elongata_contig74764.15155.1|Name=mRNA_H-elongata_contig74764.15155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MLNEGRAIFQAGLSVRENSAVMNGGGFINESGARMVFYDGAEFVANIGTG
SGGAILNRAELVFRAVNGEGSSSILTFQDNYSGEDECKDIQNESGSEVSG
LHGVDNLCEIGTQEILG*
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mRNA from alignment at H-elongata_contig74764:304..2657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74764.15155.1 ID=mRNA_H-elongata_contig74764.15155.1|Name=mRNA_H-elongata_contig74764.15155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2354bp|location=Sequence derived from alignment at H-elongata_contig74764:304..2657- (Himanthalia elongata Himel1 dioecious)
AGGGGGTACAACGCGGGAGCGATGCTGAACGAAGGGAGAGCGATCTTCCA
AGCAGGACTCAGTGTGCGAGAAAACTCCGCGGTAATGAACGGAGGCGGCT
TCATCAACGAGTGAGTACCCTACCGCGAGGAAGATATACCCCAGCATCGA
TTACCATTTTGAAACACGAACAAATGCAGGTAGTGTAGTCCCCAGGAGCT
TACCGCGACGGAGATAATCCTGCGTGGGGGCGCGTTCTACTCAACACGGG
CGAGCACCGCTGTGGCAAGGCTTTGCGTAAGATAAACAAGTAAAGCCTAC
ACCTACATACGAGGAGACGCCTCCTTCGTGGGAGTCGCTCTCACTTCAGT
CGCATAATCACATAAAATGTCGGTTATCGTGGAACCCCCAAAAATCCTAA
GATCCACTCTTACTGACCTATATATATAATATATATATATATATATATAT
AGACTAAGCTGTCCGTTTGCCCCAAATCGCCGTGTTCTCCCGGTTCTCGC
ACGGTTCAGGAGCGGAGCAAGGATGGTATTCTACGACGGGGCGGAGTTCG
TGGCCAATATTGGCACCGGGTCAGGCGGGGCCATCCTCAACCGCGCAGAA
CTCGTCTTTAGGGCCGTCAACGGAGAGGGCTCCTCCTCCATTCTGACCTT
CCAGGACAATTATAGCGGAGAAGACGAGGTGGGGGGAGAGAGGGACGCTC
AAAACGAAATTAATTCCCACTCGATCATTCGCGCCCCGCATGCCATTCGA
TTGATACCGCTGGGTTGATATGTTTGCCTTATACAGCCGCTCCCGTTACG
ATTACCGCACAAGAAAGGGTGAACTCCCGCGCACCAGGGCTCCCCCCGCG
CGCCTCCGCATGCCCACACGCGCCTCCGCATGCCCACACGCGCACGCGCG
CGCACGGATTCCACCAAATTGTAGGCGCGCATCATGTCGTGGCTCTAGGA
AATAGTCATAAAAGCCTTCCAGGGTAAACAGAAACAACAGGAACCAGACG
CTTACTCATTTCGCTGCAGGGCAAGGCGCAGGAGAGTTGAATAGGGCGAG
GGCGAGAAGCATTGGGTAGACGGTATATGTGATAACCGATTCATACTCCC
GCGCTGTTTTTGAGGTCTAGATCACCAGCTGGTTTTTATACATACATGGT
AGAGGCGGTTTTGCTAGGGAAATTGGGTGCGTTTTATTTTTTAATATGAG
CTTGTGCTCTCATTTTTTCTTGCTTTCTATCAAGGATAGTTTATTCCGTT
GGTCGCAAACGAGAGCTTTTCAAGTCTCTAGCTATATATAGACTACGGGT
GTACCGTGATAATGTTTTTATTTTGTAGAGAGGGATGTGAGATTCCTCTA
ATTGCGCAAGATCCTCGAGGAAACCCCACTATCGATGATGTTTTGAATAA
TGACTCTCATCGTCCCGTACGCCTGTTCGCGCTTTTGAAACCTCGGGGAC
TGATTGTTGTTGCCAGTGTAAAGACATCCAGAACGAGTCCGGGAGTGAAG
TCTCCGGGCTACACGGCGTTGACAACCTTTGCGAGATCGGTACTCAAGAA
ATCTTGGGATAAAAAAGGAAAGATGCAGGAATTATCAATTCGACAGGCCG
TCCAGCTCGCCAACGAGGTGTTCGCTCCATCCATTCCCATATTTATATGT
TATGATACACACTCTTGATTGTACAATTGTATGGACTAAAGTAAAGGGGC
GGGTAAACATTCACACACACACATATATAATATATATATAGCAGGCACGG
AGGTACAGATTGGTGCGTTGGAGATGCGGTGGATCCCTCCCTGGCGATTG
TTTTGACGAATATGTCATGTCATTGCTAGGTTGAAGCTCTTCTGCCTTGG
CAGAGGATGACGGGAATAGGAGAGAATGAGAGGCAGAGGATGACAGGAAT
AGGAGAGAATGAGAGGCATAGGATGACAGGAATAGGAGAGAATGAGAGAG
AGATACATATGCCATGTGTTAAATGAATGAACCATGTGGGTCGTAAGTAA
TTATAGATGTTGAGGATTCGGTTCCCCTGGGTATATCCAGTAGCAGTGAA
TGCGATGGTGGGCACATCCAAAGACTTAGACTAGGGGTAACGAGGCGTTT
CTCGTCGCAACACGGGCAGTAATGCAGTATCCTAGCGCGGAGGCATTGGG
GCCTCGGATATACAAGTATGTAGGTGTCTCCTTCCTTCCCTTGGGACCAC
AACGGCGAATGGCCATCGACCATCAAACGACCCTTCTCGGTGCTAAGAAG
GTGCGTGGATGTTCGGAGGGTTGGAATGATGAGTTCACAGGAATAGCGCG
AGCATATTTGTCCACAACACGGAAGCTAGCCAGCTCTTGAGGTGAAGACT
GATG
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Coding sequence (CDS) from alignment at H-elongata_contig74764:304..2657-

>mRNA_H-elongata_contig74764.15155.1 ID=mRNA_H-elongata_contig74764.15155.1|Name=mRNA_H-elongata_contig74764.15155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig74764:304..2657- (Himanthalia elongata Himel1 dioecious)
ATGCTGAACGAAGGGAGAGCGATCTTCCAAGCAGGACTCAGTGTGCGAGA
AAACTCCGCGGTAATGAACGGAGGCGGCTTCATCAACGAATGCTGAACGA
AGGGAGAGCGATCTTCCAAGCAGGACTCAGTGTGCGAGAAAACTCCGCGG
TAATGAACGGAGGCGGCTTCATCAACGAGAGCGGAGCAAGGATGGTATTC
TACGACGGGGCGGAGTTCGTGGCCAATATTGGCACCGGGTCAGGCGGGGC
CATCCTCAACCGCGCAGAACTCGTCTTTAGGGCCGTCAACGGAGAGGGCT
CCTCCTCCATTCTGACCTTCCAGGACAATTATAGCGGAGAAGACGAGGAG
CGGAGCAAGGATGGTATTCTACGACGGGGCGGAGTTCGTGGCCAATATTG
GCACCGGGTCAGGCGGGGCCATCCTCAACCGCGCAGAACTCGTCTTTAGG
GCCGTCAACGGAGAGGGCTCCTCCTCCATTCTGACCTTCCAGGACAATTA
TAGCGGAGAAGACGAGTGTAAAGACATCCAGAACGAGTCCGGGAGTGAAG
TCTCCGGGCTACACGGCGTTGACAACCTTTGCGAGATCGGTACTCAAGAA
ATCTTGGGATAATGTAAAGACATCCAGAACGAGTCCGGGAGTGAAGTCTC
CGGGCTACACGGCGTTGACAACCTTTGCGAGATCGGTACTCAAGAAATCT
TGGGATAA
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