mRNA_H-elongata_contig74741.15153.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig74741.15153.1
Unique Name	mRNA_H-elongata_contig74741.15153.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig74741.15153.1 vs. uniprot
Match: D7FSG2_ECTSI (WD-repeat protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.370e-37
Identity = 91/168 (54.17%), Postives = 101/168 (60.12%), Query Frame = 1

Query:    1 SSQVFFPNDKSGDVLVFPLHSVDGKSKGQLRAHFDPVQCCAYRSRTQELVTCGADGLTLLWSA--PTTADRAQRPSRASYLA--LRAVHGSSLGLLGRDDGEDQDTWSSGDDE-----------ERRRGVGHAPTGSGAGANNASPNTEGERDRGGGFVPPILMQGRR 459
            S  VFFPNDKSGDVLVFPLH+ DG+ KG+LR HFDPVQCCAYR RTQE+VTCGADGL LLWSA  P  A      SRASYL   L A  G +   LG    EDQD WSS DDE           +   GVG++   SG G + +          GG FVP IL Q RR
Sbjct:  405 SETVFFPNDKSGDVLVFPLHTPDGRPKGKLRGHFDPVQCCAYRPRTQEVVTCGADGLVLLWSAAGPPWA------SRASYLPPPLAAGAGGTKRRLGEST-EDQDMWSS-DDEGGDGSRTSPAFDSLEGVGNSTISSGTGRSGSRRGGRSPGGSGGAFVPRILTQPRR 564

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig74741.15153.1 vs. uniprot

BLAST of mRNA_H-elongata_contig74741.15153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FSG2_ECTSI	1.370e-37	54.17	WD-repeat protein, putative n=2 Tax=Ectocarpus Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig74741	contig	H-elongata_contig74741:44..2146 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	143.7
Seed ortholog evalue	7.3e-32
Seed eggNOG ortholog	2880.D7FSG2
Preferred name	ERCC8
KEGG ko	ko:K10570,ko:K14538
KEGG Pathway	ko03008,ko03420,ko04120,map03008,map03420,map04120
KEGG Module	M00386
GOs	GO:0000109,GO:0000151,GO:0000209,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010498,GO:0010604,GO:0016363,GO:0016567,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0033554,GO:0034399,GO:0034641,GO:0036211,GO:0036477,GO:0043025,GO:0043161,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0045739,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051603,GO:0051716,GO:0051865,GO:0060255,GO:0065007,GO:0070013,GO:0070647,GO:0070912,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097458,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234,GO:1990391,GO:2001020,GO:2001022
EggNOG free text desc.	transcription-coupled nucleotide-excision repair
EggNOG OGs	KOG4283@1,KOG4283@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03009,ko03400,ko04121
Hectar predicted targeting category	other localisation
Exons	2
Model size	462
Cds size	462
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931151.6288364-CDS-H-elongata_contig74741:43..126	1622931151.6288364-CDS-H-elongata_contig74741:43..126	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74741 44..126 +
1691679719.434523-CDS-H-elongata_contig74741:43..126	1691679719.434523-CDS-H-elongata_contig74741:43..126	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74741 44..126 +
1622931151.7591157-CDS-H-elongata_contig74741:1767..2146	1622931151.7591157-CDS-H-elongata_contig74741:1767..2146	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74741 1768..2146 +
1691679719.4472506-CDS-H-elongata_contig74741:1767..2146	1691679719.4472506-CDS-H-elongata_contig74741:1767..2146	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74741 1768..2146 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig74741.15153.1	prot_H-elongata_contig74741.15153.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig74741 44..2146 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig74741:44..2146+
coding sequence from alignment at H-elongata_contig74741:44..2146+

protein sequence of mRNA_H-elongata_contig74741.15153.1

>prot_H-elongata_contig74741.15153.1 ID=prot_H-elongata_contig74741.15153.1|Name=mRNA_H-elongata_contig74741.15153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
SSQVFFPNDKSGDVLVFPLHSVDGKSKGQLRAHFDPVQCCAYRSRTQELV
TCGADGLTLLWSAPTTADRAQRPSRASYLALRAVHGSSLGLLGRDDGEDQ
DTWSSGDDEERRRGVGHAPTGSGAGANNASPNTEGERDRGGGFVPPILMQ
GRR*

mRNA from alignment at H-elongata_contig74741:44..2146+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig74741.15153.1 ID=mRNA_H-elongata_contig74741.15153.1|Name=mRNA_H-elongata_contig74741.15153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2103bp|location=Sequence derived from alignment at H-elongata_contig74741:44..2146+ (Himanthalia elongata Himel1 dioecious)
TCCTCGCAGGTTTTTTTCCCCAACGACAAAAGCGGGGATGTTCTCGTATT
TCCCCTGCACTCGGTTGATGGAAAGTCCAAGGGGTGAGCGAGAAGGGCGC
GTTCTTTTTTTTTGTGGCGGTATAGTAGTCGGTCGGTCGGTTGATCGATC
CTCTTTCAAAATGGGAAAATTGATAAATTTAGAATTTTGTGTGTGTGTGT
GTGTGTTTCTTGAGCTAAAAACGAAACCAAAGTGTTATGGCCAACATAAT
TTTCTTGGAATTATGATCAGTTTTTGCTATTGGGGAAAAAAATCCCGATT
CTGCCATCCGGTGATATGCATAGCGAATAATGCCGTTTCGCCGTCCCCGC
AGACCAACCAAAAGTTTTTCTTATTTTTTATTGTTCCCTTTCCCCACATT
TTGTGAACACTATTTATTTATCTTTGAAAATATATAAAAATTCATTCAAA
CCCTCCGAACATCCACACCTTCTTGGGAAAGATGTCGGTTGACGGTCAAG
CGTCAAGATTGTCTGGCAAGGCGTTTTGCAATGTTAAACCATTCCTTTTT
ATTTCTATGGAAACTCACATATTATTATTTGAAACACATGAGCTCATTAG
AACCCTCCGAATATCCACGCCTTCTTAGCATAATGAAGAGTGGAGTCCAG
GGGATTTTTACTATCGTCAGGTTCGAATATGGGCATTTTTACTACATTTA
AGCACAAAATCGTCATGTATGTTACCATTCATCATATGGGGATGTCAAAC
CGGAACCTAGGAAAGGTTAGACACAATATTGTACATTTGTCTGAGTTAAA
TTTCGGGCAAAGCTTCTGGAAGCATAAATATGTTTCGGGGGTATTTTGGA
TTGGGAAAAAAAATGGTCAATTTTTAATTATATGGTAAGAGGTTTTCCAA
AAAAGGGGATTTTTCTGTGTCCCCTGTTTTTTACTGTCAAGGTTGTCTTT
CAAGGCATTTTGGAAATTGTTGCCTGTCAAGGGGGGTTCATCTCTTGTCA
ACCGACATATTTACTTCTTAACATCGTACGTAAAATGTCCAGTCCAATTA
TATGTGTACATTACTACCTTTTGAGGACAAAATTGTCACGTGTGATTGGT
TAATCTTGTTCCCCAATAATAGTAAATTCATCGGGTCAACTTGTAATGTC
GGGGATCCGATCATTATCCCGAACACTTACATTATCGATGACGTCATCAT
AAAGGGACTATGACCCCAAAAACAGAGCTTCGAGAGTGGGCTATAAAGCA
GGAGGTTTTTAATGGAGTCATATATTCTGTATGCTGCTAAAAACATGCCC
ATTAGGTATTTTGTATATTGGTGAATCTCGGTATTATGTTTACATTATTA
GTGTGTTAGGGTTGGAGTGGATGTTTCTATATTTTAGCACCCTCTCATCT
GCCGACGATCTTCTGCGGGAACCTGTTTCCTTGGCCTCTCAAAAATCACA
CGCGCATTCTACAAACCCGTCATACACACCGTGTGCTATAAGGAAAAAAC
GCCATCCCGGAGAAAAAAAAACCCAAGCATTTATACTTCGGCTCCAGTTC
TTCATCTCTTTAAAAAGAAACTGTCGAAAAAGGGAAGGGAATAACGTTCT
TAAAATATTACTCCGTACTAATTAGAAAATATCATTTATTTCCAGATAAA
ATAGAAACGGAAAGAAGAGCTTCCTCCCAGCATATTGAGACCCCTTTTCT
CTCAATCTTGCCGATGCCTCCCAGGCAACTCCGGGCCCACTTTGACCCCG
TGCAGTGCTGCGCGTACCGCTCGAGGACACAAGAGCTCGTCACGTGCGGT
GCCGACGGCCTGACGCTATTGTGGTCCGCGCCGACGACGGCCGATCGGGC
GCAGCGGCCCTCGAGGGCGTCCTACCTCGCCCTCAGGGCCGTTCACGGGA
GTAGCCTGGGCCTTCTCGGACGCGACGACGGGGAGGATCAGGACACGTGG
AGCAGCGGTGACGACGAGGAGAGGCGACGGGGAGTTGGGCATGCGCCAAC
AGGATCAGGCGCCGGCGCTAACAACGCCAGCCCTAACACTGAGGGCGAAA
GAGACAGGGGGGGGGGATTCGTGCCGCCGATTTTGATGCAAGGGAGGCGG
TGA

Coding sequence (CDS) from alignment at H-elongata_contig74741:44..2146+

>mRNA_H-elongata_contig74741.15153.1 ID=mRNA_H-elongata_contig74741.15153.1|Name=mRNA_H-elongata_contig74741.15153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig74741:44..2146+ (Himanthalia elongata Himel1 dioecious)
TCCTCGCAGGTTTTTTTCCCCAACGACAAAAGCGGGGATGTTCTCGTATT
TCCCCTGCACTCGGTTGATGGAAAGTCCAAGGGTCCTCGCAGGTTTTTTT
CCCCAACGACAAAAGCGGGGATGTTCTCGTATTTCCCCTGCACTCGGTTG
ATGGAAAGTCCAAGGGGCAACTCCGGGCCCACTTTGACCCCGTGCAGTGC
TGCGCGTACCGCTCGAGGACACAAGAGCTCGTCACGTGCGGTGCCGACGG
CCTGACGCTATTGTGGTCCGCGCCGACGACGGCCGATCGGGCGCAGCGGC
CCTCGAGGGCGTCCTACCTCGCCCTCAGGGCCGTTCACGGGAGTAGCCTG
GGCCTTCTCGGACGCGACGACGGGGAGGATCAGGACACGTGGAGCAGCGG
TGACGACGAGGAGAGGCGACGGGGAGTTGGGCATGCGCCAACAGGATCAG
GCGCCGGCGCTAACAACGCCAGCCCTAACACTGAGGGCGAAAGAGACAGG
GGGGGGGGATTCGTGCCGCCGATTTTGATGCAAGGGAGGCGGTGAGCAAC
TCCGGGCCCACTTTGACCCCGTGCAGTGCTGCGCGTACCGCTCGAGGACA
CAAGAGCTCGTCACGTGCGGTGCCGACGGCCTGACGCTATTGTGGTCCGC
GCCGACGACGGCCGATCGGGCGCAGCGGCCCTCGAGGGCGTCCTACCTCG
CCCTCAGGGCCGTTCACGGGAGTAGCCTGGGCCTTCTCGGACGCGACGAC
GGGGAGGATCAGGACACGTGGAGCAGCGGTGACGACGAGGAGAGGCGACG
GGGAGTTGGGCATGCGCCAACAGGATCAGGCGCCGGCGCTAACAACGCCA
GCCCTAACACTGAGGGCGAAAGAGACAGGGGGGGGGGATTCGTGCCGCCG
ATTTTGATGCAAGGGAGGCGGTGA