mRNA_H-elongata_contig74728.15150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74728.15150.1
Unique NamemRNA_H-elongata_contig74728.15150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A6H5KWA0_9PHAE (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWA0_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.020e-56
Identity = 120/197 (60.91%), Postives = 146/197 (74.11%), Query Frame = 2
Query:  152 MLNRGIQILMISAFTQTSLSFVNLAVPIGRCCSLARSPVFIGVRTI--DVPSRANHLNVPLQMKVELEPEETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATT-AKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDDNE 733
            M  RG   L+++A  ++S  FV+ A    R  ++AR P  +G   +     SR    +  L M  +L P+ETVKKYGLEAGLF+A K+G K   +G +GAATT AKDLLK+YGSAYLITSI+ +L+SF ICF+AVSNGVD++SLLGK+GIETS  AETTGTVAVAYAIHKAASPIRFPPTVALTP VAKF+GK D E
Sbjct:    3 MFARG---LIVAALIESSSGFVSPAA--SRPGTIARLPTPVGAVALPRSAVSRGGR-SFTLGMVEKLGPDETVKKYGLEAGLFKALKDGNKEDADGEAGAATTTAKDLLKQYGSAYLITSISLSLVSFGICFVAVSNGVDMASLLGKVGIETSASAETTGTVAVAYAIHKAASPIRFPPTVALTPAVAKFLGKGDGE 193          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A7S2V8E4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8E4_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.640e-42
Identity = 93/151 (61.59%), Postives = 107/151 (70.86%), Query Frame = 2
Query:  302 RANHLNVPLQMKVELEP------EETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDDNEA 736
            + N LNV L+ K EL+       EE  +KYGLEAGLFQAFK        GG      AK+LL+RYGSAYLITSITFALISF IC+  V NGVD++ LL K+GI+    AET GT A+AYA HKAASPIRFPPTVALTPVVAK +GK D E+
Sbjct:   42 KKNTLNV-LKEKEELKTKDDKNLEEVTEKYGLEAGLFQAFK-------SGGENKGVQAKELLQRYGSAYLITSITFALISFGICYTLVDNGVDVAGLLEKVGIQAGDKAETAGTFAIAYAAHKAASPIRFPPTVALTPVVAKALGKKDIES 184          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A7S3F2S8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F2S8_9EUKA)

HSP 1 Score: 152 bits (383), Expect = 1.320e-40
Identity = 84/121 (69.42%), Postives = 98/121 (80.99%), Query Frame = 2
Query:  368 KYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVA-KFMGKDD 727
            K+GLEAGLF AF+    G E+ GS A  TA DLLKRYG AYL+TS + AL+SFS+C+LAV NGVDI+SLLGK+GIE S+ +ET GTV +AYAIHKAASPIRFPPTVALTPVVA K  GK +
Sbjct:    4 KFGLEAGLFSAFRSAASGDEKKGSMA--TAGDLLKRYGGAYLLTSTSLALVSFSLCYLAVDNGVDIASLLGKVGIEVSSTSETVGTVGIAYAIHKAASPIRFPPTVALTPVVARKVFGKQE 122          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A8J2S4Y9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4Y9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.720e-40
Identity = 84/138 (60.87%), Postives = 103/138 (74.64%), Query Frame = 2
Query:  323 PLQMKVELEPEETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDDNEA 736
            PL  +V+ E +ETV+K G+E GLF  F      G+      ATTA DLLK+YG AYL+TS +FA++SF+IC+  VSNGVD++ LLGK+GIE S  A+T GT A+AYA HKAASPIRFPPTVALTPVVAK +GK D EA
Sbjct:   43 PLLAQVDEELQETVEKSGVEGGLFSIFT-----GDGDAKEKATTAGDLLKQYGGAYLLTSTSFAIVSFAICYTLVSNGVDVAGLLGKIGIEPSQNAQTGGTFAIAYAAHKAASPIRFPPTVALTPVVAKMLGKGDGEA 175          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A8J6CCF1_DIALT (DUF1279 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCF1_DIALT)

HSP 1 Score: 149 bits (376), Expect = 1.740e-39
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 2
Query:  335 KVELEPEETVKKYGLEAGLFQAF--KEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGK 721
            K +  PEE  KK+GLEAG+F A   K+G      GG GA TTAKDLL +YG+AYL+TSI  A++SF++C+L V NGVD+S+LL K+GI  S   E  GTVA+AYA HKAASPIRFPPTVALTPVVA+ +GK
Sbjct:    5 KDDASPEEVTKKWGLEAGIFSALTNKDG-----SGGKGAMTTAKDLLAQYGAAYLLTSIPLAIVSFALCYLLVDNGVDVSALLAKVGISVSGGTEKVGTVAIAYAAHKAASPIRFPPTVALTPVVARLIGK 130          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A7S4D855_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D855_HETAK)

HSP 1 Score: 150 bits (378), Expect = 3.440e-39
Identity = 78/136 (57.35%), Postives = 105/136 (77.21%), Query Frame = 2
Query:  317 NVPLQMKVELEPEETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKD 724
            ++ L+ K++ E EET KKYGLEAGLF++ +      E  G    ++AK+LLK+YGSAYL+TSI+ A++SFS+C++ V NGVD++ LL K+GIETS  +E  GT A+AYA HKAASPIRFPPTVALTPVVA  +G++
Sbjct:   47 SLQLRAKIDDELEETTKKYGLEAGLFKSMQS-----EGDGESKVSSAKELLKKYGSAYLVTSISLAIVSFSLCYVMVDNGVDVAGLLSKVGIETSATSEKVGTFALAYAAHKAASPIRFPPTVALTPVVANLLGQE 177          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A835YRB9_9STRA (Transmembrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.150e-38
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 2
Query:  299 SRANHLNVPLQMKVELE--------PEETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDDNEAVN 742
            S A  L+  L+M  +L+        PE   +KYGLEAGLF   K        GG      AK+LLKRYG AYLITSI+FAL+SFSIC++ V +GVD+++LL K+GI+ +   E  GT A+AYA HKAASPIRFPPTVALTPVVAKF+GK  +E  +
Sbjct:   36 SCARRLSSALRMSTDLKEKETPDAAPEAVTEKYGLEAGLFSVMK-------SGGQNRGQQAKELLKRYGGAYLITSISFALVSFSICYVLVDSGVDVAALLNKVGIDATATTEKAGTFAIAYAAHKAASPIRFPPTVALTPVVAKFLGKKVDETAD 184          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A061R5E1_9CHLO (Protein fam210b-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5E1_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 3.810e-38
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 2
Query:  323 PLQMKVELEPEETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDDNE 733
            P + K +    ET +KYGLEAGLF+ F +      +     AT AK+LLKRYGSAYLITSI+FA++S++IC++ V  GVD+++LLGK+GI TS  +E  GT A+AYA HKAASPIRFPPTVALTPVVAK +GK  +E
Sbjct:   57 PEEPKTKSVGTETTEKYGLEAGLFKVFTDKSSDSAK----KATDAKELLKRYGSAYLITSISFAIVSYAICYVLVDQGVDVAALLGKVGISTSATSEKVGTAAIAYAAHKAASPIRFPPTVALTPVVAKLLGKKVDE 189          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A7S1UM22_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UM22_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.970e-38
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 2
Query:  353 EETVKKYGLEAGLFQAFKEGRKGGEEGGSGAATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKD 724
            EE  +KYGLE GLF+  K G KG       +  TAKDLL +YG+AYL TSI+ AL+SF+ C+  V NGVD++SLL K+GI  S  +ET GTVA+AYA+HKAASPIRFPPTVALTPVVA+F G D
Sbjct:   47 EEVTEKYGLEVGLFKTLKSGEKG-------SGQTAKDLLAKYGAAYLTTSISLALVSFATCYYLVDNGVDVASLLAKVGISVSGTSETAGTVAIAYAVHKAASPIRFPPTVALTPVVARFFGND 163          
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Match: A0A0M0JGR7_9EUKA (DUF1279 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGR7_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 4.990e-37
Identity = 81/139 (58.27%), Postives = 103/139 (74.10%), Query Frame = 2
Query:  314 LNVPLQMKVELEPEETVKKYGLEAGLFQAFKEGRKGGEEGGSG-AATTAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETSTPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDD 727
            L  P   + +  P+E V+KYGLEAGLF A K       +GGSG    TA +LLKRYG AYL+TS +FA++SF++C+LAV NGVD+++LL K+G+E   P E  GT+ +AYAIHKAASPIRFPPTVALTPVVAK + K+D
Sbjct:   33 LGSPTCAQKQQTPDEVVEKYGLEAGLFSALK-------KGGSGDGKVTAGELLKRYGGAYLLTSTSFAIVSFALCYLAVDNGVDVAALLEKVGLEVVVPKEA-GTIGLAYAIHKAASPIRFPPTVALTPVVAKRLFKND 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74728.15150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWA0_9PHAE1.020e-5660.91DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2V8E4_9STRA9.640e-4261.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3F2S8_9EUKA1.320e-4069.42Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8J2S4Y9_9STRA1.720e-4060.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J6CCF1_DIALT1.740e-3961.83DUF1279 domain-containing protein n=2 Tax=Diacrone... [more]
A0A7S4D855_HETAK3.440e-3957.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YRB9_9STRA1.150e-3853.85Transmembrane protein n=1 Tax=Tribonema minus TaxI... [more]
A0A061R5E1_9CHLO3.810e-3858.39Protein fam210b-like n=1 Tax=Tetraselmis sp. GSL01... [more]
A0A7S1UM22_9STRA3.970e-3862.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0M0JGR7_9EUKA4.990e-3758.27DUF1279 domain-containing protein n=1 Tax=Chrysoch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74728contigH-elongata_contig74728:1376..2901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue3.2e-48
Seed eggNOG ortholog2880.D7G6X9
Preferred nameFAM210B
KEGG koko:K20815
GOsGO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010467,GO:0014070,GO:0016020,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0019867,GO:0031090,GO:0031224,GO:0031365,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032355,GO:0032870,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045646,GO:0045648,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051604,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071392,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0098588,GO:0098805,GO:1901564,GO:1901700,GO:1901701,GO:1903706,GO:1903708,GO:2000026
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG4526@1,KOG4526@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionDUF1279 domain protein
Ec32 orthologEc-01_011830.1
Exons1
Model size1526
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74728.15150.1prot_H-elongata_contig74728.15150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74728 1527..2120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.3047726-UTR-H-elongata_contig74728:1375..15261622931151.3047726-UTR-H-elongata_contig74728:1375..1526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74728 1376..1526 +
1691679719.3340762-UTR-H-elongata_contig74728:1375..15261691679719.3340762-UTR-H-elongata_contig74728:1375..1526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74728 1376..1526 +
1622931151.3415687-UTR-H-elongata_contig74728:2120..29011622931151.3415687-UTR-H-elongata_contig74728:2120..2901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74728 2121..2901 +
1691679719.3578525-UTR-H-elongata_contig74728:2120..29011691679719.3578525-UTR-H-elongata_contig74728:2120..2901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74728 2121..2901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.3250046-CDS-H-elongata_contig74728:1526..21201622931151.3250046-CDS-H-elongata_contig74728:1526..2120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74728 1527..2120 +
1691679719.348814-CDS-H-elongata_contig74728:1526..21201691679719.348814-CDS-H-elongata_contig74728:1526..2120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74728 1527..2120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74728.15150.1

>prot_H-elongata_contig74728.15150.1 ID=prot_H-elongata_contig74728.15150.1|Name=mRNA_H-elongata_contig74728.15150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MLNRGIQILMISAFTQTSLSFVNLAVPIGRCCSLARSPVFIGVRTIDVPS
RANHLNVPLQMKVELEPEETVKKYGLEAGLFQAFKEGRKGGEEGGSGAAT
TAKDLLKRYGSAYLITSITFALISFSICFLAVSNGVDISSLLGKLGIETS
TPAETTGTVAVAYAIHKAASPIRFPPTVALTPVVAKFMGKDDNEAVN*
back to top

mRNA from alignment at H-elongata_contig74728:1376..2901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74728.15150.1 ID=mRNA_H-elongata_contig74728.15150.1|Name=mRNA_H-elongata_contig74728.15150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1526bp|location=Sequence derived from alignment at H-elongata_contig74728:1376..2901+ (Himanthalia elongata Himel1 dioecious)
GGAGCACCCAAAACACCCAATTACTTCCGAGTGAAGAACCTGTAAACTCG TGATTGCATATCGCACGCGTGGTTAATTGAACCCACGACTGACTGAGCGT GATTTGTTCGTGGGTGAAAGAACGTGGAAAGAAGAAATCCTGATATTCAA CATGCTCAATCGTGGCATCCAGATCCTCATGATTTCGGCTTTTACTCAGA CATCGTTATCTTTCGTCAACCTAGCAGTACCAATCGGCCGGTGCTGCTCG CTCGCACGTTCCCCGGTCTTCATCGGTGTGCGGACGATCGATGTACCATC CCGTGCGAATCATCTGAATGTACCTCTTCAAATGAAGGTTGAGCTAGAGC CTGAGGAGACAGTGAAGAAGTACGGCCTCGAGGCTGGCCTCTTCCAGGCC TTTAAGGAGGGGCGAAAGGGTGGGGAGGAGGGAGGCTCGGGCGCCGCTAC TACAGCAAAGGACCTGCTTAAGCGATACGGCTCTGCGTATCTCATCACTT CCATCACATTCGCGTTGATCTCATTCAGCATCTGCTTCTTGGCGGTGAGC AATGGCGTTGATATTTCGTCTTTGTTGGGTAAGCTCGGCATCGAGACCAG CACTCCAGCGGAGACCACCGGGACTGTGGCCGTTGCCTACGCAATCCATA AGGCCGCGTCGCCAATTCGCTTCCCGCCGACCGTGGCTTTGACTCCTGTA GTAGCCAAATTCATGGGCAAAGACGATAACGAAGCAGTGAACTAGGCTGT CAAGGAATGGGATTGATTGGCTGAAGCTTGTGAACGATGTCGGTGGGTAT CAAGCTACAGTACAAAGACCGGAGAATGGCGGGGTTCTGGAGAGAGTTGG TGGATGGGACATCAAAGGCAACCGAAGTTGAAGCTGACACTGCAGATACT GGGATCCACGTTCAATAACAGGTTGAGTCAGGGGTGGCATGTCGAGACTC CGTTTTCATATATAATTGTGGTTGGAAAGATTGCGCGTTCCACGCGGTAG CGGCAAAGAAGCCCGTCGTGATCCCGTCGTTGTCCATTTTTTGGAGTCCG GGCTGCTGTGAAGCAGTATGAAAAGTTTATGTTCGTGTACTGTCCTATAG TCTGGATACACGAGAGACTTACGTGGTTTTCACGTAGACGTATCCTATTG GTTTGTCGCTTGTCCTGTACACCAGCAACTTTCTGCCAGGGAGGAGATGG TAATGTTTTCATAGTGCCAATACAGTAGAGGGGCATGGTCTCTTTTATCC AATTTACTGGCACCTCCTGTAGCAGAGAGCTTTACTCGAGAGTGGTAGCT TTCCAGGGAGAGAAGAAATCCTTACGTGAAAATTTCATAGATGTTGGTAC GAAGGACAATCAGTAAATCACCCGGTCCCCATGACTCAGAAGACGGAATA GAGCGCTGTAGCTCCGGTTGTGGATGTATTGTGTAAATGTCGAGGGTGGA AAGGATGCCCCCCTCACACCCATCAGTAATAATTAAACTATAAACTCCTC TAATTATCTTGACTACGTTTACAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74728:1376..2901+

>mRNA_H-elongata_contig74728.15150.1 ID=mRNA_H-elongata_contig74728.15150.1|Name=mRNA_H-elongata_contig74728.15150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig74728:1376..2901+ (Himanthalia elongata Himel1 dioecious)
ATGCTCAATCGTGGCATCCAGATCCTCATGATTTCGGCTTTTACTCAGAC
ATCGTTATCTTTCGTCAACCTAGCAGTACCAATCGGCCGGTGCTGCTCGC
TCGCACGTTCCCCGGTCTTCATCGGTGTGCGGACGATCGATGTACCATCC
CGTGCGAATCATCTGAATGTACCTCTTCAAATGAAGGTTGAGCTAGAGCC
TGAGGAGACAGTGAAGAAGTACGGCCTCGAGGCTGGCCTCTTCCAGGCCT
TTAAGGAGGGGCGAAAGGGTGGGGAGGAGGGAGGCTCGGGCGCCGCTACT
ACAGCAAAGGACCTGCTTAAGCGATACGGCTCTGCGTATCTCATCACTTC
CATCACATTCGCGTTGATCTCATTCAGCATCTGCTTCTTGGCGGTGAGCA
ATGGCGTTGATATTTCGTCTTTGTTGGGTAAGCTCGGCATCGAGACCAGC
ACTCCAGCGGAGACCACCGGGACTGTGGCCGTTGCCTACGCAATCCATAA
GGCCGCGTCGCCAATTCGCTTCCCGCCGACCGTGGCTTTGACTCCTGTAG
TAGCCAAATTCATGGGCAAAGACGATAACGAAGCAGTGAACTAGATGCTC
AATCGTGGCATCCAGATCCTCATGATTTCGGCTTTTACTCAGACATCGTT
ATCTTTCGTCAACCTAGCAGTACCAATCGGCCGGTGCTGCTCGCTCGCAC
GTTCCCCGGTCTTCATCGGTGTGCGGACGATCGATGTACCATCCCGTGCG
AATCATCTGAATGTACCTCTTCAAATGAAGGTTGAGCTAGAGCCTGAGGA
GACAGTGAAGAAGTACGGCCTCGAGGCTGGCCTCTTCCAGGCCTTTAAGG
AGGGGCGAAAGGGTGGGGAGGAGGGAGGCTCGGGCGCCGCTACTACAGCA
AAGGACCTGCTTAAGCGATACGGCTCTGCGTATCTCATCACTTCCATCAC
ATTCGCGTTGATCTCATTCAGCATCTGCTTCTTGGCGGTGAGCAATGGCG
TTGATATTTCGTCTTTGTTGGGTAAGCTCGGCATCGAGACCAGCACTCCA
GCGGAGACCACCGGGACTGTGGCCGTTGCCTACGCAATCCATAAGGCCGC
GTCGCCAATTCGCTTCCCGCCGACCGTGGCTTTGACTCCTGTAGTAGCCA
AATTCATGGGCAAAGACGATAACGAAGCAGTGAACTAG
back to top